Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01001 and ECD_01002 are separated by 151 nucleotides ECD_01002 and ECD_01003 overlap by 1 nucleotides ECD_01003 and ECD_01004 are separated by 260 nucleotides
ECD_01001: ECD_01001 - TorA-maturation chaperone, at 1,066,087 to 1,066,686
_01001
ECD_01002: ECD_01002 - modulator of CbpA co-chaperone, at 1,066,838 to 1,067,143
_01002
ECD_01003: ECD_01003 - DnaK co-chaperone; curved DNA-binding protein, at 1,067,143 to 1,068,063
_01003
ECD_01004: ECD_01004 - uncharacterized protein, at 1,068,324 to 1,069,583
_01004
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-1
0
1 at 1066.266 kb on + strand, within ECD_01001 at 1066.410 kb on - strand, within ECD_01001 at 1066.471 kb on + strand, within ECD_01001 at 1066.610 kb on - strand, within ECD_01001 at 1066.610 kb on - strand, within ECD_01001 at 1066.646 kb on + strand at 1066.685 kb on - strand at 1066.716 kb on + strand at 1066.850 kb on + strand at 1067.145 kb on - strand at 1067.262 kb on - strand, within ECD_01003 at 1067.449 kb on - strand, within ECD_01003 at 1067.628 kb on - strand, within ECD_01003 at 1067.643 kb on - strand, within ECD_01003 at 1067.643 kb on - strand, within ECD_01003 at 1067.990 kb on + strand at 1068.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,066,266 + ECD_01001 0.30 -0.2 1,066,410 - ECD_01001 0.54 +0.7 1,066,471 + ECD_01001 0.64 +0.2 1,066,610 - ECD_01001 0.87 +0.9 1,066,610 - ECD_01001 0.87 -0.0 1,066,646 + -0.6 1,066,685 - -0.3 1,066,716 + +0.4 1,066,850 + +1.2 1,067,145 - +0.1 1,067,262 - ECD_01003 0.13 -1.2 1,067,449 - ECD_01003 0.33 -0.1 1,067,628 - ECD_01003 0.53 -0.7 1,067,643 - ECD_01003 0.54 -1.2 1,067,643 - ECD_01003 0.54 -0.9 1,067,990 + +0.9 1,068,120 - +0.8
Or see this region's nucleotide sequence