Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00997 and ECD_00998 overlap by 28 nucleotides ECD_00998 and ECD_00999 are separated by 129 nucleotides ECD_00999 and ECD_01000 overlap by 1 nucleotides
ECD_00997: ECD_00997 - periplasmic sensory protein associated with the TorRS two-component regulatory system, at 1,060,549 to 1,061,577
_00997
ECD_00998: ECD_00998 - response regulator in two-component regulatory system with TorS, at 1,061,550 to 1,062,242
_00998
ECD_00999: ECD_00999 - trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit, at 1,062,372 to 1,063,544
_00999
ECD_01000: ECD_01000 - trimethylamine N-oxide (TMAO) reductase I, catalytic subunit, at 1,063,544 to 1,066,090
_01000
Position (kb)
1062
1063
1064 Strain fitness (log2 ratio)
-1
0
1 at 1061.691 kb on - strand, within ECD_00998 at 1062.015 kb on - strand, within ECD_00998 at 1062.190 kb on - strand at 1062.190 kb on - strand at 1062.333 kb on - strand at 1062.469 kb on + strand at 1062.470 kb on - strand at 1062.531 kb on - strand, within ECD_00999 at 1062.531 kb on - strand, within ECD_00999 at 1062.552 kb on + strand, within ECD_00999 at 1062.555 kb on - strand, within ECD_00999 at 1062.614 kb on + strand, within ECD_00999 at 1062.702 kb on - strand, within ECD_00999 at 1062.797 kb on + strand, within ECD_00999 at 1063.148 kb on - strand, within ECD_00999 at 1063.605 kb on + strand at 1063.825 kb on - strand, within ECD_01000 at 1063.876 kb on + strand, within ECD_01000 at 1064.294 kb on + strand, within ECD_01000 at 1064.304 kb on + strand, within ECD_01000 at 1064.452 kb on + strand, within ECD_01000 at 1064.452 kb on + strand, within ECD_01000 at 1064.453 kb on - strand, within ECD_01000 at 1064.460 kb on - strand, within ECD_01000 at 1064.498 kb on + strand, within ECD_01000 at 1064.498 kb on + strand, within ECD_01000 at 1064.498 kb on + strand, within ECD_01000
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,061,691 - ECD_00998 0.20 -0.1 1,062,015 - ECD_00998 0.67 +0.0 1,062,190 - +0.3 1,062,190 - +0.8 1,062,333 - -0.4 1,062,469 + -0.3 1,062,470 - +1.1 1,062,531 - ECD_00999 0.14 -1.2 1,062,531 - ECD_00999 0.14 +1.0 1,062,552 + ECD_00999 0.15 +0.7 1,062,555 - ECD_00999 0.16 +0.2 1,062,614 + ECD_00999 0.21 -1.1 1,062,702 - ECD_00999 0.28 +0.9 1,062,797 + ECD_00999 0.36 +1.1 1,063,148 - ECD_00999 0.66 -1.0 1,063,605 + +0.6 1,063,825 - ECD_01000 0.11 -0.0 1,063,876 + ECD_01000 0.13 -1.3 1,064,294 + ECD_01000 0.29 -0.8 1,064,304 + ECD_01000 0.30 -0.9 1,064,452 + ECD_01000 0.36 -0.2 1,064,452 + ECD_01000 0.36 +0.5 1,064,453 - ECD_01000 0.36 -0.8 1,064,460 - ECD_01000 0.36 +1.6 1,064,498 + ECD_01000 0.37 +0.7 1,064,498 + ECD_01000 0.37 +0.5 1,064,498 + ECD_01000 0.37 -0.2
Or see this region's nucleotide sequence