Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00981 and ECD_00982 are separated by 11 nucleotides ECD_00982 and ECD_04302 are separated by 12 nucleotides ECD_04302 and ECD_00983 are separated by 79 nucleotides
ECD_00981: ECD_00981 - cytochrome bd-II oxidase, subunit I, at 1,042,829 to 1,044,373
_00981
ECD_00982: ECD_00982 - cytochrome bd-II oxidase, subunit II, at 1,044,385 to 1,045,521
_00982
ECD_04302: ECD_04302 - putative cytochrome bd-II oxidase subunit, at 1,045,534 to 1,045,626
_04302
ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004
_00983
Position (kb)
1044
1045
1046 Strain fitness (log2 ratio)
-1
0
1 at 1043.422 kb on + strand, within ECD_00981 at 1043.422 kb on + strand, within ECD_00981 at 1043.444 kb on + strand, within ECD_00981 at 1043.444 kb on + strand, within ECD_00981 at 1043.449 kb on - strand, within ECD_00981 at 1043.727 kb on + strand, within ECD_00981 at 1043.794 kb on + strand, within ECD_00981 at 1043.795 kb on - strand, within ECD_00981 at 1043.808 kb on + strand, within ECD_00981 at 1044.273 kb on - strand at 1044.620 kb on - strand, within ECD_00982 at 1044.643 kb on + strand, within ECD_00982 at 1044.947 kb on + strand, within ECD_00982 at 1045.399 kb on - strand, within ECD_00982 at 1045.399 kb on - strand, within ECD_00982 at 1045.441 kb on + strand at 1045.541 kb on - strand at 1045.544 kb on + strand, within ECD_04302 at 1045.633 kb on + strand at 1045.684 kb on + strand at 1045.932 kb on + strand, within ECD_00983 at 1045.933 kb on - strand, within ECD_00983 at 1046.026 kb on + strand, within ECD_00983 at 1046.107 kb on - strand, within ECD_00983 at 1046.122 kb on + strand, within ECD_00983 at 1046.146 kb on + strand, within ECD_00983 at 1046.147 kb on - strand, within ECD_00983 at 1046.308 kb on + strand, within ECD_00983
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,043,422 + ECD_00981 0.38 -0.5 1,043,422 + ECD_00981 0.38 +1.0 1,043,444 + ECD_00981 0.40 -1.3 1,043,444 + ECD_00981 0.40 -1.1 1,043,449 - ECD_00981 0.40 +0.1 1,043,727 + ECD_00981 0.58 +0.3 1,043,794 + ECD_00981 0.62 +0.3 1,043,795 - ECD_00981 0.63 -0.0 1,043,808 + ECD_00981 0.63 +0.1 1,044,273 - +0.9 1,044,620 - ECD_00982 0.21 +1.4 1,044,643 + ECD_00982 0.23 +0.4 1,044,947 + ECD_00982 0.49 +0.4 1,045,399 - ECD_00982 0.89 +1.0 1,045,399 - ECD_00982 0.89 +0.5 1,045,441 + -1.1 1,045,541 - +0.3 1,045,544 + ECD_04302 0.11 -0.9 1,045,633 + +1.1 1,045,684 + -0.3 1,045,932 + ECD_00983 0.17 +0.6 1,045,933 - ECD_00983 0.17 +1.3 1,046,026 + ECD_00983 0.25 +0.3 1,046,107 - ECD_00983 0.31 -0.1 1,046,122 + ECD_00983 0.32 -0.0 1,046,146 + ECD_00983 0.34 +0.8 1,046,147 - ECD_00983 0.34 -0.4 1,046,308 + ECD_00983 0.46 -0.2
Or see this region's nucleotide sequence