Strain Fitness in Escherichia coli BL21 around ECD_00982

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00981 and ECD_00982 are separated by 11 nucleotidesECD_00982 and ECD_04302 are separated by 12 nucleotidesECD_04302 and ECD_00983 are separated by 79 nucleotides ECD_00981: ECD_00981 - cytochrome bd-II oxidase, subunit I, at 1,042,829 to 1,044,373 _00981 ECD_00982: ECD_00982 - cytochrome bd-II oxidase, subunit II, at 1,044,385 to 1,045,521 _00982 ECD_04302: ECD_04302 - putative cytochrome bd-II oxidase subunit, at 1,045,534 to 1,045,626 _04302 ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004 _00983 Position (kb) 1044 1045 1046Strain fitness (log2 ratio) -1 0 1at 1043.422 kb on + strand, within ECD_00981at 1043.422 kb on + strand, within ECD_00981at 1043.444 kb on + strand, within ECD_00981at 1043.444 kb on + strand, within ECD_00981at 1043.449 kb on - strand, within ECD_00981at 1043.727 kb on + strand, within ECD_00981at 1043.794 kb on + strand, within ECD_00981at 1043.795 kb on - strand, within ECD_00981at 1043.808 kb on + strand, within ECD_00981at 1044.273 kb on - strandat 1044.620 kb on - strand, within ECD_00982at 1044.643 kb on + strand, within ECD_00982at 1044.947 kb on + strand, within ECD_00982at 1045.399 kb on - strand, within ECD_00982at 1045.399 kb on - strand, within ECD_00982at 1045.441 kb on + strandat 1045.541 kb on - strandat 1045.544 kb on + strand, within ECD_04302at 1045.633 kb on + strandat 1045.684 kb on + strandat 1045.932 kb on + strand, within ECD_00983at 1045.933 kb on - strand, within ECD_00983at 1046.026 kb on + strand, within ECD_00983at 1046.107 kb on - strand, within ECD_00983at 1046.122 kb on + strand, within ECD_00983at 1046.146 kb on + strand, within ECD_00983at 1046.147 kb on - strand, within ECD_00983at 1046.308 kb on + strand, within ECD_00983

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,043,422 + ECD_00981 0.38 -0.5
1,043,422 + ECD_00981 0.38 +1.0
1,043,444 + ECD_00981 0.40 -1.3
1,043,444 + ECD_00981 0.40 -1.1
1,043,449 - ECD_00981 0.40 +0.1
1,043,727 + ECD_00981 0.58 +0.3
1,043,794 + ECD_00981 0.62 +0.3
1,043,795 - ECD_00981 0.63 -0.0
1,043,808 + ECD_00981 0.63 +0.1
1,044,273 - +0.9
1,044,620 - ECD_00982 0.21 +1.4
1,044,643 + ECD_00982 0.23 +0.4
1,044,947 + ECD_00982 0.49 +0.4
1,045,399 - ECD_00982 0.89 +1.0
1,045,399 - ECD_00982 0.89 +0.5
1,045,441 + -1.1
1,045,541 - +0.3
1,045,544 + ECD_04302 0.11 -0.9
1,045,633 + +1.1
1,045,684 + -0.3
1,045,932 + ECD_00983 0.17 +0.6
1,045,933 - ECD_00983 0.17 +1.3
1,046,026 + ECD_00983 0.25 +0.3
1,046,107 - ECD_00983 0.31 -0.1
1,046,122 + ECD_00983 0.32 -0.0
1,046,146 + ECD_00983 0.34 +0.8
1,046,147 - ECD_00983 0.34 -0.4
1,046,308 + ECD_00983 0.46 -0.2

Or see this region's nucleotide sequence