Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00949 and ECD_00950 are separated by 173 nucleotides ECD_00950 and ECD_00951 overlap by 4 nucleotides ECD_00951 and ECD_00952 are separated by 243 nucleotides
ECD_00949: ECD_00949 - dihydro-orotate oxidase, FMN-linked, at 1,009,857 to 1,010,867
_00949
ECD_00950: ECD_00950 - FtsZ stabilizer, at 1,011,041 to 1,011,583
_00950
ECD_00951: ECD_00951 - 6-N-hydroxylaminopurine detoxification oxidoreductase, at 1,011,580 to 1,012,689
_00951
ECD_00952: ECD_00952 - 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent, at 1,012,933 to 1,015,041
_00952
Position (kb)
1011
1012
1013 Strain fitness (log2 ratio)
-1
0
1 at 1011.126 kb on + strand, within ECD_00950 at 1011.618 kb on + strand at 1011.619 kb on - strand at 1011.781 kb on - strand, within ECD_00951 at 1011.781 kb on - strand, within ECD_00951 at 1012.013 kb on - strand, within ECD_00951 at 1012.518 kb on + strand, within ECD_00951 at 1012.526 kb on - strand, within ECD_00951 at 1012.560 kb on + strand, within ECD_00951 at 1012.711 kb on + strand at 1012.742 kb on - strand at 1012.744 kb on + strand at 1012.744 kb on + strand at 1012.744 kb on + strand at 1012.749 kb on - strand at 1012.750 kb on + strand at 1012.750 kb on + strand at 1012.893 kb on + strand at 1012.893 kb on + strand at 1013.103 kb on + strand at 1013.125 kb on - strand at 1013.141 kb on + strand at 1013.408 kb on + strand, within ECD_00952 at 1013.408 kb on + strand, within ECD_00952 at 1013.408 kb on + strand, within ECD_00952
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,011,126 + ECD_00950 0.16 +0.0 1,011,618 + -0.3 1,011,619 - -0.5 1,011,781 - ECD_00951 0.18 +0.3 1,011,781 - ECD_00951 0.18 -0.5 1,012,013 - ECD_00951 0.39 +0.7 1,012,518 + ECD_00951 0.85 +1.6 1,012,526 - ECD_00951 0.85 +0.3 1,012,560 + ECD_00951 0.88 -0.4 1,012,711 + -1.7 1,012,742 - -0.8 1,012,744 + +0.0 1,012,744 + -0.5 1,012,744 + +0.6 1,012,749 - +0.3 1,012,750 + -0.4 1,012,750 + +0.9 1,012,893 + -0.5 1,012,893 + -0.1 1,013,103 + +0.0 1,013,125 - +0.6 1,013,141 + +0.6 1,013,408 + ECD_00952 0.23 -1.7 1,013,408 + ECD_00952 0.23 +0.4 1,013,408 + ECD_00952 0.23 +0.1
Or see this region's nucleotide sequence