Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00833 and ECD_00834 are separated by 142 nucleotides ECD_00834 and ECD_00835 overlap by 7 nucleotides ECD_00835 and ECD_00836 overlap by 4 nucleotides ECD_00836 and ECD_00837 overlap by 158 nucleotides ECD_00837 and ECD_00838 overlap by 38 nucleotides ECD_00838 and ECD_00839 overlap by 8 nucleotides
ECD_00833: ECD_00833 - Terminase, ATPase subunit, at 880,980 to 882,746
_00833
ECD_00834: ECD_00834 - putative capsid scaffolding protein, at 882,889 to 883,641
_00834
ECD_00835: ECD_00835 - hypothetical protein, at 883,635 to 883,781
_00835
ECD_00836: ECD_00836 - putative Regulatory protein, at 883,778 to 884,206
_00836
ECD_00837: ECD_00837 - Fels-2 prophage protein, at 884,049 to 884,339
_00837
ECD_00838: ECD_00838 - putative phage tail protein, at 884,302 to 884,733
_00838
ECD_00839: ECD_00839 - putative phage tail protein, at 884,726 to 885,172
_00839
Position (kb) 883
884 Strain fitness (log2 ratio) -1
0
1 at 882.989 kb on - strand, within ECD_00834 at 883.039 kb on + strand, within ECD_00834 at 883.039 kb on + strand, within ECD_00834 at 883.135 kb on + strand, within ECD_00834 at 883.495 kb on - strand, within ECD_00834 at 883.625 kb on + strand at 883.626 kb on - strand at 883.699 kb on - strand, within ECD_00835 at 883.702 kb on + strand, within ECD_00835 at 883.777 kb on + strand at 883.777 kb on + strand at 883.895 kb on - strand, within ECD_00836 at 884.279 kb on + strand, within ECD_00837 at 884.337 kb on + strand at 884.437 kb on + strand, within ECD_00838 at 884.545 kb on - strand, within ECD_00838 at 884.545 kb on - strand, within ECD_00838 at 884.619 kb on + strand, within ECD_00838
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 882,989 - ECD_00834 0.13 -0.9 883,039 + ECD_00834 0.20 -1.3 883,039 + ECD_00834 0.20 -0.8 883,135 + ECD_00834 0.33 +1.3 883,495 - ECD_00834 0.80 -0.6 883,625 + -1.0 883,626 - +1.0 883,699 - ECD_00835 0.44 +1.0 883,702 + ECD_00835 0.46 +0.9 883,777 + +0.4 883,777 + -0.1 883,895 - ECD_00836 0.27 -0.5 884,279 + ECD_00837 0.79 +0.1 884,337 + +0.2 884,437 + ECD_00838 0.31 +0.4 884,545 - ECD_00838 0.56 -0.4 884,545 - ECD_00838 0.56 -0.1 884,619 + ECD_00838 0.73 -0.4
Or see this region's nucleotide sequence