Strain Fitness in Escherichia coli BL21 around ECD_00684

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00683 and ECD_00684 are separated by 15 nucleotidesECD_00684 and ECD_00685 are separated by 300 nucleotides ECD_00683: ECD_00683 - succinate dehydrogenase, flavoprotein subunit, at 714,477 to 716,243 _00683 ECD_00684: ECD_00684 - succinate dehydrogenase, FeS subunit, at 716,259 to 716,975 _00684 ECD_00685: ECD_00685 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding, at 717,276 to 720,077 _00685 Position (kb) 716 717Strain fitness (log2 ratio) -2 -1 0 1at 715.657 kb on + strand, within ECD_00683at 715.883 kb on + strand, within ECD_00683at 715.883 kb on + strand, within ECD_00683at 716.235 kb on - strandat 716.483 kb on + strand, within ECD_00684at 716.616 kb on + strand, within ECD_00684at 716.616 kb on + strand, within ECD_00684at 716.705 kb on + strand, within ECD_00684at 716.705 kb on + strand, within ECD_00684at 716.902 kb on + strand, within ECD_00684at 716.902 kb on + strand, within ECD_00684at 717.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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715,657 + ECD_00683 0.67 +0.8
715,883 + ECD_00683 0.80 +1.1
715,883 + ECD_00683 0.80 +0.3
716,235 - -2.1
716,483 + ECD_00684 0.31 +0.6
716,616 + ECD_00684 0.50 -0.3
716,616 + ECD_00684 0.50 +0.6
716,705 + ECD_00684 0.62 +0.4
716,705 + ECD_00684 0.62 +1.4
716,902 + ECD_00684 0.90 -0.7
716,902 + ECD_00684 0.90 +0.7
717,141 + -0.8

Or see this region's nucleotide sequence