Strain Fitness in Escherichia coli BL21 around ECD_00601

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00599 and ECD_00600 are separated by 100 nucleotidesECD_00600 and ECD_00601 are separated by 109 nucleotidesECD_00601 and ECD_00602 are separated by 139 nucleotides ECD_00599: ECD_00599 - octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase, at 621,999 to 622,640 _00599 ECD_00600: ECD_00600 - UPF0250 family protein, at 622,741 to 623,004 _00600 ECD_00601: ECD_00601 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5), at 623,114 to 624,325 _00601 ECD_00602: ECD_00602 - septal ring protein, suppressor of prc, minor lipoprotein, at 624,465 to 625,553 _00602 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 622.683 kb on - strandat 622.685 kb on - strandat 622.785 kb on - strand, within ECD_00600at 623.028 kb on - strandat 623.032 kb on - strandat 623.032 kb on - strandat 623.073 kb on - strandat 623.073 kb on - strandat 623.073 kb on - strandat 623.073 kb on - strandat 623.305 kb on - strand, within ECD_00601at 623.305 kb on - strand, within ECD_00601at 623.305 kb on - strand, within ECD_00601at 623.305 kb on - strand, within ECD_00601at 623.305 kb on - strand, within ECD_00601at 623.305 kb on - strand, within ECD_00601at 623.349 kb on + strand, within ECD_00601at 623.350 kb on - strand, within ECD_00601at 623.712 kb on - strand, within ECD_00601at 623.763 kb on + strand, within ECD_00601at 623.790 kb on - strand, within ECD_00601at 623.790 kb on - strand, within ECD_00601at 623.833 kb on - strand, within ECD_00601at 623.833 kb on - strand, within ECD_00601at 623.833 kb on - strand, within ECD_00601at 623.923 kb on + strand, within ECD_00601at 624.085 kb on - strand, within ECD_00601at 624.165 kb on + strand, within ECD_00601at 624.180 kb on + strand, within ECD_00601at 624.217 kb on + strandat 624.256 kb on + strandat 624.257 kb on - strandat 624.301 kb on + strandat 624.336 kb on - strandat 624.336 kb on - strandat 624.372 kb on + strandat 624.373 kb on - strandat 624.373 kb on - strandat 624.374 kb on + strandat 624.375 kb on - strandat 624.461 kb on + strandat 624.462 kb on - strandat 624.462 kb on - strandat 624.483 kb on - strandat 624.528 kb on - strandat 624.528 kb on - strandat 624.635 kb on - strand, within ECD_00602at 624.761 kb on + strand, within ECD_00602at 624.928 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.011 kb on - strand, within ECD_00602at 625.086 kb on - strand, within ECD_00602

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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622,683 - +0.7
622,685 - +0.1
622,785 - ECD_00600 0.17 +1.1
623,028 - -0.2
623,032 - +0.2
623,032 - -0.1
623,073 - -0.1
623,073 - -0.3
623,073 - +0.1
623,073 - +0.4
623,305 - ECD_00601 0.16 +0.6
623,305 - ECD_00601 0.16 +1.4
623,305 - ECD_00601 0.16 +0.5
623,305 - ECD_00601 0.16 +0.5
623,305 - ECD_00601 0.16 +0.6
623,305 - ECD_00601 0.16 +1.2
623,349 + ECD_00601 0.19 +2.1
623,350 - ECD_00601 0.19 +0.5
623,712 - ECD_00601 0.49 +0.7
623,763 + ECD_00601 0.54 +1.1
623,790 - ECD_00601 0.56 +0.9
623,790 - ECD_00601 0.56 +0.3
623,833 - ECD_00601 0.59 +0.2
623,833 - ECD_00601 0.59 +0.3
623,833 - ECD_00601 0.59 +1.0
623,923 + ECD_00601 0.67 +1.1
624,085 - ECD_00601 0.80 +0.9
624,165 + ECD_00601 0.87 +0.2
624,180 + ECD_00601 0.88 -0.4
624,217 + +0.2
624,256 + +0.7
624,257 - -0.5
624,301 + +0.9
624,336 - +0.5
624,336 - -0.2
624,372 + +0.4
624,373 - +0.8
624,373 - -1.9
624,374 + +0.2
624,375 - +0.3
624,461 + +0.2
624,462 - +0.0
624,462 - +0.3
624,483 - -0.1
624,528 - +0.3
624,528 - -0.3
624,635 - ECD_00602 0.16 +0.1
624,761 + ECD_00602 0.27 +0.8
624,928 - ECD_00602 0.43 -0.1
625,002 - ECD_00602 0.49 +0.4
625,002 - ECD_00602 0.49 -0.2
625,002 - ECD_00602 0.49 +1.1
625,002 - ECD_00602 0.49 -0.1
625,011 - ECD_00602 0.50 -0.6
625,086 - ECD_00602 0.57 -0.9

Or see this region's nucleotide sequence