Strain Fitness in Escherichia coli BL21 around ECD_00570

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00568 and ECD_00569 are separated by 0 nucleotidesECD_00569 and ECD_00570 overlap by 28 nucleotidesECD_00570 and ECD_00571 are separated by 24 nucleotidesECD_00571 and ECD_00572 overlap by 82 nucleotidesECD_00572 and ECD_00573 are separated by 33 nucleotides ECD_00568: ECD_00568 - methionine aminotransferase, PLP-dependent, at 594,062 to 595,222 _00568 ECD_00569: ECD_00569 - Spo0J family protein, ParB-like nuclease domain, at 595,223 to 595,852 _00569 ECD_00570: ECD_00570 - PAPS reductase-like domain protein, at 595,825 to 596,886 _00570 ECD_00571: ECD_00571 - IS1 protein InsB, at 596,911 to 597,414 _00571 ECD_00572: ECD_00572 - IS1 protein InsA, at 597,333 to 597,608 _00572 ECD_00573: ECD_00573 - thiol:disulfide interchange protein, periplasmic, at 597,642 to 598,403 _00573 Position (kb) 595 596 597Strain fitness (log2 ratio) -1 0 1at 594.843 kb on + strand, within ECD_00568at 594.843 kb on + strand, within ECD_00568at 594.868 kb on - strand, within ECD_00568at 594.903 kb on + strand, within ECD_00568at 594.903 kb on + strand, within ECD_00568at 594.903 kb on + strand, within ECD_00568at 594.903 kb on + strand, within ECD_00568at 594.904 kb on - strand, within ECD_00568at 594.904 kb on - strand, within ECD_00568at 594.944 kb on + strand, within ECD_00568at 595.015 kb on + strand, within ECD_00568at 595.015 kb on + strand, within ECD_00568at 595.047 kb on + strand, within ECD_00568at 595.221 kb on - strandat 595.282 kb on + strandat 595.451 kb on - strand, within ECD_00569at 595.491 kb on - strand, within ECD_00569at 595.567 kb on + strand, within ECD_00569at 595.736 kb on + strand, within ECD_00569at 595.736 kb on + strand, within ECD_00569at 595.840 kb on + strandat 595.841 kb on - strandat 595.841 kb on - strandat 595.882 kb on - strandat 595.883 kb on + strandat 595.952 kb on - strand, within ECD_00570at 595.963 kb on + strand, within ECD_00570at 596.055 kb on - strand, within ECD_00570at 596.123 kb on + strand, within ECD_00570at 596.137 kb on + strand, within ECD_00570at 596.235 kb on + strand, within ECD_00570at 596.268 kb on - strand, within ECD_00570at 596.345 kb on + strand, within ECD_00570at 596.350 kb on + strand, within ECD_00570at 596.350 kb on + strand, within ECD_00570at 596.358 kb on - strand, within ECD_00570at 596.404 kb on - strand, within ECD_00570at 596.445 kb on + strand, within ECD_00570at 596.499 kb on + strand, within ECD_00570at 596.531 kb on + strand, within ECD_00570at 596.532 kb on - strand, within ECD_00570at 596.823 kb on - strandat 596.823 kb on - strandat 596.823 kb on - strandat 596.826 kb on + strandat 596.827 kb on - strandat 597.681 kb on - strandat 597.723 kb on - strand, within ECD_00573at 597.740 kb on - strand, within ECD_00573at 597.740 kb on - strand, within ECD_00573at 597.742 kb on + strand, within ECD_00573at 597.742 kb on + strand, within ECD_00573at 597.819 kb on - strand, within ECD_00573at 597.822 kb on + strand, within ECD_00573at 597.823 kb on - strand, within ECD_00573at 597.840 kb on + strand, within ECD_00573

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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594,843 + ECD_00568 0.67 +0.5
594,843 + ECD_00568 0.67 +0.2
594,868 - ECD_00568 0.69 -0.1
594,903 + ECD_00568 0.72 +0.7
594,903 + ECD_00568 0.72 +0.6
594,903 + ECD_00568 0.72 -0.6
594,903 + ECD_00568 0.72 -0.1
594,904 - ECD_00568 0.73 -1.4
594,904 - ECD_00568 0.73 +0.1
594,944 + ECD_00568 0.76 +0.0
595,015 + ECD_00568 0.82 +1.2
595,015 + ECD_00568 0.82 -0.2
595,047 + ECD_00568 0.85 -0.0
595,221 - -1.0
595,282 + +0.4
595,451 - ECD_00569 0.36 -0.1
595,491 - ECD_00569 0.43 -0.4
595,567 + ECD_00569 0.55 -1.0
595,736 + ECD_00569 0.81 -0.2
595,736 + ECD_00569 0.81 -0.2
595,840 + +0.6
595,841 - -0.2
595,841 - -0.4
595,882 - +0.1
595,883 + +0.3
595,952 - ECD_00570 0.12 -0.3
595,963 + ECD_00570 0.13 +0.7
596,055 - ECD_00570 0.22 +0.5
596,123 + ECD_00570 0.28 -0.2
596,137 + ECD_00570 0.29 +1.0
596,235 + ECD_00570 0.39 +0.2
596,268 - ECD_00570 0.42 +0.2
596,345 + ECD_00570 0.49 +0.2
596,350 + ECD_00570 0.49 +0.6
596,350 + ECD_00570 0.49 +0.6
596,358 - ECD_00570 0.50 +0.6
596,404 - ECD_00570 0.55 +0.5
596,445 + ECD_00570 0.58 +0.0
596,499 + ECD_00570 0.63 +0.0
596,531 + ECD_00570 0.66 +1.2
596,532 - ECD_00570 0.67 +0.9
596,823 - +0.1
596,823 - +0.3
596,823 - +0.1
596,826 + +1.3
596,827 - -0.3
597,681 - +0.3
597,723 - ECD_00573 0.11 +0.0
597,740 - ECD_00573 0.13 +0.6
597,740 - ECD_00573 0.13 -0.4
597,742 + ECD_00573 0.13 +0.2
597,742 + ECD_00573 0.13 -0.4
597,819 - ECD_00573 0.23 +0.3
597,822 + ECD_00573 0.24 -0.0
597,823 - ECD_00573 0.24 +0.0
597,840 + ECD_00573 0.26 +1.2

Or see this region's nucleotide sequence