Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00387 and ECD_00388 are separated by 245 nucleotides ECD_00388 and ECD_00389 are separated by 125 nucleotides
ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115
_00387
ECD_00388: ECD_00388 - proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases, at 424,361 to 424,984
_00388
ECD_00389: ECD_00389 - ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease, at 425,110 to 426,384
_00389
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 423.395 kb on + strand, within ECD_00387 at 423.477 kb on + strand, within ECD_00387 at 423.478 kb on - strand, within ECD_00387 at 423.500 kb on + strand, within ECD_00387 at 423.500 kb on + strand, within ECD_00387 at 423.604 kb on + strand, within ECD_00387 at 423.839 kb on + strand, within ECD_00387 at 424.127 kb on + strand at 424.250 kb on - strand at 424.279 kb on + strand at 424.291 kb on + strand at 424.315 kb on + strand at 424.367 kb on + strand at 424.460 kb on + strand, within ECD_00388 at 424.460 kb on + strand, within ECD_00388 at 424.470 kb on + strand, within ECD_00388 at 424.576 kb on + strand, within ECD_00388 at 424.576 kb on + strand, within ECD_00388 at 424.580 kb on + strand, within ECD_00388 at 424.581 kb on - strand, within ECD_00388 at 424.591 kb on + strand, within ECD_00388 at 424.591 kb on + strand, within ECD_00388 at 424.627 kb on + strand, within ECD_00388 at 424.627 kb on + strand, within ECD_00388 at 424.628 kb on - strand, within ECD_00388 at 424.631 kb on + strand, within ECD_00388 at 424.631 kb on + strand, within ECD_00388 at 424.631 kb on + strand, within ECD_00388 at 424.884 kb on + strand, within ECD_00388 at 424.884 kb on + strand, within ECD_00388 at 425.010 kb on + strand at 425.010 kb on + strand at 425.010 kb on + strand at 425.014 kb on + strand at 425.036 kb on + strand at 425.149 kb on + strand at 425.212 kb on + strand at 425.212 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.338 kb on + strand, within ECD_00389 at 425.338 kb on + strand, within ECD_00389 at 425.386 kb on + strand, within ECD_00389 at 425.386 kb on + strand, within ECD_00389 at 425.386 kb on + strand, within ECD_00389 at 425.395 kb on + strand, within ECD_00389 at 425.395 kb on + strand, within ECD_00389 at 425.567 kb on - strand, within ECD_00389 at 425.646 kb on + strand, within ECD_00389 at 425.760 kb on + strand, within ECD_00389
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 423,395 + ECD_00387 0.44 -0.1 423,477 + ECD_00387 0.51 -0.7 423,478 - ECD_00387 0.51 +0.8 423,500 + ECD_00387 0.53 -0.5 423,500 + ECD_00387 0.53 -1.8 423,604 + ECD_00387 0.61 -0.3 423,839 + ECD_00387 0.79 -0.9 424,127 + +0.3 424,250 - -0.4 424,279 + +0.6 424,291 + -0.7 424,315 + -0.4 424,367 + +1.7 424,460 + ECD_00388 0.16 +1.7 424,460 + ECD_00388 0.16 +1.0 424,470 + ECD_00388 0.17 +1.3 424,576 + ECD_00388 0.34 +1.3 424,576 + ECD_00388 0.34 +1.6 424,580 + ECD_00388 0.35 -0.1 424,581 - ECD_00388 0.35 +3.0 424,591 + ECD_00388 0.37 -1.7 424,591 + ECD_00388 0.37 +1.4 424,627 + ECD_00388 0.43 +0.9 424,627 + ECD_00388 0.43 +0.5 424,628 - ECD_00388 0.43 +2.5 424,631 + ECD_00388 0.43 +1.4 424,631 + ECD_00388 0.43 +1.3 424,631 + ECD_00388 0.43 +0.3 424,884 + ECD_00388 0.84 +1.0 424,884 + ECD_00388 0.84 +1.0 425,010 + +0.5 425,010 + -0.2 425,010 + -0.0 425,014 + +0.3 425,036 + +0.4 425,149 + +1.4 425,212 + +0.2 425,212 + +1.1 425,237 + +0.5 425,237 + +0.4 425,338 + ECD_00389 0.18 +0.2 425,338 + ECD_00389 0.18 +0.8 425,386 + ECD_00389 0.22 +1.2 425,386 + ECD_00389 0.22 +0.4 425,386 + ECD_00389 0.22 +0.8 425,395 + ECD_00389 0.22 -0.5 425,395 + ECD_00389 0.22 +0.2 425,567 - ECD_00389 0.36 +0.8 425,646 + ECD_00389 0.42 +0.8 425,760 + ECD_00389 0.51 +0.2
Or see this region's nucleotide sequence