Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00315 and ECD_00316 are separated by 12 nucleotides ECD_00316 and ECD_00317 overlap by 4 nucleotides ECD_00317 and ECD_00318 overlap by 4 nucleotides ECD_00318 and ECD_00319 are separated by 106 nucleotides
ECD_00315: ECD_00315 - taurine ABC transporter periplasmic binding protein, at 351,119 to 352,081
_00315
ECD_00316: ECD_00316 - taurine ABC transporter ATPase, at 352,094 to 352,861
_00316
ECD_00317: ECD_00317 - taurine ABC transporter permease, at 352,858 to 353,685
_00317
ECD_00318: ECD_00318 - taurine dioxygenase, 2-oxoglutarate-dependent, at 353,682 to 354,533
_00318
ECD_00319: ECD_00319 - 5-aminolevulinate dehydratase (porphobilinogen synthase), at 354,640 to 355,614
_00319
Position (kb) 352
353
354 Strain fitness (log2 ratio) -1
0
1
2 at 351.928 kb on + strand, within ECD_00315 at 351.928 kb on + strand, within ECD_00315 at 351.929 kb on - strand, within ECD_00315 at 351.932 kb on + strand, within ECD_00315 at 352.046 kb on + strand at 352.055 kb on + strand at 352.080 kb on - strand at 352.124 kb on + strand at 352.150 kb on + strand at 352.180 kb on - strand, within ECD_00316 at 352.251 kb on - strand, within ECD_00316 at 352.286 kb on - strand, within ECD_00316 at 352.391 kb on - strand, within ECD_00316 at 352.543 kb on - strand, within ECD_00316 at 352.545 kb on + strand, within ECD_00316 at 352.659 kb on + strand, within ECD_00316 at 352.659 kb on + strand, within ECD_00316 at 352.659 kb on + strand, within ECD_00316 at 352.659 kb on + strand, within ECD_00316 at 352.825 kb on - strand at 352.935 kb on - strand at 353.070 kb on + strand, within ECD_00317 at 353.070 kb on + strand, within ECD_00317 at 353.071 kb on - strand, within ECD_00317 at 353.129 kb on + strand, within ECD_00317 at 353.245 kb on + strand, within ECD_00317 at 353.298 kb on - strand, within ECD_00317 at 353.305 kb on + strand, within ECD_00317 at 353.305 kb on + strand, within ECD_00317 at 353.494 kb on - strand, within ECD_00317 at 353.541 kb on + strand, within ECD_00317 at 353.542 kb on - strand, within ECD_00317 at 353.718 kb on + strand at 353.787 kb on + strand, within ECD_00318 at 353.834 kb on + strand, within ECD_00318 at 353.885 kb on + strand, within ECD_00318 at 353.951 kb on + strand, within ECD_00318 at 353.978 kb on + strand, within ECD_00318 at 354.166 kb on - strand, within ECD_00318 at 354.172 kb on - strand, within ECD_00318 at 354.236 kb on - strand, within ECD_00318 at 354.303 kb on - strand, within ECD_00318 at 354.371 kb on + strand, within ECD_00318 at 354.447 kb on + strand, within ECD_00318 at 354.448 kb on - strand at 354.462 kb on + strand at 354.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 351,928 + ECD_00315 0.84 -0.1 351,928 + ECD_00315 0.84 +1.2 351,929 - ECD_00315 0.84 +2.2 351,932 + ECD_00315 0.84 +0.3 352,046 + +0.6 352,055 + -0.2 352,080 - -0.2 352,124 + -0.1 352,150 + -0.4 352,180 - ECD_00316 0.11 +0.1 352,251 - ECD_00316 0.20 +0.3 352,286 - ECD_00316 0.25 -0.8 352,391 - ECD_00316 0.39 -0.9 352,543 - ECD_00316 0.58 -1.2 352,545 + ECD_00316 0.59 -0.4 352,659 + ECD_00316 0.74 +0.3 352,659 + ECD_00316 0.74 +0.1 352,659 + ECD_00316 0.74 +0.2 352,659 + ECD_00316 0.74 +1.5 352,825 - +0.3 352,935 - -0.1 353,070 + ECD_00317 0.26 +1.8 353,070 + ECD_00317 0.26 -0.1 353,071 - ECD_00317 0.26 -0.4 353,129 + ECD_00317 0.33 +0.1 353,245 + ECD_00317 0.47 +1.3 353,298 - ECD_00317 0.53 +0.2 353,305 + ECD_00317 0.54 +0.4 353,305 + ECD_00317 0.54 -0.2 353,494 - ECD_00317 0.77 +0.2 353,541 + ECD_00317 0.82 +0.1 353,542 - ECD_00317 0.83 +0.2 353,718 + +0.1 353,787 + ECD_00318 0.12 +1.2 353,834 + ECD_00318 0.18 +0.3 353,885 + ECD_00318 0.24 +0.4 353,951 + ECD_00318 0.32 +0.5 353,978 + ECD_00318 0.35 -0.8 354,166 - ECD_00318 0.57 +1.0 354,172 - ECD_00318 0.58 +0.0 354,236 - ECD_00318 0.65 -0.9 354,303 - ECD_00318 0.73 -0.6 354,371 + ECD_00318 0.81 +0.2 354,447 + ECD_00318 0.90 -0.2 354,448 - +1.2 354,462 + -0.3 354,463 - -0.5
Or see this region's nucleotide sequence