Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00201 and ECD_00202 are separated by 240 nucleotides ECD_00202 and ECD_00203 are separated by 3 nucleotides ECD_00203 and ECD_00204 are separated by 47 nucleotides
ECD_00201: ECD_00201 - LysR family putative transcriptional regulator, at 232,894 to 233,808
_00201
ECD_00202: ECD_00202 - endo/exonuclease/phosphatase family protein, at 234,049 to 234,849
_00202
ECD_00203: ECD_00203 - putative S-adenosyl-L-methionine-dependent methyltransferase, at 234,853 to 235,476
_00203
ECD_00204: ECD_00204 - putative membrane-bound lytic murein transglycosylase D, at 235,524 to 236,882
_00204
Position (kb) 234
235 Strain fitness (log2 ratio) -2
-1
0
1 at 233.163 kb on - strand, within ECD_00201 at 233.163 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.191 kb on - strand, within ECD_00201 at 233.191 kb on - strand, within ECD_00201 at 233.368 kb on - strand, within ECD_00201 at 233.472 kb on + strand, within ECD_00201 at 233.545 kb on - strand, within ECD_00201 at 233.638 kb on - strand, within ECD_00201 at 233.729 kb on - strand at 233.729 kb on - strand at 233.892 kb on + strand at 233.944 kb on + strand at 233.944 kb on + strand at 233.995 kb on + strand at 234.027 kb on - strand at 234.065 kb on - strand at 234.201 kb on - strand, within ECD_00202 at 234.203 kb on - strand, within ECD_00202 at 234.203 kb on - strand, within ECD_00202 at 234.203 kb on - strand, within ECD_00202 at 234.299 kb on + strand, within ECD_00202 at 234.303 kb on - strand, within ECD_00202 at 234.303 kb on - strand, within ECD_00202 at 234.319 kb on - strand, within ECD_00202 at 234.510 kb on + strand, within ECD_00202 at 234.513 kb on - strand, within ECD_00202 at 234.550 kb on - strand, within ECD_00202 at 234.552 kb on + strand, within ECD_00202 at 234.552 kb on + strand, within ECD_00202 at 234.553 kb on - strand, within ECD_00202 at 234.553 kb on - strand, within ECD_00202 at 234.582 kb on - strand, within ECD_00202 at 234.636 kb on + strand, within ECD_00202 at 234.654 kb on - strand, within ECD_00202 at 234.848 kb on - strand at 234.852 kb on + strand at 234.852 kb on + strand at 234.919 kb on + strand, within ECD_00203 at 234.984 kb on + strand, within ECD_00203 at 234.984 kb on + strand, within ECD_00203 at 235.004 kb on - strand, within ECD_00203 at 235.281 kb on + strand, within ECD_00203 at 235.282 kb on - strand, within ECD_00203 at 235.286 kb on + strand, within ECD_00203 at 235.296 kb on + strand, within ECD_00203 at 235.356 kb on - strand, within ECD_00203 at 235.362 kb on + strand, within ECD_00203 at 235.455 kb on - strand at 235.464 kb on + strand at 235.510 kb on + strand at 235.511 kb on - strand at 235.679 kb on - strand, within ECD_00204 at 235.679 kb on - strand, within ECD_00204 at 235.679 kb on - strand, within ECD_00204 at 235.683 kb on - strand, within ECD_00204 at 235.683 kb on - strand, within ECD_00204 at 235.683 kb on - strand, within ECD_00204 at 235.683 kb on - strand, within ECD_00204 at 235.761 kb on - strand, within ECD_00204 at 235.804 kb on - strand, within ECD_00204 at 235.849 kb on - strand, within ECD_00204 at 235.849 kb on - strand, within ECD_00204 at 235.849 kb on - strand, within ECD_00204
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 233,163 - ECD_00201 0.29 -0.5 233,163 - ECD_00201 0.29 +0.7 233,177 - ECD_00201 0.31 +0.1 233,177 - ECD_00201 0.31 -0.2 233,177 - ECD_00201 0.31 +0.8 233,177 - ECD_00201 0.31 -0.8 233,191 - ECD_00201 0.32 +0.5 233,191 - ECD_00201 0.32 -1.0 233,368 - ECD_00201 0.52 +1.0 233,472 + ECD_00201 0.63 +0.7 233,545 - ECD_00201 0.71 +0.5 233,638 - ECD_00201 0.81 +0.6 233,729 - +1.0 233,729 - +0.8 233,892 + +0.2 233,944 + +1.2 233,944 + +0.2 233,995 + -1.0 234,027 - +0.4 234,065 - -0.1 234,201 - ECD_00202 0.19 +0.5 234,203 - ECD_00202 0.19 -2.0 234,203 - ECD_00202 0.19 +1.5 234,203 - ECD_00202 0.19 +0.3 234,299 + ECD_00202 0.31 -0.2 234,303 - ECD_00202 0.32 +0.2 234,303 - ECD_00202 0.32 -0.5 234,319 - ECD_00202 0.34 +0.7 234,510 + ECD_00202 0.58 +1.2 234,513 - ECD_00202 0.58 +0.5 234,550 - ECD_00202 0.63 +0.6 234,552 + ECD_00202 0.63 +0.7 234,552 + ECD_00202 0.63 +1.5 234,553 - ECD_00202 0.63 +1.1 234,553 - ECD_00202 0.63 -0.5 234,582 - ECD_00202 0.67 -0.1 234,636 + ECD_00202 0.73 +0.7 234,654 - ECD_00202 0.76 +0.6 234,848 - +0.5 234,852 + +0.4 234,852 + +0.2 234,919 + ECD_00203 0.11 -0.0 234,984 + ECD_00203 0.21 -0.4 234,984 + ECD_00203 0.21 -0.1 235,004 - ECD_00203 0.24 -0.3 235,281 + ECD_00203 0.69 -0.2 235,282 - ECD_00203 0.69 +1.2 235,286 + ECD_00203 0.69 +0.3 235,296 + ECD_00203 0.71 -0.4 235,356 - ECD_00203 0.81 -0.7 235,362 + ECD_00203 0.82 +1.1 235,455 - +0.6 235,464 + +0.6 235,510 + -0.1 235,511 - +0.3 235,679 - ECD_00204 0.11 +0.1 235,679 - ECD_00204 0.11 -0.3 235,679 - ECD_00204 0.11 -0.0 235,683 - ECD_00204 0.12 +0.1 235,683 - ECD_00204 0.12 -0.4 235,683 - ECD_00204 0.12 -0.1 235,683 - ECD_00204 0.12 -0.2 235,761 - ECD_00204 0.17 -0.4 235,804 - ECD_00204 0.21 -0.3 235,849 - ECD_00204 0.24 +0.2 235,849 - ECD_00204 0.24 -1.3 235,849 - ECD_00204 0.24 +1.5
Or see this region's nucleotide sequence