Strain Fitness in Escherichia coli BL21 around ECD_00021

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00020 and ECD_00021 are separated by 12 nucleotidesECD_00021 and ECD_00022 are separated by 432 nucleotides ECD_00020: ECD_00020 - hypothetical protein, at 19,658 to 20,617 _00020 ECD_00021: ECD_00021 - putative usher protein, at 20,630 to 21,775 _00021 ECD_00022: ECD_00022 - hypothetical protein, at 22,208 to 22,912 _00022 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1at 19.654 kb on + strandat 19.660 kb on - strandat 19.660 kb on - strandat 19.715 kb on - strandat 19.722 kb on + strandat 19.959 kb on - strand, within ECD_00020at 20.517 kb on - strand, within ECD_00020at 20.852 kb on + strand, within ECD_00021at 20.853 kb on - strand, within ECD_00021at 21.201 kb on + strand, within ECD_00021at 21.213 kb on - strand, within ECD_00021at 21.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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19,654 + -0.0
19,660 - +0.3
19,660 - -0.3
19,715 - +0.3
19,722 + -0.6
19,959 - ECD_00020 0.31 +0.6
20,517 - ECD_00020 0.89 +0.3
20,852 + ECD_00021 0.19 -1.8
20,853 - ECD_00021 0.19 +1.2
21,201 + ECD_00021 0.50 +0.9
21,213 - ECD_00021 0.51 -1.3
21,862 + -0.9

Or see this region's nucleotide sequence