Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00002 and ECD_r00003 are separated by 188 nucleotides ECD_r00003 and ECD_t00003 are separated by 52 nucleotides ECD_t00003 and ECD_00200 are separated by 162 nucleotides ECD_00200 and ECD_00201 overlap by 4 nucleotides
ECD_r00002: ECD_r00002 - 23S ribosomal RNA, at 228,589 to 231,494
_r00002
ECD_r00003: ECD_r00003 - 5S ribosomal RNA, at 231,683 to 231,802
_r00003
ECD_t00003: ECD_t00003 - tRNA-Asp, at 231,855 to 231,931
_t00003
ECD_00200: ECD_00200 - 2,5-diketo-D-gluconate reductase B, at 232,094 to 232,897
_00200
ECD_00201: ECD_00201 - LysR family putative transcriptional regulator, at 232,894 to 233,808
_00201
Position (kb) 231
232 Strain fitness (log2 ratio) -1
0
1 at 231.934 kb on + strand at 231.934 kb on + strand at 231.937 kb on + strand at 232.362 kb on - strand, within ECD_00200 at 232.424 kb on - strand, within ECD_00200 at 232.566 kb on - strand, within ECD_00200 at 232.625 kb on + strand, within ECD_00200 at 232.625 kb on + strand, within ECD_00200 at 232.625 kb on + strand, within ECD_00200 at 232.626 kb on - strand, within ECD_00200 at 232.626 kb on - strand, within ECD_00200 at 232.646 kb on - strand, within ECD_00200 at 232.895 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 231,934 + -0.2 231,934 + -0.1 231,937 + -0.0 232,362 - ECD_00200 0.33 +0.3 232,424 - ECD_00200 0.41 +0.7 232,566 - ECD_00200 0.59 +0.6 232,625 + ECD_00200 0.66 +0.4 232,625 + ECD_00200 0.66 +0.5 232,625 + ECD_00200 0.66 +1.3 232,626 - ECD_00200 0.66 +0.8 232,626 - ECD_00200 0.66 +0.3 232,646 - ECD_00200 0.69 +0.8 232,895 + -0.9
Or see this region's nucleotide sequence