Strain Fitness in Escherichia coli BL21 around ECD_04245

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04243 and ECD_04244 are separated by 37 nucleotidesECD_04244 and ECD_04245 are separated by 140 nucleotidesECD_04245 and ECD_t00084 are separated by 38 nucleotidesECD_t00084 and ECD_t00085 are separated by 34 nucleotidesECD_t00085 and ECD_t00086 are separated by 28 nucleotidesECD_t00086 and ECD_04246 are separated by 267 nucleotides ECD_04243: ECD_04243 - bgl operon transcriptional activator, at 4,522,535 to 4,523,212 _04243 ECD_04244: ECD_04244 - ferric iron reductase involved in ferric hydroximate transport, at 4,523,250 to 4,524,038 _04244 ECD_04245: ECD_04245 - uncharacterized protein, at 4,524,179 to 4,524,415 _04245 ECD_t00084: ECD_t00084 - tRNA-Leu, at 4,524,454 to 4,524,540 _t00084 ECD_t00085: ECD_t00085 - tRNA-Leu, at 4,524,575 to 4,524,661 _t00085 ECD_t00086: ECD_t00086 - tRNA-Leu, at 4,524,690 to 4,524,776 _t00086 ECD_04246: ECD_04246 - 16S rRNA m(2)G1207 methyltransferase, SAM-dependent, at 4,525,044 to 4,526,075 _04246 Position (kb) 4524 4525Strain fitness (log2 ratio) -2 -1 0 1 2at 4523.191 kb on + strandat 4523.192 kb on - strandat 4523.341 kb on - strand, within ECD_04244at 4523.363 kb on + strand, within ECD_04244at 4523.364 kb on - strand, within ECD_04244at 4523.458 kb on + strand, within ECD_04244at 4523.458 kb on + strand, within ECD_04244at 4523.492 kb on + strand, within ECD_04244at 4523.493 kb on - strand, within ECD_04244at 4523.523 kb on + strand, within ECD_04244at 4523.685 kb on + strand, within ECD_04244at 4523.685 kb on + strand, within ECD_04244at 4523.685 kb on + strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.743 kb on + strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.807 kb on - strand, within ECD_04244at 4523.810 kb on + strand, within ECD_04244at 4523.810 kb on + strand, within ECD_04244at 4523.810 kb on + strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.821 kb on + strand, within ECD_04244at 4523.841 kb on + strand, within ECD_04244at 4523.841 kb on + strand, within ECD_04244at 4523.842 kb on - strand, within ECD_04244at 4523.882 kb on + strand, within ECD_04244at 4524.013 kb on + strandat 4524.090 kb on + strandat 4524.190 kb on + strandat 4524.190 kb on + strandat 4524.190 kb on + strandat 4524.259 kb on - strand, within ECD_04245at 4524.301 kb on - strand, within ECD_04245at 4524.301 kb on - strand, within ECD_04245at 4524.341 kb on + strand, within ECD_04245at 4524.342 kb on - strand, within ECD_04245at 4524.342 kb on - strand, within ECD_04245at 4524.370 kb on + strand, within ECD_04245at 4524.371 kb on - strand, within ECD_04245at 4524.371 kb on - strand, within ECD_04245at 4524.445 kb on - strandat 4524.445 kb on - strandat 4524.552 kb on - strandat 4524.620 kb on - strand, within ECD_t00085at 4524.620 kb on - strand, within ECD_t00085at 4524.620 kb on - strand, within ECD_t00085at 4524.676 kb on - strandat 4524.805 kb on - strandat 4524.846 kb on + strandat 4524.846 kb on + strandat 4524.850 kb on + strandat 4524.850 kb on + strandat 4524.851 kb on - strandat 4524.869 kb on - strandat 4524.914 kb on + strandat 4524.914 kb on + strandat 4524.957 kb on + strandat 4524.966 kb on + strandat 4524.967 kb on - strandat 4525.001 kb on + strandat 4525.045 kb on + strandat 4525.045 kb on + strandat 4525.046 kb on - strandat 4525.081 kb on + strandat 4525.193 kb on + strand, within ECD_04246at 4525.196 kb on + strand, within ECD_04246at 4525.197 kb on - strand, within ECD_04246at 4525.287 kb on - strand, within ECD_04246at 4525.378 kb on - strand, within ECD_04246

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,523,191 + +0.8
4,523,192 - +0.9
4,523,341 - ECD_04244 0.12 +1.0
4,523,363 + ECD_04244 0.14 +0.6
4,523,364 - ECD_04244 0.14 +0.2
4,523,458 + ECD_04244 0.26 +0.6
4,523,458 + ECD_04244 0.26 +0.5
4,523,492 + ECD_04244 0.31 +0.7
4,523,493 - ECD_04244 0.31 -0.8
4,523,523 + ECD_04244 0.35 +1.3
4,523,685 + ECD_04244 0.55 +0.1
4,523,685 + ECD_04244 0.55 +1.2
4,523,685 + ECD_04244 0.55 +0.1
4,523,686 - ECD_04244 0.55 +0.1
4,523,686 - ECD_04244 0.55 +0.7
4,523,686 - ECD_04244 0.55 -0.3
4,523,686 - ECD_04244 0.55 +0.1
4,523,743 + ECD_04244 0.62 +1.8
4,523,744 - ECD_04244 0.63 +0.0
4,523,744 - ECD_04244 0.63 +1.3
4,523,744 - ECD_04244 0.63 +0.3
4,523,744 - ECD_04244 0.63 -0.1
4,523,744 - ECD_04244 0.63 -0.0
4,523,744 - ECD_04244 0.63 +0.8
4,523,807 - ECD_04244 0.71 -0.4
4,523,810 + ECD_04244 0.71 -0.3
4,523,810 + ECD_04244 0.71 +0.7
4,523,810 + ECD_04244 0.71 -0.4
4,523,811 - ECD_04244 0.71 +0.0
4,523,811 - ECD_04244 0.71 -0.8
4,523,811 - ECD_04244 0.71 -0.4
4,523,811 - ECD_04244 0.71 -0.8
4,523,811 - ECD_04244 0.71 -0.1
4,523,821 + ECD_04244 0.72 -0.4
4,523,841 + ECD_04244 0.75 +0.1
4,523,841 + ECD_04244 0.75 +1.6
4,523,842 - ECD_04244 0.75 +0.1
4,523,882 + ECD_04244 0.80 +0.5
4,524,013 + +0.8
4,524,090 + +0.6
4,524,190 + -0.0
4,524,190 + +0.4
4,524,190 + +0.7
4,524,259 - ECD_04245 0.34 +0.2
4,524,301 - ECD_04245 0.51 -0.3
4,524,301 - ECD_04245 0.51 +0.7
4,524,341 + ECD_04245 0.68 -0.2
4,524,342 - ECD_04245 0.69 +0.2
4,524,342 - ECD_04245 0.69 +2.0
4,524,370 + ECD_04245 0.81 +0.6
4,524,371 - ECD_04245 0.81 +0.4
4,524,371 - ECD_04245 0.81 +0.2
4,524,445 - +0.8
4,524,445 - -0.3
4,524,552 - +0.4
4,524,620 - ECD_t00085 0.52 +0.3
4,524,620 - ECD_t00085 0.52 -0.1
4,524,620 - ECD_t00085 0.52 -0.3
4,524,676 - -0.2
4,524,805 - +0.1
4,524,846 + +0.5
4,524,846 + +0.2
4,524,850 + +0.7
4,524,850 + +0.3
4,524,851 - +0.4
4,524,869 - +0.1
4,524,914 + -0.5
4,524,914 + +0.2
4,524,957 + -0.7
4,524,966 + -1.8
4,524,967 - +0.6
4,525,001 + +1.1
4,525,045 + +0.5
4,525,045 + +0.1
4,525,046 - +0.4
4,525,081 + -0.0
4,525,193 + ECD_04246 0.14 +0.7
4,525,196 + ECD_04246 0.15 -0.3
4,525,197 - ECD_04246 0.15 +0.8
4,525,287 - ECD_04246 0.24 +0.7
4,525,378 - ECD_04246 0.32 +1.0

Or see this region's nucleotide sequence