Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04243 and ECD_04244 are separated by 37 nucleotides ECD_04244 and ECD_04245 are separated by 140 nucleotides ECD_04245 and ECD_t00084 are separated by 38 nucleotides ECD_t00084 and ECD_t00085 are separated by 34 nucleotides ECD_t00085 and ECD_t00086 are separated by 28 nucleotides ECD_t00086 and ECD_04246 are separated by 267 nucleotides
ECD_04243: ECD_04243 - bgl operon transcriptional activator, at 4,522,535 to 4,523,212
_04243
ECD_04244: ECD_04244 - ferric iron reductase involved in ferric hydroximate transport, at 4,523,250 to 4,524,038
_04244
ECD_04245: ECD_04245 - uncharacterized protein, at 4,524,179 to 4,524,415
_04245
ECD_t00084: ECD_t00084 - tRNA-Leu, at 4,524,454 to 4,524,540
_t00084
ECD_t00085: ECD_t00085 - tRNA-Leu, at 4,524,575 to 4,524,661
_t00085
ECD_t00086: ECD_t00086 - tRNA-Leu, at 4,524,690 to 4,524,776
_t00086
ECD_04246: ECD_04246 - 16S rRNA m(2)G1207 methyltransferase, SAM-dependent, at 4,525,044 to 4,526,075
_04246
Position (kb)
4524
4525 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4523.191 kb on + strand at 4523.192 kb on - strand at 4523.341 kb on - strand, within ECD_04244 at 4523.363 kb on + strand, within ECD_04244 at 4523.364 kb on - strand, within ECD_04244 at 4523.458 kb on + strand, within ECD_04244 at 4523.458 kb on + strand, within ECD_04244 at 4523.492 kb on + strand, within ECD_04244 at 4523.493 kb on - strand, within ECD_04244 at 4523.523 kb on + strand, within ECD_04244 at 4523.685 kb on + strand, within ECD_04244 at 4523.685 kb on + strand, within ECD_04244 at 4523.685 kb on + strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.743 kb on + strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.807 kb on - strand, within ECD_04244 at 4523.810 kb on + strand, within ECD_04244 at 4523.810 kb on + strand, within ECD_04244 at 4523.810 kb on + strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.821 kb on + strand, within ECD_04244 at 4523.841 kb on + strand, within ECD_04244 at 4523.841 kb on + strand, within ECD_04244 at 4523.842 kb on - strand, within ECD_04244 at 4523.882 kb on + strand, within ECD_04244 at 4524.013 kb on + strand at 4524.090 kb on + strand at 4524.190 kb on + strand at 4524.190 kb on + strand at 4524.190 kb on + strand at 4524.259 kb on - strand, within ECD_04245 at 4524.301 kb on - strand, within ECD_04245 at 4524.301 kb on - strand, within ECD_04245 at 4524.341 kb on + strand, within ECD_04245 at 4524.342 kb on - strand, within ECD_04245 at 4524.342 kb on - strand, within ECD_04245 at 4524.370 kb on + strand, within ECD_04245 at 4524.371 kb on - strand, within ECD_04245 at 4524.371 kb on - strand, within ECD_04245 at 4524.445 kb on - strand at 4524.445 kb on - strand at 4524.552 kb on - strand at 4524.620 kb on - strand, within ECD_t00085 at 4524.620 kb on - strand, within ECD_t00085 at 4524.620 kb on - strand, within ECD_t00085 at 4524.676 kb on - strand at 4524.805 kb on - strand at 4524.846 kb on + strand at 4524.846 kb on + strand at 4524.850 kb on + strand at 4524.850 kb on + strand at 4524.851 kb on - strand at 4524.869 kb on - strand at 4524.914 kb on + strand at 4524.914 kb on + strand at 4524.957 kb on + strand at 4524.966 kb on + strand at 4524.967 kb on - strand at 4525.001 kb on + strand at 4525.045 kb on + strand at 4525.045 kb on + strand at 4525.046 kb on - strand at 4525.081 kb on + strand at 4525.193 kb on + strand, within ECD_04246 at 4525.196 kb on + strand, within ECD_04246 at 4525.197 kb on - strand, within ECD_04246 at 4525.287 kb on - strand, within ECD_04246 at 4525.378 kb on - strand, within ECD_04246
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,523,191 + +0.8 4,523,192 - +0.9 4,523,341 - ECD_04244 0.12 +1.0 4,523,363 + ECD_04244 0.14 +0.6 4,523,364 - ECD_04244 0.14 +0.2 4,523,458 + ECD_04244 0.26 +0.6 4,523,458 + ECD_04244 0.26 +0.5 4,523,492 + ECD_04244 0.31 +0.7 4,523,493 - ECD_04244 0.31 -0.8 4,523,523 + ECD_04244 0.35 +1.3 4,523,685 + ECD_04244 0.55 +0.1 4,523,685 + ECD_04244 0.55 +1.2 4,523,685 + ECD_04244 0.55 +0.1 4,523,686 - ECD_04244 0.55 +0.1 4,523,686 - ECD_04244 0.55 +0.7 4,523,686 - ECD_04244 0.55 -0.3 4,523,686 - ECD_04244 0.55 +0.1 4,523,743 + ECD_04244 0.62 +1.8 4,523,744 - ECD_04244 0.63 +0.0 4,523,744 - ECD_04244 0.63 +1.3 4,523,744 - ECD_04244 0.63 +0.3 4,523,744 - ECD_04244 0.63 -0.1 4,523,744 - ECD_04244 0.63 -0.0 4,523,744 - ECD_04244 0.63 +0.8 4,523,807 - ECD_04244 0.71 -0.4 4,523,810 + ECD_04244 0.71 -0.3 4,523,810 + ECD_04244 0.71 +0.7 4,523,810 + ECD_04244 0.71 -0.4 4,523,811 - ECD_04244 0.71 +0.0 4,523,811 - ECD_04244 0.71 -0.8 4,523,811 - ECD_04244 0.71 -0.4 4,523,811 - ECD_04244 0.71 -0.8 4,523,811 - ECD_04244 0.71 -0.1 4,523,821 + ECD_04244 0.72 -0.4 4,523,841 + ECD_04244 0.75 +0.1 4,523,841 + ECD_04244 0.75 +1.6 4,523,842 - ECD_04244 0.75 +0.1 4,523,882 + ECD_04244 0.80 +0.5 4,524,013 + +0.8 4,524,090 + +0.6 4,524,190 + -0.0 4,524,190 + +0.4 4,524,190 + +0.7 4,524,259 - ECD_04245 0.34 +0.2 4,524,301 - ECD_04245 0.51 -0.3 4,524,301 - ECD_04245 0.51 +0.7 4,524,341 + ECD_04245 0.68 -0.2 4,524,342 - ECD_04245 0.69 +0.2 4,524,342 - ECD_04245 0.69 +2.0 4,524,370 + ECD_04245 0.81 +0.6 4,524,371 - ECD_04245 0.81 +0.4 4,524,371 - ECD_04245 0.81 +0.2 4,524,445 - +0.8 4,524,445 - -0.3 4,524,552 - +0.4 4,524,620 - ECD_t00085 0.52 +0.3 4,524,620 - ECD_t00085 0.52 -0.1 4,524,620 - ECD_t00085 0.52 -0.3 4,524,676 - -0.2 4,524,805 - +0.1 4,524,846 + +0.5 4,524,846 + +0.2 4,524,850 + +0.7 4,524,850 + +0.3 4,524,851 - +0.4 4,524,869 - +0.1 4,524,914 + -0.5 4,524,914 + +0.2 4,524,957 + -0.7 4,524,966 + -1.8 4,524,967 - +0.6 4,525,001 + +1.1 4,525,045 + +0.5 4,525,045 + +0.1 4,525,046 - +0.4 4,525,081 + -0.0 4,525,193 + ECD_04246 0.14 +0.7 4,525,196 + ECD_04246 0.15 -0.3 4,525,197 - ECD_04246 0.15 +0.8 4,525,287 - ECD_04246 0.24 +0.7 4,525,378 - ECD_04246 0.32 +1.0
Or see this region's nucleotide sequence