Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04110 and ECD_04111 are separated by 205 nucleotides ECD_04111 and ECD_04112 are separated by 72 nucleotides ECD_04112 and ECD_04113 are separated by 12 nucleotides ECD_04113 and ECD_04114 are separated by 3 nucleotides
ECD_04110: ECD_04110 - magnesium transporter, at 4,379,267 to 4,381,963
_04110
ECD_04111: ECD_04111 - enamine/imine deaminase, reaction intermediate detoxification, at 4,382,169 to 4,382,555
_04111
ECD_04112: ECD_04112 - aspartate carbamoyltransferase, regulatory subunit, at 4,382,628 to 4,383,089
_04112
ECD_04113: ECD_04113 - aspartate carbamoyltransferase, catalytic subunit, at 4,383,102 to 4,384,037
_04113
ECD_04114: ECD_04114 - pyrBI operon leader peptide, at 4,384,041 to 4,384,175
_04114
Position (kb)
4382
4383
4384 Strain fitness (log2 ratio)
-1
0
1 at 4381.723 kb on + strand at 4381.724 kb on - strand at 4381.871 kb on + strand at 4381.872 kb on - strand at 4381.904 kb on + strand at 4381.904 kb on + strand at 4381.906 kb on + strand at 4381.906 kb on + strand at 4381.906 kb on + strand at 4381.914 kb on + strand at 4381.914 kb on + strand at 4381.914 kb on + strand at 4381.915 kb on - strand at 4381.937 kb on + strand at 4381.968 kb on + strand at 4382.093 kb on - strand at 4382.134 kb on + strand at 4382.171 kb on - strand at 4382.284 kb on + strand, within ECD_04111 at 4382.285 kb on - strand, within ECD_04111 at 4382.285 kb on - strand, within ECD_04111 at 4382.339 kb on + strand, within ECD_04111 at 4382.385 kb on + strand, within ECD_04111 at 4382.480 kb on + strand, within ECD_04111 at 4382.481 kb on - strand, within ECD_04111 at 4382.481 kb on - strand, within ECD_04111 at 4382.481 kb on - strand, within ECD_04111 at 4382.503 kb on - strand, within ECD_04111 at 4382.503 kb on - strand, within ECD_04111 at 4382.568 kb on - strand at 4382.598 kb on - strand at 4382.617 kb on - strand at 4382.648 kb on + strand at 4382.671 kb on + strand at 4382.671 kb on + strand at 4382.671 kb on + strand at 4382.747 kb on + strand, within ECD_04112 at 4382.825 kb on - strand, within ECD_04112 at 4382.825 kb on - strand, within ECD_04112 at 4382.840 kb on + strand, within ECD_04112 at 4382.861 kb on - strand, within ECD_04112 at 4382.861 kb on - strand, within ECD_04112 at 4382.877 kb on + strand, within ECD_04112 at 4382.878 kb on - strand, within ECD_04112 at 4382.878 kb on - strand, within ECD_04112 at 4382.946 kb on + strand, within ECD_04112 at 4383.008 kb on + strand, within ECD_04112 at 4383.029 kb on + strand, within ECD_04112 at 4383.040 kb on - strand, within ECD_04112 at 4383.040 kb on - strand, within ECD_04112 at 4383.053 kb on + strand at 4383.056 kb on + strand at 4383.057 kb on - strand at 4383.057 kb on - strand at 4383.181 kb on + strand at 4383.200 kb on + strand, within ECD_04113 at 4383.358 kb on + strand, within ECD_04113 at 4383.392 kb on + strand, within ECD_04113 at 4383.393 kb on - strand, within ECD_04113 at 4383.393 kb on - strand, within ECD_04113 at 4383.446 kb on - strand, within ECD_04113 at 4383.446 kb on - strand, within ECD_04113 at 4383.481 kb on + strand, within ECD_04113 at 4383.482 kb on - strand, within ECD_04113 at 4383.670 kb on - strand, within ECD_04113 at 4383.730 kb on - strand, within ECD_04113 at 4383.742 kb on + strand, within ECD_04113 at 4383.742 kb on + strand, within ECD_04113 at 4383.743 kb on - strand, within ECD_04113 at 4383.743 kb on - strand, within ECD_04113 at 4383.800 kb on + strand, within ECD_04113 at 4384.010 kb on + strand at 4384.010 kb on + strand at 4384.011 kb on - strand at 4384.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,381,723 + -0.6 4,381,724 - +1.6 4,381,871 + -0.0 4,381,872 - -1.0 4,381,904 + -0.5 4,381,904 + +0.6 4,381,906 + +0.9 4,381,906 + +0.4 4,381,906 + +0.1 4,381,914 + +0.0 4,381,914 + -0.7 4,381,914 + +0.3 4,381,915 - +0.2 4,381,937 + -0.2 4,381,968 + +0.7 4,382,093 - +0.3 4,382,134 + +0.3 4,382,171 - -0.0 4,382,284 + ECD_04111 0.30 +0.2 4,382,285 - ECD_04111 0.30 +0.6 4,382,285 - ECD_04111 0.30 -1.2 4,382,339 + ECD_04111 0.44 +0.3 4,382,385 + ECD_04111 0.56 +0.2 4,382,480 + ECD_04111 0.80 +0.2 4,382,481 - ECD_04111 0.81 +0.1 4,382,481 - ECD_04111 0.81 -0.1 4,382,481 - ECD_04111 0.81 -0.2 4,382,503 - ECD_04111 0.86 +0.3 4,382,503 - ECD_04111 0.86 +0.2 4,382,568 - +0.8 4,382,598 - +0.1 4,382,617 - -0.2 4,382,648 + +0.1 4,382,671 + +1.0 4,382,671 + -0.9 4,382,671 + +0.5 4,382,747 + ECD_04112 0.26 +0.2 4,382,825 - ECD_04112 0.43 +0.3 4,382,825 - ECD_04112 0.43 -0.1 4,382,840 + ECD_04112 0.46 +1.0 4,382,861 - ECD_04112 0.50 +0.6 4,382,861 - ECD_04112 0.50 +0.2 4,382,877 + ECD_04112 0.54 -0.3 4,382,878 - ECD_04112 0.54 +0.6 4,382,878 - ECD_04112 0.54 -0.8 4,382,946 + ECD_04112 0.69 +0.1 4,383,008 + ECD_04112 0.82 -0.6 4,383,029 + ECD_04112 0.87 +0.7 4,383,040 - ECD_04112 0.89 +0.2 4,383,040 - ECD_04112 0.89 +0.1 4,383,053 + +0.5 4,383,056 + +0.6 4,383,057 - -1.3 4,383,057 - +0.1 4,383,181 + +0.1 4,383,200 + ECD_04113 0.10 +0.8 4,383,358 + ECD_04113 0.27 +0.1 4,383,392 + ECD_04113 0.31 +0.0 4,383,393 - ECD_04113 0.31 +1.5 4,383,393 - ECD_04113 0.31 -1.1 4,383,446 - ECD_04113 0.37 +0.5 4,383,446 - ECD_04113 0.37 +0.1 4,383,481 + ECD_04113 0.40 +0.2 4,383,482 - ECD_04113 0.41 -0.5 4,383,670 - ECD_04113 0.61 -0.2 4,383,730 - ECD_04113 0.67 -1.1 4,383,742 + ECD_04113 0.68 +0.4 4,383,742 + ECD_04113 0.68 +0.6 4,383,743 - ECD_04113 0.68 +1.6 4,383,743 - ECD_04113 0.68 -0.2 4,383,800 + ECD_04113 0.75 +0.1 4,384,010 + -0.3 4,384,010 + +0.2 4,384,011 - +0.1 4,384,022 - -0.0
Or see this region's nucleotide sequence