Strain Fitness in Escherichia coli BL21 around ECD_04028

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04027 and ECD_04028 are separated by 218 nucleotidesECD_04028 and ECD_04029 are separated by 149 nucleotides ECD_04027: ECD_04027 - Elongation Factor P Lys34 lysyltransferase, at 4,289,719 to 4,290,696 _04027 ECD_04028: ECD_04028 - putative transporter, at 4,290,915 to 4,292,417 _04028 ECD_04029: ECD_04029 - mechanosensitive channel protein, miniconductance, at 4,292,567 to 4,295,890 _04029 Position (kb) 4290 4291 4292 4293Strain fitness (log2 ratio) -2 -1 0 1 2at 4290.828 kb on + strandat 4290.888 kb on - strandat 4290.956 kb on - strandat 4291.197 kb on + strand, within ECD_04028at 4291.197 kb on + strand, within ECD_04028at 4291.199 kb on + strand, within ECD_04028at 4291.217 kb on + strand, within ECD_04028at 4291.218 kb on - strand, within ECD_04028at 4291.257 kb on + strand, within ECD_04028at 4291.304 kb on + strand, within ECD_04028at 4291.760 kb on + strand, within ECD_04028at 4291.764 kb on + strand, within ECD_04028at 4291.764 kb on + strand, within ECD_04028at 4291.764 kb on + strand, within ECD_04028at 4291.764 kb on + strand, within ECD_04028at 4291.764 kb on + strand, within ECD_04028at 4291.764 kb on + strand, within ECD_04028at 4291.843 kb on + strand, within ECD_04028at 4291.844 kb on - strand, within ECD_04028at 4291.857 kb on - strand, within ECD_04028at 4292.000 kb on + strand, within ECD_04028at 4292.031 kb on - strand, within ECD_04028at 4292.115 kb on - strand, within ECD_04028at 4292.127 kb on + strand, within ECD_04028at 4292.127 kb on + strand, within ECD_04028at 4292.128 kb on - strand, within ECD_04028at 4292.207 kb on + strand, within ECD_04028at 4292.207 kb on + strand, within ECD_04028at 4292.207 kb on + strand, within ECD_04028at 4292.208 kb on - strand, within ECD_04028at 4292.239 kb on + strand, within ECD_04028at 4292.274 kb on - strandat 4292.373 kb on + strandat 4292.374 kb on - strandat 4292.374 kb on - strandat 4292.394 kb on - strandat 4292.394 kb on - strandat 4292.405 kb on - strandat 4292.405 kb on - strandat 4292.470 kb on + strandat 4292.470 kb on + strandat 4292.470 kb on + strandat 4292.470 kb on + strandat 4292.470 kb on + strandat 4292.470 kb on + strandat 4292.470 kb on + strandat 4292.471 kb on - strandat 4292.478 kb on - strandat 4292.486 kb on + strandat 4292.528 kb on + strandat 4292.529 kb on - strandat 4292.568 kb on + strandat 4292.735 kb on - strandat 4292.758 kb on - strandat 4292.758 kb on - strandat 4292.761 kb on + strandat 4292.968 kb on + strand, within ECD_04029at 4292.968 kb on + strand, within ECD_04029at 4292.990 kb on + strand, within ECD_04029at 4292.990 kb on + strand, within ECD_04029at 4292.991 kb on - strand, within ECD_04029at 4293.125 kb on - strand, within ECD_04029at 4293.209 kb on - strand, within ECD_04029at 4293.255 kb on + strand, within ECD_04029at 4293.367 kb on + strand, within ECD_04029at 4293.404 kb on - strand, within ECD_04029

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
4,290,828 + +0.3
4,290,888 - -0.3
4,290,956 - -0.5
4,291,197 + ECD_04028 0.19 +0.0
4,291,197 + ECD_04028 0.19 -0.3
4,291,199 + ECD_04028 0.19 -0.8
4,291,217 + ECD_04028 0.20 +0.1
4,291,218 - ECD_04028 0.20 -0.2
4,291,257 + ECD_04028 0.23 +0.7
4,291,304 + ECD_04028 0.26 -0.4
4,291,760 + ECD_04028 0.56 +0.2
4,291,764 + ECD_04028 0.56 +0.3
4,291,764 + ECD_04028 0.56 +0.4
4,291,764 + ECD_04028 0.56 -0.1
4,291,764 + ECD_04028 0.56 -0.5
4,291,764 + ECD_04028 0.56 -0.7
4,291,764 + ECD_04028 0.56 -0.9
4,291,843 + ECD_04028 0.62 -0.8
4,291,844 - ECD_04028 0.62 +0.6
4,291,857 - ECD_04028 0.63 +0.1
4,292,000 + ECD_04028 0.72 +1.9
4,292,031 - ECD_04028 0.74 +0.0
4,292,115 - ECD_04028 0.80 -0.2
4,292,127 + ECD_04028 0.81 -0.4
4,292,127 + ECD_04028 0.81 -0.4
4,292,128 - ECD_04028 0.81 -1.2
4,292,207 + ECD_04028 0.86 -0.1
4,292,207 + ECD_04028 0.86 -0.4
4,292,207 + ECD_04028 0.86 -1.9
4,292,208 - ECD_04028 0.86 -1.2
4,292,239 + ECD_04028 0.88 -2.1
4,292,274 - +0.4
4,292,373 + -0.3
4,292,374 - -0.1
4,292,374 - +0.3
4,292,394 - -0.8
4,292,394 - -0.7
4,292,405 - +0.7
4,292,405 - +0.9
4,292,470 + -0.6
4,292,470 + -0.8
4,292,470 + +0.0
4,292,470 + +0.5
4,292,470 + -0.5
4,292,470 + -0.9
4,292,470 + -0.5
4,292,471 - -0.1
4,292,478 - -0.9
4,292,486 + +0.8
4,292,528 + +0.2
4,292,529 - -0.7
4,292,568 + +1.0
4,292,735 - +0.7
4,292,758 - -0.4
4,292,758 - -0.9
4,292,761 + +0.2
4,292,968 + ECD_04029 0.12 -0.6
4,292,968 + ECD_04029 0.12 -0.9
4,292,990 + ECD_04029 0.13 -0.3
4,292,990 + ECD_04029 0.13 -1.0
4,292,991 - ECD_04029 0.13 -0.0
4,293,125 - ECD_04029 0.17 -0.4
4,293,209 - ECD_04029 0.19 +1.2
4,293,255 + ECD_04029 0.21 -0.2
4,293,367 + ECD_04029 0.24 +0.9
4,293,404 - ECD_04029 0.25 +0.1

Or see this region's nucleotide sequence