Strain Fitness in Escherichia coli BL21 around ECD_03941

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03939 and ECD_03940 overlap by 4 nucleotidesECD_03940 and ECD_03941 are separated by 200 nucleotidesECD_03941 and ECD_03942 are separated by 392 nucleotides ECD_03939: ECD_03939 - acetate transporter, at 4,190,664 to 4,192,313 _03939 ECD_03940: ECD_03940 - DUF485 family inner membrane protein, at 4,192,310 to 4,192,624 _03940 ECD_03941: ECD_03941 - acetyl-CoA synthetase, at 4,192,825 to 4,194,783 _03941 ECD_03942: ECD_03942 - nitrite reductase, formate-dependent, cytochrome, at 4,195,176 to 4,196,612 _03942 Position (kb) 4192 4193 4194 4195Strain fitness (log2 ratio) -1 0 1 2at 4191.827 kb on + strand, within ECD_03939at 4191.833 kb on - strand, within ECD_03939at 4191.906 kb on + strand, within ECD_03939at 4191.907 kb on - strand, within ECD_03939at 4191.922 kb on + strand, within ECD_03939at 4192.003 kb on - strand, within ECD_03939at 4192.013 kb on - strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.124 kb on - strand, within ECD_03939at 4192.124 kb on - strand, within ECD_03939at 4192.124 kb on - strand, within ECD_03939at 4192.126 kb on + strand, within ECD_03939at 4192.202 kb on + strandat 4192.203 kb on - strandat 4192.203 kb on - strandat 4192.322 kb on + strandat 4192.342 kb on + strand, within ECD_03940at 4192.380 kb on + strand, within ECD_03940at 4192.380 kb on + strand, within ECD_03940at 4192.380 kb on + strand, within ECD_03940at 4192.381 kb on - strand, within ECD_03940at 4192.500 kb on - strand, within ECD_03940at 4192.516 kb on - strand, within ECD_03940at 4192.528 kb on + strand, within ECD_03940at 4192.571 kb on + strand, within ECD_03940at 4192.642 kb on + strandat 4192.642 kb on + strandat 4192.643 kb on - strandat 4192.733 kb on + strandat 4192.733 kb on + strandat 4192.733 kb on + strandat 4192.734 kb on - strandat 4192.788 kb on + strandat 4192.788 kb on + strandat 4192.944 kb on + strandat 4193.057 kb on + strand, within ECD_03941at 4193.089 kb on - strand, within ECD_03941at 4193.105 kb on + strand, within ECD_03941at 4193.106 kb on - strand, within ECD_03941at 4193.106 kb on - strand, within ECD_03941at 4193.124 kb on + strand, within ECD_03941at 4193.136 kb on + strand, within ECD_03941at 4193.136 kb on + strand, within ECD_03941at 4193.143 kb on + strand, within ECD_03941at 4193.143 kb on + strand, within ECD_03941at 4193.255 kb on + strand, within ECD_03941at 4193.255 kb on + strand, within ECD_03941at 4193.259 kb on - strand, within ECD_03941at 4193.259 kb on - strand, within ECD_03941at 4193.302 kb on - strand, within ECD_03941at 4193.302 kb on - strand, within ECD_03941at 4193.321 kb on + strand, within ECD_03941at 4193.321 kb on + strand, within ECD_03941at 4193.359 kb on - strand, within ECD_03941at 4193.592 kb on - strand, within ECD_03941at 4193.721 kb on - strand, within ECD_03941at 4193.721 kb on - strand, within ECD_03941at 4193.727 kb on + strand, within ECD_03941at 4193.728 kb on - strand, within ECD_03941at 4193.840 kb on + strand, within ECD_03941at 4193.840 kb on + strand, within ECD_03941at 4193.841 kb on - strand, within ECD_03941at 4193.841 kb on - strand, within ECD_03941at 4193.882 kb on + strand, within ECD_03941at 4193.882 kb on + strand, within ECD_03941at 4193.883 kb on - strand, within ECD_03941at 4193.883 kb on - strand, within ECD_03941at 4193.887 kb on - strand, within ECD_03941at 4193.887 kb on - strand, within ECD_03941at 4193.912 kb on + strand, within ECD_03941at 4193.912 kb on + strand, within ECD_03941at 4193.913 kb on - strand, within ECD_03941at 4193.917 kb on - strand, within ECD_03941at 4193.955 kb on + strand, within ECD_03941at 4193.955 kb on + strand, within ECD_03941at 4193.956 kb on - strand, within ECD_03941at 4194.118 kb on - strand, within ECD_03941at 4194.142 kb on + strand, within ECD_03941at 4194.143 kb on - strand, within ECD_03941at 4194.143 kb on - strand, within ECD_03941at 4194.143 kb on - strand, within ECD_03941at 4194.199 kb on - strand, within ECD_03941at 4194.259 kb on - strand, within ECD_03941at 4194.371 kb on + strand, within ECD_03941at 4194.371 kb on + strand, within ECD_03941at 4194.371 kb on + strand, within ECD_03941at 4194.371 kb on + strand, within ECD_03941at 4194.372 kb on - strand, within ECD_03941at 4194.453 kb on + strand, within ECD_03941at 4194.455 kb on + strand, within ECD_03941at 4194.455 kb on + strand, within ECD_03941at 4194.455 kb on + strand, within ECD_03941at 4194.456 kb on - strand, within ECD_03941at 4194.456 kb on - strand, within ECD_03941at 4194.462 kb on + strand, within ECD_03941at 4194.462 kb on + strand, within ECD_03941at 4194.463 kb on - strand, within ECD_03941at 4194.463 kb on - strand, within ECD_03941at 4194.463 kb on - strand, within ECD_03941at 4194.576 kb on - strand, within ECD_03941at 4194.583 kb on - strand, within ECD_03941at 4194.595 kb on - strandat 4194.676 kb on - strandat 4194.676 kb on - strandat 4194.683 kb on - strandat 4194.683 kb on - strandat 4194.688 kb on - strandat 4194.701 kb on + strandat 4194.702 kb on - strandat 4194.713 kb on + strandat 4194.713 kb on + strandat 4194.812 kb on - strandat 4194.815 kb on - strandat 4194.815 kb on - strandat 4194.823 kb on + strandat 4194.858 kb on + strandat 4195.001 kb on + strandat 4195.071 kb on + strandat 4195.071 kb on + strandat 4195.071 kb on + strandat 4195.077 kb on + strandat 4195.077 kb on + strandat 4195.077 kb on + strandat 4195.078 kb on - strandat 4195.103 kb on + strandat 4195.103 kb on + strandat 4195.103 kb on + strandat 4195.103 kb on + strandat 4195.333 kb on - strand, within ECD_03942at 4195.333 kb on - strand, within ECD_03942at 4195.437 kb on + strand, within ECD_03942at 4195.550 kb on + strand, within ECD_03942at 4195.551 kb on - strand, within ECD_03942at 4195.599 kb on + strand, within ECD_03942at 4195.599 kb on + strand, within ECD_03942at 4195.599 kb on + strand, within ECD_03942at 4195.600 kb on - strand, within ECD_03942at 4195.611 kb on - strand, within ECD_03942at 4195.648 kb on + strand, within ECD_03942at 4195.648 kb on + strand, within ECD_03942at 4195.648 kb on + strand, within ECD_03942at 4195.648 kb on + strand, within ECD_03942at 4195.648 kb on + strand, within ECD_03942at 4195.649 kb on - strand, within ECD_03942at 4195.709 kb on - strand, within ECD_03942at 4195.726 kb on - strand, within ECD_03942

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
4,191,827 + ECD_03939 0.70 -0.6
4,191,833 - ECD_03939 0.71 -1.0
4,191,906 + ECD_03939 0.75 -0.0
4,191,907 - ECD_03939 0.75 -0.1
4,191,922 + ECD_03939 0.76 -0.8
4,192,003 - ECD_03939 0.81 -0.6
4,192,013 - ECD_03939 0.82 -0.4
4,192,066 + ECD_03939 0.85 +1.9
4,192,066 + ECD_03939 0.85 -0.4
4,192,066 + ECD_03939 0.85 +0.1
4,192,066 + ECD_03939 0.85 -0.1
4,192,066 + ECD_03939 0.85 -0.7
4,192,066 + ECD_03939 0.85 -0.2
4,192,067 - ECD_03939 0.85 -0.1
4,192,067 - ECD_03939 0.85 -0.3
4,192,067 - ECD_03939 0.85 -0.1
4,192,067 - ECD_03939 0.85 +0.7
4,192,124 - ECD_03939 0.88 +0.5
4,192,124 - ECD_03939 0.88 -0.0
4,192,124 - ECD_03939 0.88 -0.4
4,192,126 + ECD_03939 0.89 +0.8
4,192,202 + -1.1
4,192,203 - +0.7
4,192,203 - +0.0
4,192,322 + +0.4
4,192,342 + ECD_03940 0.10 +0.1
4,192,380 + ECD_03940 0.22 +0.4
4,192,380 + ECD_03940 0.22 -0.1
4,192,380 + ECD_03940 0.22 +0.1
4,192,381 - ECD_03940 0.23 -0.0
4,192,500 - ECD_03940 0.60 +1.0
4,192,516 - ECD_03940 0.65 -0.2
4,192,528 + ECD_03940 0.69 +0.4
4,192,571 + ECD_03940 0.83 +1.0
4,192,642 + +0.1
4,192,642 + +0.4
4,192,643 - -0.3
4,192,733 + +0.1
4,192,733 + +0.5
4,192,733 + -0.1
4,192,734 - -0.4
4,192,788 + +0.6
4,192,788 + -0.3
4,192,944 + -0.1
4,193,057 + ECD_03941 0.12 -0.0
4,193,089 - ECD_03941 0.13 +0.1
4,193,105 + ECD_03941 0.14 -0.2
4,193,106 - ECD_03941 0.14 -0.2
4,193,106 - ECD_03941 0.14 +0.1
4,193,124 + ECD_03941 0.15 -0.6
4,193,136 + ECD_03941 0.16 +0.3
4,193,136 + ECD_03941 0.16 +0.2
4,193,143 + ECD_03941 0.16 +0.7
4,193,143 + ECD_03941 0.16 -0.7
4,193,255 + ECD_03941 0.22 -0.5
4,193,255 + ECD_03941 0.22 -0.5
4,193,259 - ECD_03941 0.22 +0.7
4,193,259 - ECD_03941 0.22 +0.8
4,193,302 - ECD_03941 0.24 -0.5
4,193,302 - ECD_03941 0.24 -0.3
4,193,321 + ECD_03941 0.25 +0.0
4,193,321 + ECD_03941 0.25 -0.3
4,193,359 - ECD_03941 0.27 -0.5
4,193,592 - ECD_03941 0.39 +0.0
4,193,721 - ECD_03941 0.46 +0.2
4,193,721 - ECD_03941 0.46 -0.0
4,193,727 + ECD_03941 0.46 +1.9
4,193,728 - ECD_03941 0.46 +0.2
4,193,840 + ECD_03941 0.52 +0.0
4,193,840 + ECD_03941 0.52 -0.5
4,193,841 - ECD_03941 0.52 -0.4
4,193,841 - ECD_03941 0.52 +0.1
4,193,882 + ECD_03941 0.54 -0.4
4,193,882 + ECD_03941 0.54 +0.2
4,193,883 - ECD_03941 0.54 +0.2
4,193,883 - ECD_03941 0.54 +0.0
4,193,887 - ECD_03941 0.54 -0.3
4,193,887 - ECD_03941 0.54 +0.6
4,193,912 + ECD_03941 0.55 -0.7
4,193,912 + ECD_03941 0.55 +0.0
4,193,913 - ECD_03941 0.56 +0.6
4,193,917 - ECD_03941 0.56 -0.2
4,193,955 + ECD_03941 0.58 -1.7
4,193,955 + ECD_03941 0.58 -0.8
4,193,956 - ECD_03941 0.58 +0.9
4,194,118 - ECD_03941 0.66 +0.0
4,194,142 + ECD_03941 0.67 +0.0
4,194,143 - ECD_03941 0.67 +0.6
4,194,143 - ECD_03941 0.67 +0.5
4,194,143 - ECD_03941 0.67 -0.6
4,194,199 - ECD_03941 0.70 -1.4
4,194,259 - ECD_03941 0.73 +0.2
4,194,371 + ECD_03941 0.79 +0.1
4,194,371 + ECD_03941 0.79 -0.3
4,194,371 + ECD_03941 0.79 +0.1
4,194,371 + ECD_03941 0.79 +0.0
4,194,372 - ECD_03941 0.79 -1.2
4,194,453 + ECD_03941 0.83 -0.6
4,194,455 + ECD_03941 0.83 +0.1
4,194,455 + ECD_03941 0.83 -0.2
4,194,455 + ECD_03941 0.83 -0.5
4,194,456 - ECD_03941 0.83 -0.0
4,194,456 - ECD_03941 0.83 +0.7
4,194,462 + ECD_03941 0.84 +0.3
4,194,462 + ECD_03941 0.84 -1.1
4,194,463 - ECD_03941 0.84 +0.2
4,194,463 - ECD_03941 0.84 -0.3
4,194,463 - ECD_03941 0.84 +0.1
4,194,576 - ECD_03941 0.89 -0.1
4,194,583 - ECD_03941 0.90 -0.0
4,194,595 - +0.2
4,194,676 - -0.1
4,194,676 - +0.3
4,194,683 - -0.7
4,194,683 - -1.3
4,194,688 - +0.2
4,194,701 + -0.0
4,194,702 - -0.3
4,194,713 + +0.4
4,194,713 + -0.4
4,194,812 - +0.1
4,194,815 - -0.7
4,194,815 - -0.8
4,194,823 + +1.0
4,194,858 + +0.3
4,195,001 + -0.6
4,195,071 + -0.1
4,195,071 + -0.0
4,195,071 + +0.1
4,195,077 + +0.0
4,195,077 + +0.7
4,195,077 + -0.0
4,195,078 - +0.5
4,195,103 + +0.2
4,195,103 + +0.7
4,195,103 + -0.9
4,195,103 + +0.2
4,195,333 - ECD_03942 0.11 -0.3
4,195,333 - ECD_03942 0.11 -0.5
4,195,437 + ECD_03942 0.18 +0.5
4,195,550 + ECD_03942 0.26 +0.1
4,195,551 - ECD_03942 0.26 +1.3
4,195,599 + ECD_03942 0.29 +0.5
4,195,599 + ECD_03942 0.29 +0.0
4,195,599 + ECD_03942 0.29 -0.5
4,195,600 - ECD_03942 0.30 +0.2
4,195,611 - ECD_03942 0.30 +0.1
4,195,648 + ECD_03942 0.33 +0.1
4,195,648 + ECD_03942 0.33 -0.0
4,195,648 + ECD_03942 0.33 -0.5
4,195,648 + ECD_03942 0.33 -1.0
4,195,648 + ECD_03942 0.33 -0.5
4,195,649 - ECD_03942 0.33 -0.4
4,195,709 - ECD_03942 0.37 -0.1
4,195,726 - ECD_03942 0.38 +0.2

Or see this region's nucleotide sequence