Strain Fitness in Escherichia coli BL21 around ECD_03871

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03869 and ECD_03870 overlap by 8 nucleotidesECD_03870 and ECD_03871 overlap by 1 nucleotidesECD_03871 and ECD_03872 are separated by 233 nucleotidesECD_03872 and ECD_03873 are separated by 94 nucleotides ECD_03869: ECD_03869 - adenylyltransferase, modifies ThiS C-terminus, at 4,100,872 to 4,101,627 _03869 ECD_03870: ECD_03870 - thiamine phosphate synthase (thiamine phosphate pyrophosphorylase), at 4,101,620 to 4,102,255 _03870 ECD_03871: ECD_03871 - phosphomethylpyrimidine synthase, at 4,102,255 to 4,104,150 _03871 ECD_03872: ECD_03872 - stationary phase protein, binds sigma 70 RNA polymerase subunit, at 4,104,384 to 4,104,860 _03872 ECD_03873: ECD_03873 - NADH pyrophosphatase, at 4,104,955 to 4,105,728 _03873 Position (kb) 4102 4103 4104 4105Strain fitness (log2 ratio) -2 -1 0 1at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.491 kb on + strand, within ECD_03869at 4101.507 kb on + strand, within ECD_03869at 4101.600 kb on + strandat 4101.600 kb on + strandat 4101.610 kb on - strandat 4101.709 kb on + strand, within ECD_03870at 4101.881 kb on - strand, within ECD_03870at 4101.881 kb on - strand, within ECD_03870at 4101.881 kb on - strand, within ECD_03870at 4101.882 kb on + strand, within ECD_03870at 4101.882 kb on + strand, within ECD_03870at 4101.882 kb on + strand, within ECD_03870at 4101.882 kb on + strand, within ECD_03870at 4101.883 kb on - strand, within ECD_03870at 4101.883 kb on - strand, within ECD_03870at 4101.883 kb on - strand, within ECD_03870at 4101.883 kb on - strand, within ECD_03870at 4102.015 kb on - strand, within ECD_03870at 4102.072 kb on - strand, within ECD_03870at 4102.072 kb on - strand, within ECD_03870at 4102.072 kb on - strand, within ECD_03870at 4102.142 kb on + strand, within ECD_03870at 4102.142 kb on + strand, within ECD_03870at 4102.142 kb on + strand, within ECD_03870at 4102.143 kb on - strand, within ECD_03870at 4102.153 kb on + strand, within ECD_03870at 4102.154 kb on - strand, within ECD_03870at 4102.157 kb on + strand, within ECD_03870at 4102.157 kb on + strand, within ECD_03870at 4102.158 kb on - strand, within ECD_03870at 4102.158 kb on - strand, within ECD_03870at 4102.190 kb on + strand, within ECD_03870at 4102.191 kb on - strand, within ECD_03870at 4102.191 kb on - strand, within ECD_03870at 4102.191 kb on - strand, within ECD_03870at 4102.191 kb on - strand, within ECD_03870at 4102.229 kb on + strandat 4102.251 kb on + strandat 4102.251 kb on + strandat 4102.251 kb on + strandat 4102.252 kb on - strandat 4102.252 kb on - strandat 4102.315 kb on - strandat 4102.335 kb on + strandat 4102.457 kb on + strand, within ECD_03871at 4102.457 kb on + strand, within ECD_03871at 4102.599 kb on + strand, within ECD_03871at 4102.599 kb on + strand, within ECD_03871at 4102.601 kb on + strand, within ECD_03871at 4102.601 kb on + strand, within ECD_03871at 4102.601 kb on + strand, within ECD_03871at 4102.602 kb on - strand, within ECD_03871at 4102.602 kb on - strand, within ECD_03871at 4102.602 kb on - strand, within ECD_03871at 4102.608 kb on + strand, within ECD_03871at 4102.621 kb on - strand, within ECD_03871at 4102.664 kb on - strand, within ECD_03871at 4102.667 kb on + strand, within ECD_03871at 4102.667 kb on + strand, within ECD_03871at 4102.668 kb on - strand, within ECD_03871at 4102.668 kb on - strand, within ECD_03871at 4102.753 kb on - strand, within ECD_03871at 4102.813 kb on - strand, within ECD_03871at 4102.950 kb on + strand, within ECD_03871at 4102.994 kb on + strand, within ECD_03871at 4103.165 kb on + strand, within ECD_03871at 4103.166 kb on - strand, within ECD_03871at 4103.166 kb on - strand, within ECD_03871at 4103.221 kb on - strand, within ECD_03871at 4103.274 kb on + strand, within ECD_03871at 4103.275 kb on - strand, within ECD_03871at 4103.326 kb on - strand, within ECD_03871at 4103.326 kb on - strand, within ECD_03871at 4103.328 kb on - strand, within ECD_03871at 4103.381 kb on - strand, within ECD_03871at 4103.461 kb on - strand, within ECD_03871at 4103.461 kb on - strand, within ECD_03871at 4103.469 kb on + strand, within ECD_03871at 4103.560 kb on - strand, within ECD_03871at 4103.746 kb on + strand, within ECD_03871at 4103.746 kb on + strand, within ECD_03871at 4103.797 kb on - strand, within ECD_03871at 4103.801 kb on + strand, within ECD_03871at 4103.802 kb on - strand, within ECD_03871at 4103.863 kb on + strand, within ECD_03871at 4103.864 kb on - strand, within ECD_03871at 4103.864 kb on - strand, within ECD_03871at 4103.864 kb on - strand, within ECD_03871at 4103.987 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.051 kb on - strandat 4104.097 kb on - strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.151 kb on - strandat 4104.168 kb on + strandat 4104.239 kb on - strandat 4104.239 kb on - strandat 4104.261 kb on - strandat 4104.261 kb on - strandat 4104.261 kb on - strandat 4104.293 kb on - strandat 4104.358 kb on + strandat 4104.358 kb on + strandat 4104.371 kb on - strandat 4104.435 kb on - strand, within ECD_03872at 4104.506 kb on + strand, within ECD_03872at 4104.541 kb on + strand, within ECD_03872at 4104.551 kb on + strand, within ECD_03872at 4104.647 kb on + strand, within ECD_03872at 4104.648 kb on - strand, within ECD_03872at 4104.670 kb on + strand, within ECD_03872at 4104.671 kb on - strand, within ECD_03872at 4104.725 kb on - strand, within ECD_03872at 4104.725 kb on - strand, within ECD_03872at 4104.760 kb on + strand, within ECD_03872at 4104.760 kb on + strand, within ECD_03872at 4104.761 kb on - strand, within ECD_03872at 4104.761 kb on - strand, within ECD_03872at 4104.763 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.782 kb on + strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.783 kb on - strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.786 kb on + strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.787 kb on - strand, within ECD_03872at 4104.792 kb on + strand, within ECD_03872at 4104.815 kb on + strandat 4104.816 kb on - strandat 4104.855 kb on - strandat 4104.942 kb on + strandat 4104.942 kb on + strandat 4104.943 kb on - strandat 4104.954 kb on + strandat 4104.954 kb on + strandat 4104.955 kb on - strandat 4104.955 kb on - strandat 4105.122 kb on - strand, within ECD_03873at 4105.124 kb on + strand, within ECD_03873at 4105.124 kb on + strand, within ECD_03873at 4105.125 kb on - strand, within ECD_03873at 4105.125 kb on - strand, within ECD_03873

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,101,319 + ECD_03869 0.59 +0.5
4,101,319 + ECD_03869 0.59 +0.1
4,101,319 + ECD_03869 0.59 +0.8
4,101,319 + ECD_03869 0.59 +0.5
4,101,319 + ECD_03869 0.59 -0.4
4,101,319 + ECD_03869 0.59 -0.2
4,101,320 - ECD_03869 0.59 -0.0
4,101,320 - ECD_03869 0.59 +0.1
4,101,320 - ECD_03869 0.59 -0.1
4,101,320 - ECD_03869 0.59 -1.5
4,101,320 - ECD_03869 0.59 +0.7
4,101,491 + ECD_03869 0.82 +0.8
4,101,507 + ECD_03869 0.84 -0.6
4,101,600 + +0.7
4,101,600 + +0.4
4,101,610 - +0.1
4,101,709 + ECD_03870 0.14 +0.0
4,101,881 - ECD_03870 0.41 +0.1
4,101,881 - ECD_03870 0.41 +0.9
4,101,881 - ECD_03870 0.41 +0.1
4,101,882 + ECD_03870 0.41 -0.3
4,101,882 + ECD_03870 0.41 -0.4
4,101,882 + ECD_03870 0.41 +0.8
4,101,882 + ECD_03870 0.41 +0.3
4,101,883 - ECD_03870 0.41 +0.4
4,101,883 - ECD_03870 0.41 +0.1
4,101,883 - ECD_03870 0.41 +0.4
4,101,883 - ECD_03870 0.41 +0.1
4,102,015 - ECD_03870 0.62 -0.7
4,102,072 - ECD_03870 0.71 +0.1
4,102,072 - ECD_03870 0.71 +0.3
4,102,072 - ECD_03870 0.71 +0.1
4,102,142 + ECD_03870 0.82 +0.3
4,102,142 + ECD_03870 0.82 +0.2
4,102,142 + ECD_03870 0.82 -0.1
4,102,143 - ECD_03870 0.82 -0.3
4,102,153 + ECD_03870 0.84 +0.0
4,102,154 - ECD_03870 0.84 -1.8
4,102,157 + ECD_03870 0.84 +1.1
4,102,157 + ECD_03870 0.84 +0.1
4,102,158 - ECD_03870 0.85 -0.8
4,102,158 - ECD_03870 0.85 +0.9
4,102,190 + ECD_03870 0.90 -1.0
4,102,191 - ECD_03870 0.90 -1.2
4,102,191 - ECD_03870 0.90 -0.3
4,102,191 - ECD_03870 0.90 -0.1
4,102,191 - ECD_03870 0.90 -0.1
4,102,229 + +1.1
4,102,251 + -0.7
4,102,251 + -0.7
4,102,251 + +0.2
4,102,252 - +0.0
4,102,252 - -0.6
4,102,315 - -0.3
4,102,335 + +0.2
4,102,457 + ECD_03871 0.11 -0.3
4,102,457 + ECD_03871 0.11 -0.1
4,102,599 + ECD_03871 0.18 -0.8
4,102,599 + ECD_03871 0.18 -0.8
4,102,601 + ECD_03871 0.18 -1.6
4,102,601 + ECD_03871 0.18 +0.2
4,102,601 + ECD_03871 0.18 -0.3
4,102,602 - ECD_03871 0.18 +0.3
4,102,602 - ECD_03871 0.18 +0.2
4,102,602 - ECD_03871 0.18 -1.2
4,102,608 + ECD_03871 0.19 -0.3
4,102,621 - ECD_03871 0.19 -0.7
4,102,664 - ECD_03871 0.22 +0.1
4,102,667 + ECD_03871 0.22 -0.3
4,102,667 + ECD_03871 0.22 +0.3
4,102,668 - ECD_03871 0.22 +0.8
4,102,668 - ECD_03871 0.22 -0.2
4,102,753 - ECD_03871 0.26 -0.5
4,102,813 - ECD_03871 0.29 -0.5
4,102,950 + ECD_03871 0.37 +0.1
4,102,994 + ECD_03871 0.39 +0.1
4,103,165 + ECD_03871 0.48 +0.0
4,103,166 - ECD_03871 0.48 +0.9
4,103,166 - ECD_03871 0.48 +0.1
4,103,221 - ECD_03871 0.51 +1.1
4,103,274 + ECD_03871 0.54 +0.7
4,103,275 - ECD_03871 0.54 +0.0
4,103,326 - ECD_03871 0.56 -0.6
4,103,326 - ECD_03871 0.56 +1.5
4,103,328 - ECD_03871 0.57 -0.1
4,103,381 - ECD_03871 0.59 -0.4
4,103,461 - ECD_03871 0.64 +0.7
4,103,461 - ECD_03871 0.64 +0.6
4,103,469 + ECD_03871 0.64 -0.1
4,103,560 - ECD_03871 0.69 -0.1
4,103,746 + ECD_03871 0.79 +1.1
4,103,746 + ECD_03871 0.79 +0.4
4,103,797 - ECD_03871 0.81 +0.1
4,103,801 + ECD_03871 0.82 -2.6
4,103,802 - ECD_03871 0.82 -0.2
4,103,863 + ECD_03871 0.85 -1.5
4,103,864 - ECD_03871 0.85 -0.0
4,103,864 - ECD_03871 0.85 +0.1
4,103,864 - ECD_03871 0.85 +0.0
4,103,987 - -1.0
4,104,051 - -1.5
4,104,051 - -0.0
4,104,051 - +0.1
4,104,051 - -0.3
4,104,051 - +0.3
4,104,097 - -0.4
4,104,150 + -0.6
4,104,150 + +0.2
4,104,150 + -0.1
4,104,150 + -0.2
4,104,150 + +0.9
4,104,150 + -1.2
4,104,151 - -0.5
4,104,151 - +0.6
4,104,151 - -0.4
4,104,151 - -0.3
4,104,151 - -0.0
4,104,151 - +0.9
4,104,168 + -0.8
4,104,239 - -0.5
4,104,239 - -0.3
4,104,261 - +1.2
4,104,261 - +0.5
4,104,261 - +1.0
4,104,293 - +0.7
4,104,358 + +0.5
4,104,358 + +0.7
4,104,371 - -0.3
4,104,435 - ECD_03872 0.11 +0.0
4,104,506 + ECD_03872 0.26 +0.3
4,104,541 + ECD_03872 0.33 -0.1
4,104,551 + ECD_03872 0.35 +0.1
4,104,647 + ECD_03872 0.55 +1.2
4,104,648 - ECD_03872 0.55 -0.2
4,104,670 + ECD_03872 0.60 -0.1
4,104,671 - ECD_03872 0.60 -0.2
4,104,725 - ECD_03872 0.71 -0.3
4,104,725 - ECD_03872 0.71 +0.1
4,104,760 + ECD_03872 0.79 -0.4
4,104,760 + ECD_03872 0.79 +0.5
4,104,761 - ECD_03872 0.79 +0.5
4,104,761 - ECD_03872 0.79 +0.7
4,104,763 + ECD_03872 0.79 +0.6
4,104,782 + ECD_03872 0.83 -0.7
4,104,782 + ECD_03872 0.83 +0.5
4,104,782 + ECD_03872 0.83 -0.1
4,104,782 + ECD_03872 0.83 -0.2
4,104,782 + ECD_03872 0.83 +0.2
4,104,783 - ECD_03872 0.84 -0.1
4,104,783 - ECD_03872 0.84 -0.8
4,104,783 - ECD_03872 0.84 +0.4
4,104,783 - ECD_03872 0.84 -0.2
4,104,786 + ECD_03872 0.84 +0.2
4,104,786 + ECD_03872 0.84 +0.4
4,104,786 + ECD_03872 0.84 +0.2
4,104,786 + ECD_03872 0.84 +0.7
4,104,786 + ECD_03872 0.84 -0.6
4,104,786 + ECD_03872 0.84 +1.4
4,104,786 + ECD_03872 0.84 -0.4
4,104,786 + ECD_03872 0.84 -1.0
4,104,786 + ECD_03872 0.84 +0.0
4,104,786 + ECD_03872 0.84 +0.1
4,104,787 - ECD_03872 0.84 +0.3
4,104,787 - ECD_03872 0.84 -0.0
4,104,787 - ECD_03872 0.84 -0.2
4,104,787 - ECD_03872 0.84 +0.3
4,104,787 - ECD_03872 0.84 +0.8
4,104,787 - ECD_03872 0.84 +0.3
4,104,787 - ECD_03872 0.84 +0.2
4,104,787 - ECD_03872 0.84 -0.5
4,104,787 - ECD_03872 0.84 +0.3
4,104,787 - ECD_03872 0.84 +0.2
4,104,787 - ECD_03872 0.84 +0.1
4,104,787 - ECD_03872 0.84 +0.2
4,104,787 - ECD_03872 0.84 -1.2
4,104,792 + ECD_03872 0.86 +0.3
4,104,815 + +0.1
4,104,816 - -0.6
4,104,855 - -0.6
4,104,942 + -0.2
4,104,942 + -0.6
4,104,943 - -0.8
4,104,954 + +0.5
4,104,954 + +1.0
4,104,955 - -1.0
4,104,955 - -0.9
4,105,122 - ECD_03873 0.22 +0.3
4,105,124 + ECD_03873 0.22 +0.3
4,105,124 + ECD_03873 0.22 -0.1
4,105,125 - ECD_03873 0.22 +0.1
4,105,125 - ECD_03873 0.22 +0.1

Or see this region's nucleotide sequence