Strain Fitness in Escherichia coli BL21 around ECD_03710

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03709 and ECD_03710 are separated by 77 nucleotidesECD_03710 and ECD_03711 are separated by 25 nucleotidesECD_03711 and ECD_03712 are separated by 52 nucleotides ECD_03709: ECD_03709 - hypothetical protein, at 3,908,275 to 3,909,171 _03709 ECD_03710: ECD_03710 - putative permease, at 3,909,249 to 3,910,472 _03710 ECD_03711: ECD_03711 - hypothetical protein, at 3,910,498 to 3,910,851 _03711 ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944 _03712 Position (kb) 3909 3910 3911Strain fitness (log2 ratio) -2 -1 0 1at 3908.252 kb on + strandat 3908.252 kb on + strandat 3908.252 kb on + strandat 3908.252 kb on + strandat 3908.252 kb on + strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.253 kb on - strandat 3908.262 kb on - strandat 3908.290 kb on + strandat 3908.309 kb on + strandat 3908.310 kb on - strandat 3908.310 kb on - strandat 3908.314 kb on + strandat 3908.341 kb on - strandat 3908.365 kb on + strand, within ECD_03709at 3908.383 kb on - strand, within ECD_03709at 3908.383 kb on - strand, within ECD_03709at 3908.403 kb on + strand, within ECD_03709at 3908.403 kb on + strand, within ECD_03709at 3908.412 kb on + strand, within ECD_03709at 3908.412 kb on + strand, within ECD_03709at 3908.413 kb on - strand, within ECD_03709at 3908.452 kb on - strand, within ECD_03709at 3908.452 kb on - strand, within ECD_03709at 3908.454 kb on - strand, within ECD_03709at 3908.476 kb on + strand, within ECD_03709at 3908.476 kb on + strand, within ECD_03709at 3908.476 kb on + strand, within ECD_03709at 3908.476 kb on + strand, within ECD_03709at 3908.477 kb on - strand, within ECD_03709at 3908.477 kb on - strand, within ECD_03709at 3908.479 kb on + strand, within ECD_03709at 3908.560 kb on - strand, within ECD_03709at 3908.560 kb on - strand, within ECD_03709at 3908.732 kb on + strand, within ECD_03709at 3908.733 kb on - strand, within ECD_03709at 3908.733 kb on - strand, within ECD_03709at 3908.756 kb on + strand, within ECD_03709at 3908.757 kb on - strand, within ECD_03709at 3908.780 kb on + strand, within ECD_03709at 3908.780 kb on + strand, within ECD_03709at 3908.780 kb on + strand, within ECD_03709at 3908.781 kb on - strand, within ECD_03709at 3908.781 kb on - strand, within ECD_03709at 3908.781 kb on - strand, within ECD_03709at 3908.781 kb on - strand, within ECD_03709at 3908.781 kb on - strand, within ECD_03709at 3908.782 kb on + strand, within ECD_03709at 3908.782 kb on + strand, within ECD_03709at 3908.783 kb on - strand, within ECD_03709at 3908.783 kb on - strand, within ECD_03709at 3908.794 kb on + strand, within ECD_03709at 3908.866 kb on - strand, within ECD_03709at 3908.869 kb on - strand, within ECD_03709at 3908.901 kb on + strand, within ECD_03709at 3908.964 kb on + strand, within ECD_03709at 3908.978 kb on + strand, within ECD_03709at 3908.978 kb on + strand, within ECD_03709at 3908.978 kb on + strand, within ECD_03709at 3908.979 kb on - strand, within ECD_03709at 3908.979 kb on - strand, within ECD_03709at 3908.979 kb on - strand, within ECD_03709at 3908.979 kb on - strand, within ECD_03709at 3909.004 kb on - strand, within ECD_03709at 3909.004 kb on - strand, within ECD_03709at 3909.005 kb on + strand, within ECD_03709at 3909.005 kb on + strand, within ECD_03709at 3909.005 kb on + strand, within ECD_03709at 3909.005 kb on + strand, within ECD_03709at 3909.005 kb on + strand, within ECD_03709at 3909.005 kb on + strand, within ECD_03709at 3909.006 kb on - strand, within ECD_03709at 3909.006 kb on - strand, within ECD_03709at 3909.065 kb on + strand, within ECD_03709at 3909.066 kb on - strand, within ECD_03709at 3909.066 kb on - strand, within ECD_03709at 3909.087 kb on + strandat 3909.088 kb on - strandat 3909.088 kb on - strandat 3909.088 kb on - strandat 3909.091 kb on + strandat 3909.092 kb on - strandat 3909.111 kb on + strandat 3909.111 kb on + strandat 3909.171 kb on + strandat 3909.171 kb on + strandat 3909.171 kb on + strandat 3909.171 kb on + strandat 3909.171 kb on + strandat 3909.171 kb on + strandat 3909.171 kb on + strandat 3909.172 kb on - strandat 3909.172 kb on - strandat 3909.172 kb on - strandat 3909.172 kb on - strandat 3909.191 kb on + strandat 3909.192 kb on - strandat 3909.192 kb on - strandat 3909.237 kb on + strandat 3909.237 kb on + strandat 3909.237 kb on + strandat 3909.237 kb on + strandat 3909.238 kb on - strandat 3909.238 kb on - strandat 3909.238 kb on - strandat 3909.290 kb on + strandat 3909.290 kb on + strandat 3909.291 kb on - strandat 3909.339 kb on + strandat 3909.339 kb on + strandat 3909.339 kb on + strandat 3909.340 kb on - strandat 3909.349 kb on - strandat 3909.356 kb on + strandat 3909.405 kb on - strand, within ECD_03710at 3909.424 kb on - strand, within ECD_03710at 3909.475 kb on + strand, within ECD_03710at 3909.475 kb on + strand, within ECD_03710at 3909.476 kb on - strand, within ECD_03710at 3909.528 kb on - strand, within ECD_03710at 3909.539 kb on + strand, within ECD_03710at 3909.539 kb on + strand, within ECD_03710at 3909.539 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.648 kb on - strand, within ECD_03710at 3909.790 kb on + strand, within ECD_03710at 3909.851 kb on + strand, within ECD_03710at 3909.884 kb on + strand, within ECD_03710at 3909.885 kb on - strand, within ECD_03710at 3909.974 kb on - strand, within ECD_03710at 3909.974 kb on - strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3910.089 kb on + strand, within ECD_03710at 3910.129 kb on - strand, within ECD_03710at 3910.137 kb on + strand, within ECD_03710at 3910.138 kb on - strand, within ECD_03710at 3910.138 kb on - strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.253 kb on - strand, within ECD_03710at 3910.253 kb on - strand, within ECD_03710at 3910.302 kb on + strand, within ECD_03710at 3910.302 kb on + strand, within ECD_03710at 3910.303 kb on - strand, within ECD_03710at 3910.303 kb on - strand, within ECD_03710at 3910.337 kb on + strand, within ECD_03710at 3910.466 kb on + strandat 3910.472 kb on + strandat 3910.472 kb on + strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.475 kb on + strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.489 kb on - strandat 3910.507 kb on - strandat 3910.523 kb on + strandat 3910.549 kb on - strand, within ECD_03711at 3910.589 kb on - strand, within ECD_03711at 3910.758 kb on + strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.824 kb on + strandat 3910.825 kb on - strandat 3910.870 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.882 kb on - strandat 3910.949 kb on + strandat 3911.137 kb on + strand, within ECD_03712at 3911.137 kb on + strand, within ECD_03712

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,908,252 + -0.4
3,908,252 + +0.7
3,908,252 + +0.5
3,908,252 + +0.2
3,908,252 + +0.3
3,908,253 - +0.2
3,908,253 - +0.2
3,908,253 - +0.5
3,908,253 - -0.1
3,908,253 - +0.7
3,908,253 - -0.3
3,908,253 - -0.1
3,908,253 - -0.2
3,908,253 - +0.6
3,908,253 - +0.5
3,908,253 - +0.5
3,908,253 - +0.9
3,908,262 - +1.2
3,908,290 + +0.2
3,908,309 + +0.8
3,908,310 - +1.7
3,908,310 - +0.7
3,908,314 + -0.8
3,908,341 - +0.2
3,908,365 + ECD_03709 0.10 +0.5
3,908,383 - ECD_03709 0.12 +0.5
3,908,383 - ECD_03709 0.12 -0.6
3,908,403 + ECD_03709 0.14 +0.4
3,908,403 + ECD_03709 0.14 +0.5
3,908,412 + ECD_03709 0.15 -0.5
3,908,412 + ECD_03709 0.15 -0.0
3,908,413 - ECD_03709 0.15 -0.7
3,908,452 - ECD_03709 0.20 +0.2
3,908,452 - ECD_03709 0.20 +0.5
3,908,454 - ECD_03709 0.20 +0.7
3,908,476 + ECD_03709 0.22 -0.3
3,908,476 + ECD_03709 0.22 +1.2
3,908,476 + ECD_03709 0.22 +0.5
3,908,476 + ECD_03709 0.22 +0.6
3,908,477 - ECD_03709 0.23 +1.3
3,908,477 - ECD_03709 0.23 +0.5
3,908,479 + ECD_03709 0.23 +0.2
3,908,560 - ECD_03709 0.32 +0.5
3,908,560 - ECD_03709 0.32 +0.0
3,908,732 + ECD_03709 0.51 +0.6
3,908,733 - ECD_03709 0.51 -0.1
3,908,733 - ECD_03709 0.51 +0.3
3,908,756 + ECD_03709 0.54 +1.0
3,908,757 - ECD_03709 0.54 +1.5
3,908,780 + ECD_03709 0.56 -0.4
3,908,780 + ECD_03709 0.56 +0.5
3,908,780 + ECD_03709 0.56 +1.1
3,908,781 - ECD_03709 0.56 -0.1
3,908,781 - ECD_03709 0.56 +0.2
3,908,781 - ECD_03709 0.56 -0.3
3,908,781 - ECD_03709 0.56 +0.7
3,908,781 - ECD_03709 0.56 +0.2
3,908,782 + ECD_03709 0.57 +0.6
3,908,782 + ECD_03709 0.57 +0.2
3,908,783 - ECD_03709 0.57 +0.6
3,908,783 - ECD_03709 0.57 +0.7
3,908,794 + ECD_03709 0.58 +0.7
3,908,866 - ECD_03709 0.66 -0.5
3,908,869 - ECD_03709 0.66 +0.6
3,908,901 + ECD_03709 0.70 -0.2
3,908,964 + ECD_03709 0.77 -0.1
3,908,978 + ECD_03709 0.78 +0.1
3,908,978 + ECD_03709 0.78 +0.5
3,908,978 + ECD_03709 0.78 +0.5
3,908,979 - ECD_03709 0.78 +0.0
3,908,979 - ECD_03709 0.78 -0.2
3,908,979 - ECD_03709 0.78 -0.3
3,908,979 - ECD_03709 0.78 +0.3
3,909,004 - ECD_03709 0.81 -0.1
3,909,004 - ECD_03709 0.81 +0.6
3,909,005 + ECD_03709 0.81 -0.4
3,909,005 + ECD_03709 0.81 +0.5
3,909,005 + ECD_03709 0.81 -0.4
3,909,005 + ECD_03709 0.81 +0.2
3,909,005 + ECD_03709 0.81 +0.3
3,909,005 + ECD_03709 0.81 +0.1
3,909,006 - ECD_03709 0.81 -0.5
3,909,006 - ECD_03709 0.81 +0.2
3,909,065 + ECD_03709 0.88 +0.2
3,909,066 - ECD_03709 0.88 -1.4
3,909,066 - ECD_03709 0.88 +0.3
3,909,087 + +0.5
3,909,088 - +0.8
3,909,088 - +0.5
3,909,088 - +0.4
3,909,091 + +0.3
3,909,092 - +0.1
3,909,111 + +0.5
3,909,111 + -0.6
3,909,171 + -0.3
3,909,171 + +0.5
3,909,171 + +0.1
3,909,171 + +0.2
3,909,171 + -0.5
3,909,171 + -0.2
3,909,171 + +0.6
3,909,172 - +0.3
3,909,172 - +0.1
3,909,172 - +1.1
3,909,172 - +0.2
3,909,191 + +0.4
3,909,192 - +0.2
3,909,192 - -0.4
3,909,237 + +0.3
3,909,237 + +0.1
3,909,237 + +0.8
3,909,237 + -0.8
3,909,238 - -1.0
3,909,238 - +0.3
3,909,238 - +1.3
3,909,290 + +1.5
3,909,290 + +0.4
3,909,291 - +1.1
3,909,339 + +0.1
3,909,339 + -0.5
3,909,339 + +0.2
3,909,340 - -2.1
3,909,349 - +0.4
3,909,356 + -0.5
3,909,405 - ECD_03710 0.13 -0.3
3,909,424 - ECD_03710 0.14 +0.8
3,909,475 + ECD_03710 0.18 -0.8
3,909,475 + ECD_03710 0.18 +0.8
3,909,476 - ECD_03710 0.19 +0.5
3,909,528 - ECD_03710 0.23 +0.2
3,909,539 + ECD_03710 0.24 -0.3
3,909,539 + ECD_03710 0.24 +0.3
3,909,539 + ECD_03710 0.24 +0.9
3,909,647 + ECD_03710 0.33 +0.5
3,909,647 + ECD_03710 0.33 +0.1
3,909,647 + ECD_03710 0.33 -0.1
3,909,647 + ECD_03710 0.33 +0.3
3,909,648 - ECD_03710 0.33 +0.0
3,909,790 + ECD_03710 0.44 +0.9
3,909,851 + ECD_03710 0.49 -0.8
3,909,884 + ECD_03710 0.52 +0.5
3,909,885 - ECD_03710 0.52 -0.3
3,909,974 - ECD_03710 0.59 +0.6
3,909,974 - ECD_03710 0.59 +0.4
3,909,982 + ECD_03710 0.60 -0.1
3,909,982 + ECD_03710 0.60 +0.6
3,909,982 + ECD_03710 0.60 -0.4
3,909,982 + ECD_03710 0.60 +0.8
3,909,982 + ECD_03710 0.60 -0.2
3,909,983 - ECD_03710 0.60 +0.4
3,909,983 - ECD_03710 0.60 +0.1
3,909,983 - ECD_03710 0.60 +1.2
3,909,983 - ECD_03710 0.60 +0.1
3,910,089 + ECD_03710 0.69 +0.9
3,910,129 - ECD_03710 0.72 +0.3
3,910,137 + ECD_03710 0.73 -0.1
3,910,138 - ECD_03710 0.73 -0.1
3,910,138 - ECD_03710 0.73 +0.0
3,910,154 + ECD_03710 0.74 +1.7
3,910,154 + ECD_03710 0.74 -0.8
3,910,154 + ECD_03710 0.74 +0.2
3,910,155 - ECD_03710 0.74 -0.1
3,910,155 - ECD_03710 0.74 +0.2
3,910,155 - ECD_03710 0.74 -0.2
3,910,252 + ECD_03710 0.82 +0.6
3,910,252 + ECD_03710 0.82 +0.8
3,910,252 + ECD_03710 0.82 +0.6
3,910,252 + ECD_03710 0.82 -0.3
3,910,253 - ECD_03710 0.82 +0.6
3,910,253 - ECD_03710 0.82 +0.0
3,910,302 + ECD_03710 0.86 +0.3
3,910,302 + ECD_03710 0.86 -0.3
3,910,303 - ECD_03710 0.86 +0.8
3,910,303 - ECD_03710 0.86 -0.6
3,910,337 + ECD_03710 0.89 +0.7
3,910,466 + -0.1
3,910,472 + -0.2
3,910,472 + -0.8
3,910,473 - +0.4
3,910,473 - +0.4
3,910,473 - +0.0
3,910,473 - +0.2
3,910,473 - +0.0
3,910,475 + +0.1
3,910,476 - +0.3
3,910,476 - +0.4
3,910,476 - -0.3
3,910,476 - +0.0
3,910,476 - +0.2
3,910,476 - +0.7
3,910,476 - +0.2
3,910,489 - +0.6
3,910,507 - -0.1
3,910,523 + -0.1
3,910,549 - ECD_03711 0.14 +0.2
3,910,589 - ECD_03711 0.26 +0.5
3,910,758 + ECD_03711 0.73 -0.1
3,910,759 - ECD_03711 0.74 -0.8
3,910,759 - ECD_03711 0.74 -0.0
3,910,759 - ECD_03711 0.74 -0.1
3,910,824 + +0.1
3,910,825 - -0.1
3,910,870 + -0.1
3,910,881 + -0.2
3,910,881 + -0.5
3,910,881 + +0.5
3,910,882 - -0.6
3,910,949 + +0.3
3,911,137 + ECD_03712 0.22 +1.4
3,911,137 + ECD_03712 0.22 -1.1

Or see this region's nucleotide sequence