Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03709 and ECD_03710 are separated by 77 nucleotides ECD_03710 and ECD_03711 are separated by 25 nucleotides ECD_03711 and ECD_03712 are separated by 52 nucleotides
ECD_03709: ECD_03709 - hypothetical protein, at 3,908,275 to 3,909,171
_03709
ECD_03710: ECD_03710 - putative permease, at 3,909,249 to 3,910,472
_03710
ECD_03711: ECD_03711 - hypothetical protein, at 3,910,498 to 3,910,851
_03711
ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944
_03712
Position (kb)
3909
3910
3911 Strain fitness (log2 ratio)
-2
-1
0
1 at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.262 kb on - strand at 3908.290 kb on + strand at 3908.309 kb on + strand at 3908.310 kb on - strand at 3908.310 kb on - strand at 3908.314 kb on + strand at 3908.341 kb on - strand at 3908.365 kb on + strand, within ECD_03709 at 3908.383 kb on - strand, within ECD_03709 at 3908.383 kb on - strand, within ECD_03709 at 3908.403 kb on + strand, within ECD_03709 at 3908.403 kb on + strand, within ECD_03709 at 3908.412 kb on + strand, within ECD_03709 at 3908.412 kb on + strand, within ECD_03709 at 3908.413 kb on - strand, within ECD_03709 at 3908.452 kb on - strand, within ECD_03709 at 3908.452 kb on - strand, within ECD_03709 at 3908.454 kb on - strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.477 kb on - strand, within ECD_03709 at 3908.477 kb on - strand, within ECD_03709 at 3908.479 kb on + strand, within ECD_03709 at 3908.560 kb on - strand, within ECD_03709 at 3908.560 kb on - strand, within ECD_03709 at 3908.732 kb on + strand, within ECD_03709 at 3908.733 kb on - strand, within ECD_03709 at 3908.733 kb on - strand, within ECD_03709 at 3908.756 kb on + strand, within ECD_03709 at 3908.757 kb on - strand, within ECD_03709 at 3908.780 kb on + strand, within ECD_03709 at 3908.780 kb on + strand, within ECD_03709 at 3908.780 kb on + strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.782 kb on + strand, within ECD_03709 at 3908.782 kb on + strand, within ECD_03709 at 3908.783 kb on - strand, within ECD_03709 at 3908.783 kb on - strand, within ECD_03709 at 3908.794 kb on + strand, within ECD_03709 at 3908.866 kb on - strand, within ECD_03709 at 3908.869 kb on - strand, within ECD_03709 at 3908.901 kb on + strand, within ECD_03709 at 3908.964 kb on + strand, within ECD_03709 at 3908.978 kb on + strand, within ECD_03709 at 3908.978 kb on + strand, within ECD_03709 at 3908.978 kb on + strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3909.004 kb on - strand, within ECD_03709 at 3909.004 kb on - strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.006 kb on - strand, within ECD_03709 at 3909.006 kb on - strand, within ECD_03709 at 3909.065 kb on + strand, within ECD_03709 at 3909.066 kb on - strand, within ECD_03709 at 3909.066 kb on - strand, within ECD_03709 at 3909.087 kb on + strand at 3909.088 kb on - strand at 3909.088 kb on - strand at 3909.088 kb on - strand at 3909.091 kb on + strand at 3909.092 kb on - strand at 3909.111 kb on + strand at 3909.111 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.172 kb on - strand at 3909.172 kb on - strand at 3909.172 kb on - strand at 3909.172 kb on - strand at 3909.191 kb on + strand at 3909.192 kb on - strand at 3909.192 kb on - strand at 3909.237 kb on + strand at 3909.237 kb on + strand at 3909.237 kb on + strand at 3909.237 kb on + strand at 3909.238 kb on - strand at 3909.238 kb on - strand at 3909.238 kb on - strand at 3909.290 kb on + strand at 3909.290 kb on + strand at 3909.291 kb on - strand at 3909.339 kb on + strand at 3909.339 kb on + strand at 3909.339 kb on + strand at 3909.340 kb on - strand at 3909.349 kb on - strand at 3909.356 kb on + strand at 3909.405 kb on - strand, within ECD_03710 at 3909.424 kb on - strand, within ECD_03710 at 3909.475 kb on + strand, within ECD_03710 at 3909.475 kb on + strand, within ECD_03710 at 3909.476 kb on - strand, within ECD_03710 at 3909.528 kb on - strand, within ECD_03710 at 3909.539 kb on + strand, within ECD_03710 at 3909.539 kb on + strand, within ECD_03710 at 3909.539 kb on + strand, within ECD_03710 at 3909.647 kb on + strand, within ECD_03710 at 3909.647 kb on + strand, within ECD_03710 at 3909.647 kb on + strand, within ECD_03710 at 3909.647 kb on + strand, within ECD_03710 at 3909.648 kb on - strand, within ECD_03710 at 3909.790 kb on + strand, within ECD_03710 at 3909.851 kb on + strand, within ECD_03710 at 3909.884 kb on + strand, within ECD_03710 at 3909.885 kb on - strand, within ECD_03710 at 3909.974 kb on - strand, within ECD_03710 at 3909.974 kb on - strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.982 kb on + strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3909.983 kb on - strand, within ECD_03710 at 3910.089 kb on + strand, within ECD_03710 at 3910.129 kb on - strand, within ECD_03710 at 3910.137 kb on + strand, within ECD_03710 at 3910.138 kb on - strand, within ECD_03710 at 3910.138 kb on - strand, within ECD_03710 at 3910.154 kb on + strand, within ECD_03710 at 3910.154 kb on + strand, within ECD_03710 at 3910.154 kb on + strand, within ECD_03710 at 3910.155 kb on - strand, within ECD_03710 at 3910.155 kb on - strand, within ECD_03710 at 3910.155 kb on - strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.252 kb on + strand, within ECD_03710 at 3910.253 kb on - strand, within ECD_03710 at 3910.253 kb on - strand, within ECD_03710 at 3910.302 kb on + strand, within ECD_03710 at 3910.302 kb on + strand, within ECD_03710 at 3910.303 kb on - strand, within ECD_03710 at 3910.303 kb on - strand, within ECD_03710 at 3910.337 kb on + strand, within ECD_03710 at 3910.466 kb on + strand at 3910.472 kb on + strand at 3910.472 kb on + strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.473 kb on - strand at 3910.475 kb on + strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.476 kb on - strand at 3910.489 kb on - strand at 3910.507 kb on - strand at 3910.523 kb on + strand at 3910.549 kb on - strand, within ECD_03711 at 3910.589 kb on - strand, within ECD_03711 at 3910.758 kb on + strand, within ECD_03711 at 3910.759 kb on - strand, within ECD_03711 at 3910.759 kb on - strand, within ECD_03711 at 3910.759 kb on - strand, within ECD_03711 at 3910.824 kb on + strand at 3910.825 kb on - strand at 3910.870 kb on + strand at 3910.881 kb on + strand at 3910.881 kb on + strand at 3910.881 kb on + strand at 3910.882 kb on - strand at 3910.949 kb on + strand at 3911.137 kb on + strand, within ECD_03712 at 3911.137 kb on + strand, within ECD_03712
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,908,252 + -0.4 3,908,252 + +0.7 3,908,252 + +0.5 3,908,252 + +0.2 3,908,252 + +0.3 3,908,253 - +0.2 3,908,253 - +0.2 3,908,253 - +0.5 3,908,253 - -0.1 3,908,253 - +0.7 3,908,253 - -0.3 3,908,253 - -0.1 3,908,253 - -0.2 3,908,253 - +0.6 3,908,253 - +0.5 3,908,253 - +0.5 3,908,253 - +0.9 3,908,262 - +1.2 3,908,290 + +0.2 3,908,309 + +0.8 3,908,310 - +1.7 3,908,310 - +0.7 3,908,314 + -0.8 3,908,341 - +0.2 3,908,365 + ECD_03709 0.10 +0.5 3,908,383 - ECD_03709 0.12 +0.5 3,908,383 - ECD_03709 0.12 -0.6 3,908,403 + ECD_03709 0.14 +0.4 3,908,403 + ECD_03709 0.14 +0.5 3,908,412 + ECD_03709 0.15 -0.5 3,908,412 + ECD_03709 0.15 -0.0 3,908,413 - ECD_03709 0.15 -0.7 3,908,452 - ECD_03709 0.20 +0.2 3,908,452 - ECD_03709 0.20 +0.5 3,908,454 - ECD_03709 0.20 +0.7 3,908,476 + ECD_03709 0.22 -0.3 3,908,476 + ECD_03709 0.22 +1.2 3,908,476 + ECD_03709 0.22 +0.5 3,908,476 + ECD_03709 0.22 +0.6 3,908,477 - ECD_03709 0.23 +1.3 3,908,477 - ECD_03709 0.23 +0.5 3,908,479 + ECD_03709 0.23 +0.2 3,908,560 - ECD_03709 0.32 +0.5 3,908,560 - ECD_03709 0.32 +0.0 3,908,732 + ECD_03709 0.51 +0.6 3,908,733 - ECD_03709 0.51 -0.1 3,908,733 - ECD_03709 0.51 +0.3 3,908,756 + ECD_03709 0.54 +1.0 3,908,757 - ECD_03709 0.54 +1.5 3,908,780 + ECD_03709 0.56 -0.4 3,908,780 + ECD_03709 0.56 +0.5 3,908,780 + ECD_03709 0.56 +1.1 3,908,781 - ECD_03709 0.56 -0.1 3,908,781 - ECD_03709 0.56 +0.2 3,908,781 - ECD_03709 0.56 -0.3 3,908,781 - ECD_03709 0.56 +0.7 3,908,781 - ECD_03709 0.56 +0.2 3,908,782 + ECD_03709 0.57 +0.6 3,908,782 + ECD_03709 0.57 +0.2 3,908,783 - ECD_03709 0.57 +0.6 3,908,783 - ECD_03709 0.57 +0.7 3,908,794 + ECD_03709 0.58 +0.7 3,908,866 - ECD_03709 0.66 -0.5 3,908,869 - ECD_03709 0.66 +0.6 3,908,901 + ECD_03709 0.70 -0.2 3,908,964 + ECD_03709 0.77 -0.1 3,908,978 + ECD_03709 0.78 +0.1 3,908,978 + ECD_03709 0.78 +0.5 3,908,978 + ECD_03709 0.78 +0.5 3,908,979 - ECD_03709 0.78 +0.0 3,908,979 - ECD_03709 0.78 -0.2 3,908,979 - ECD_03709 0.78 -0.3 3,908,979 - ECD_03709 0.78 +0.3 3,909,004 - ECD_03709 0.81 -0.1 3,909,004 - ECD_03709 0.81 +0.6 3,909,005 + ECD_03709 0.81 -0.4 3,909,005 + ECD_03709 0.81 +0.5 3,909,005 + ECD_03709 0.81 -0.4 3,909,005 + ECD_03709 0.81 +0.2 3,909,005 + ECD_03709 0.81 +0.3 3,909,005 + ECD_03709 0.81 +0.1 3,909,006 - ECD_03709 0.81 -0.5 3,909,006 - ECD_03709 0.81 +0.2 3,909,065 + ECD_03709 0.88 +0.2 3,909,066 - ECD_03709 0.88 -1.4 3,909,066 - ECD_03709 0.88 +0.3 3,909,087 + +0.5 3,909,088 - +0.8 3,909,088 - +0.5 3,909,088 - +0.4 3,909,091 + +0.3 3,909,092 - +0.1 3,909,111 + +0.5 3,909,111 + -0.6 3,909,171 + -0.3 3,909,171 + +0.5 3,909,171 + +0.1 3,909,171 + +0.2 3,909,171 + -0.5 3,909,171 + -0.2 3,909,171 + +0.6 3,909,172 - +0.3 3,909,172 - +0.1 3,909,172 - +1.1 3,909,172 - +0.2 3,909,191 + +0.4 3,909,192 - +0.2 3,909,192 - -0.4 3,909,237 + +0.3 3,909,237 + +0.1 3,909,237 + +0.8 3,909,237 + -0.8 3,909,238 - -1.0 3,909,238 - +0.3 3,909,238 - +1.3 3,909,290 + +1.5 3,909,290 + +0.4 3,909,291 - +1.1 3,909,339 + +0.1 3,909,339 + -0.5 3,909,339 + +0.2 3,909,340 - -2.1 3,909,349 - +0.4 3,909,356 + -0.5 3,909,405 - ECD_03710 0.13 -0.3 3,909,424 - ECD_03710 0.14 +0.8 3,909,475 + ECD_03710 0.18 -0.8 3,909,475 + ECD_03710 0.18 +0.8 3,909,476 - ECD_03710 0.19 +0.5 3,909,528 - ECD_03710 0.23 +0.2 3,909,539 + ECD_03710 0.24 -0.3 3,909,539 + ECD_03710 0.24 +0.3 3,909,539 + ECD_03710 0.24 +0.9 3,909,647 + ECD_03710 0.33 +0.5 3,909,647 + ECD_03710 0.33 +0.1 3,909,647 + ECD_03710 0.33 -0.1 3,909,647 + ECD_03710 0.33 +0.3 3,909,648 - ECD_03710 0.33 +0.0 3,909,790 + ECD_03710 0.44 +0.9 3,909,851 + ECD_03710 0.49 -0.8 3,909,884 + ECD_03710 0.52 +0.5 3,909,885 - ECD_03710 0.52 -0.3 3,909,974 - ECD_03710 0.59 +0.6 3,909,974 - ECD_03710 0.59 +0.4 3,909,982 + ECD_03710 0.60 -0.1 3,909,982 + ECD_03710 0.60 +0.6 3,909,982 + ECD_03710 0.60 -0.4 3,909,982 + ECD_03710 0.60 +0.8 3,909,982 + ECD_03710 0.60 -0.2 3,909,983 - ECD_03710 0.60 +0.4 3,909,983 - ECD_03710 0.60 +0.1 3,909,983 - ECD_03710 0.60 +1.2 3,909,983 - ECD_03710 0.60 +0.1 3,910,089 + ECD_03710 0.69 +0.9 3,910,129 - ECD_03710 0.72 +0.3 3,910,137 + ECD_03710 0.73 -0.1 3,910,138 - ECD_03710 0.73 -0.1 3,910,138 - ECD_03710 0.73 +0.0 3,910,154 + ECD_03710 0.74 +1.7 3,910,154 + ECD_03710 0.74 -0.8 3,910,154 + ECD_03710 0.74 +0.2 3,910,155 - ECD_03710 0.74 -0.1 3,910,155 - ECD_03710 0.74 +0.2 3,910,155 - ECD_03710 0.74 -0.2 3,910,252 + ECD_03710 0.82 +0.6 3,910,252 + ECD_03710 0.82 +0.8 3,910,252 + ECD_03710 0.82 +0.6 3,910,252 + ECD_03710 0.82 -0.3 3,910,253 - ECD_03710 0.82 +0.6 3,910,253 - ECD_03710 0.82 +0.0 3,910,302 + ECD_03710 0.86 +0.3 3,910,302 + ECD_03710 0.86 -0.3 3,910,303 - ECD_03710 0.86 +0.8 3,910,303 - ECD_03710 0.86 -0.6 3,910,337 + ECD_03710 0.89 +0.7 3,910,466 + -0.1 3,910,472 + -0.2 3,910,472 + -0.8 3,910,473 - +0.4 3,910,473 - +0.4 3,910,473 - +0.0 3,910,473 - +0.2 3,910,473 - +0.0 3,910,475 + +0.1 3,910,476 - +0.3 3,910,476 - +0.4 3,910,476 - -0.3 3,910,476 - +0.0 3,910,476 - +0.2 3,910,476 - +0.7 3,910,476 - +0.2 3,910,489 - +0.6 3,910,507 - -0.1 3,910,523 + -0.1 3,910,549 - ECD_03711 0.14 +0.2 3,910,589 - ECD_03711 0.26 +0.5 3,910,758 + ECD_03711 0.73 -0.1 3,910,759 - ECD_03711 0.74 -0.8 3,910,759 - ECD_03711 0.74 -0.0 3,910,759 - ECD_03711 0.74 -0.1 3,910,824 + +0.1 3,910,825 - -0.1 3,910,870 + -0.1 3,910,881 + -0.2 3,910,881 + -0.5 3,910,881 + +0.5 3,910,882 - -0.6 3,910,949 + +0.3 3,911,137 + ECD_03712 0.22 +1.4 3,911,137 + ECD_03712 0.22 -1.1
Or see this region's nucleotide sequence