Strain Fitness in Escherichia coli BL21 around ECD_03707

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03705 and ECD_03706 are separated by 75 nucleotidesECD_03706 and ECD_03707 overlap by 113 nucleotidesECD_03707 and ECD_03708 are separated by 236 nucleotides ECD_03705: ECD_03705 - pyridoxal phosphate phosphatase, at 3,903,067 to 3,903,867 _03705 ECD_03706: ECD_03706 - putative inner membrane EamA-like transporter, at 3,903,943 to 3,904,842 _03706 ECD_03707: ECD_03707 - methionine biosynthesis regulon transcriptional regulator, at 3,904,730 to 3,905,683 _03707 ECD_03708: ECD_03708 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 3,905,920 to 3,908,181 _03708 Position (kb) 3904 3905 3906Strain fitness (log2 ratio) -2 -1 0 1 2at 3903.850 kb on - strandat 3903.856 kb on + strandat 3903.856 kb on + strandat 3903.856 kb on + strandat 3903.856 kb on + strandat 3903.857 kb on - strandat 3903.857 kb on - strandat 3903.899 kb on + strandat 3903.954 kb on + strandat 3903.954 kb on + strandat 3903.954 kb on + strandat 3903.954 kb on + strandat 3903.955 kb on - strandat 3903.955 kb on - strandat 3903.955 kb on - strandat 3903.988 kb on - strandat 3903.994 kb on + strandat 3904.003 kb on + strandat 3904.027 kb on + strandat 3904.027 kb on + strandat 3904.027 kb on + strandat 3904.028 kb on - strandat 3904.120 kb on + strand, within ECD_03706at 3904.120 kb on + strand, within ECD_03706at 3904.120 kb on + strand, within ECD_03706at 3904.120 kb on + strand, within ECD_03706at 3904.120 kb on + strand, within ECD_03706at 3904.121 kb on - strand, within ECD_03706at 3904.121 kb on - strand, within ECD_03706at 3904.121 kb on - strand, within ECD_03706at 3904.121 kb on - strand, within ECD_03706at 3904.121 kb on - strand, within ECD_03706at 3904.122 kb on + strand, within ECD_03706at 3904.122 kb on + strand, within ECD_03706at 3904.122 kb on + strand, within ECD_03706at 3904.122 kb on + strand, within ECD_03706at 3904.122 kb on + strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.123 kb on - strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.156 kb on + strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.157 kb on - strand, within ECD_03706at 3904.158 kb on + strand, within ECD_03706at 3904.158 kb on + strand, within ECD_03706at 3904.158 kb on + strand, within ECD_03706at 3904.158 kb on + strand, within ECD_03706at 3904.158 kb on + strand, within ECD_03706at 3904.158 kb on + strand, within ECD_03706at 3904.159 kb on - strand, within ECD_03706at 3904.178 kb on - strand, within ECD_03706at 3904.178 kb on - strand, within ECD_03706at 3904.178 kb on - strand, within ECD_03706at 3904.231 kb on + strand, within ECD_03706at 3904.246 kb on + strand, within ECD_03706at 3904.246 kb on + strand, within ECD_03706at 3904.283 kb on - strand, within ECD_03706at 3904.415 kb on - strand, within ECD_03706at 3904.453 kb on - strand, within ECD_03706at 3904.598 kb on - strand, within ECD_03706at 3904.602 kb on + strand, within ECD_03706at 3904.602 kb on + strand, within ECD_03706at 3904.603 kb on - strand, within ECD_03706at 3904.613 kb on - strand, within ECD_03706at 3904.650 kb on + strand, within ECD_03706at 3904.656 kb on + strand, within ECD_03706at 3904.656 kb on + strand, within ECD_03706at 3904.657 kb on - strand, within ECD_03706at 3904.659 kb on + strand, within ECD_03706at 3904.659 kb on + strand, within ECD_03706at 3904.660 kb on - strand, within ECD_03706at 3904.685 kb on + strand, within ECD_03706at 3904.686 kb on - strand, within ECD_03706at 3904.728 kb on + strand, within ECD_03706at 3904.729 kb on - strand, within ECD_03706at 3904.731 kb on + strandat 3904.732 kb on - strandat 3904.773 kb on + strandat 3904.773 kb on + strandat 3904.774 kb on - strandat 3904.853 kb on - strand, within ECD_03707at 3904.890 kb on + strand, within ECD_03707at 3905.018 kb on + strand, within ECD_03707at 3905.018 kb on + strand, within ECD_03707at 3905.147 kb on - strand, within ECD_03707at 3905.203 kb on - strand, within ECD_03707at 3905.245 kb on + strand, within ECD_03707at 3905.245 kb on + strand, within ECD_03707at 3905.245 kb on + strand, within ECD_03707at 3905.245 kb on + strand, within ECD_03707at 3905.360 kb on + strand, within ECD_03707at 3905.383 kb on + strand, within ECD_03707at 3905.389 kb on + strand, within ECD_03707at 3905.389 kb on + strand, within ECD_03707at 3905.389 kb on + strand, within ECD_03707at 3905.389 kb on + strand, within ECD_03707at 3905.389 kb on + strand, within ECD_03707at 3905.390 kb on - strand, within ECD_03707at 3905.390 kb on - strand, within ECD_03707at 3905.390 kb on - strand, within ECD_03707at 3905.399 kb on + strand, within ECD_03707at 3905.400 kb on - strand, within ECD_03707at 3905.509 kb on + strand, within ECD_03707at 3905.509 kb on + strand, within ECD_03707at 3905.541 kb on - strand, within ECD_03707at 3905.541 kb on - strand, within ECD_03707at 3905.572 kb on + strand, within ECD_03707at 3905.573 kb on - strand, within ECD_03707at 3905.672 kb on + strandat 3905.672 kb on + strandat 3905.673 kb on - strandat 3905.708 kb on + strandat 3905.726 kb on + strandat 3905.727 kb on - strandat 3905.728 kb on + strandat 3905.728 kb on + strandat 3905.728 kb on + strandat 3905.728 kb on + strandat 3905.729 kb on - strandat 3905.729 kb on - strandat 3905.729 kb on - strandat 3905.729 kb on - strandat 3905.793 kb on + strandat 3905.830 kb on + strandat 3905.831 kb on - strandat 3905.831 kb on - strandat 3905.839 kb on - strandat 3905.897 kb on - strandat 3905.900 kb on + strandat 3906.048 kb on - strandat 3906.048 kb on - strandat 3906.118 kb on + strandat 3906.119 kb on - strandat 3906.128 kb on + strandat 3906.128 kb on + strandat 3906.128 kb on + strandat 3906.128 kb on + strandat 3906.128 kb on + strandat 3906.128 kb on + strandat 3906.129 kb on - strandat 3906.129 kb on - strandat 3906.129 kb on - strandat 3906.153 kb on + strand, within ECD_03708at 3906.191 kb on + strand, within ECD_03708at 3906.286 kb on + strand, within ECD_03708at 3906.286 kb on + strand, within ECD_03708at 3906.287 kb on - strand, within ECD_03708at 3906.287 kb on - strand, within ECD_03708at 3906.287 kb on - strand, within ECD_03708at 3906.287 kb on - strand, within ECD_03708at 3906.287 kb on - strand, within ECD_03708at 3906.292 kb on + strand, within ECD_03708at 3906.292 kb on + strand, within ECD_03708at 3906.292 kb on + strand, within ECD_03708at 3906.292 kb on + strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.293 kb on - strand, within ECD_03708at 3906.593 kb on - strand, within ECD_03708at 3906.682 kb on - strand, within ECD_03708

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,903,850 - -0.2
3,903,856 + +0.3
3,903,856 + -0.0
3,903,856 + +0.4
3,903,856 + +0.8
3,903,857 - -0.4
3,903,857 - +0.3
3,903,899 + +0.1
3,903,954 + -0.2
3,903,954 + +0.2
3,903,954 + +1.9
3,903,954 + +0.2
3,903,955 - +0.5
3,903,955 - +0.5
3,903,955 - -0.9
3,903,988 - -0.3
3,903,994 + +0.0
3,904,003 + +0.7
3,904,027 + +0.8
3,904,027 + +0.2
3,904,027 + +0.2
3,904,028 - -0.5
3,904,120 + ECD_03706 0.20 -0.2
3,904,120 + ECD_03706 0.20 -0.5
3,904,120 + ECD_03706 0.20 +0.5
3,904,120 + ECD_03706 0.20 +0.5
3,904,120 + ECD_03706 0.20 -0.1
3,904,121 - ECD_03706 0.20 +1.0
3,904,121 - ECD_03706 0.20 +0.5
3,904,121 - ECD_03706 0.20 +1.6
3,904,121 - ECD_03706 0.20 +0.2
3,904,121 - ECD_03706 0.20 -0.5
3,904,122 + ECD_03706 0.20 +0.0
3,904,122 + ECD_03706 0.20 +0.1
3,904,122 + ECD_03706 0.20 +0.4
3,904,122 + ECD_03706 0.20 +0.4
3,904,122 + ECD_03706 0.20 +0.2
3,904,123 - ECD_03706 0.20 +0.4
3,904,123 - ECD_03706 0.20 -0.2
3,904,123 - ECD_03706 0.20 +1.5
3,904,123 - ECD_03706 0.20 +0.3
3,904,123 - ECD_03706 0.20 -0.4
3,904,123 - ECD_03706 0.20 -0.3
3,904,123 - ECD_03706 0.20 -1.1
3,904,123 - ECD_03706 0.20 +0.2
3,904,156 + ECD_03706 0.24 -1.0
3,904,156 + ECD_03706 0.24 -0.6
3,904,156 + ECD_03706 0.24 -0.5
3,904,156 + ECD_03706 0.24 +0.6
3,904,156 + ECD_03706 0.24 -0.1
3,904,156 + ECD_03706 0.24 +0.5
3,904,156 + ECD_03706 0.24 +0.3
3,904,156 + ECD_03706 0.24 +0.5
3,904,156 + ECD_03706 0.24 -2.4
3,904,156 + ECD_03706 0.24 +0.0
3,904,156 + ECD_03706 0.24 +0.4
3,904,156 + ECD_03706 0.24 +0.1
3,904,157 - ECD_03706 0.24 +0.8
3,904,157 - ECD_03706 0.24 +0.4
3,904,157 - ECD_03706 0.24 +0.8
3,904,157 - ECD_03706 0.24 +0.5
3,904,157 - ECD_03706 0.24 -2.2
3,904,157 - ECD_03706 0.24 -0.8
3,904,157 - ECD_03706 0.24 +0.4
3,904,157 - ECD_03706 0.24 +0.9
3,904,158 + ECD_03706 0.24 +0.3
3,904,158 + ECD_03706 0.24 +0.3
3,904,158 + ECD_03706 0.24 +0.8
3,904,158 + ECD_03706 0.24 +0.8
3,904,158 + ECD_03706 0.24 -0.2
3,904,158 + ECD_03706 0.24 +0.5
3,904,159 - ECD_03706 0.24 +0.1
3,904,178 - ECD_03706 0.26 +0.2
3,904,178 - ECD_03706 0.26 -0.1
3,904,178 - ECD_03706 0.26 -0.2
3,904,231 + ECD_03706 0.32 -0.6
3,904,246 + ECD_03706 0.34 +0.5
3,904,246 + ECD_03706 0.34 +0.0
3,904,283 - ECD_03706 0.38 -0.5
3,904,415 - ECD_03706 0.52 +0.4
3,904,453 - ECD_03706 0.57 -0.2
3,904,598 - ECD_03706 0.73 +1.9
3,904,602 + ECD_03706 0.73 +0.2
3,904,602 + ECD_03706 0.73 -0.1
3,904,603 - ECD_03706 0.73 +0.2
3,904,613 - ECD_03706 0.74 +1.2
3,904,650 + ECD_03706 0.79 -0.1
3,904,656 + ECD_03706 0.79 -0.3
3,904,656 + ECD_03706 0.79 +0.1
3,904,657 - ECD_03706 0.79 +0.5
3,904,659 + ECD_03706 0.80 -2.5
3,904,659 + ECD_03706 0.80 +0.3
3,904,660 - ECD_03706 0.80 -0.1
3,904,685 + ECD_03706 0.82 +0.4
3,904,686 - ECD_03706 0.83 -0.5
3,904,728 + ECD_03706 0.87 +0.2
3,904,729 - ECD_03706 0.87 +0.1
3,904,731 + -1.5
3,904,732 - +0.6
3,904,773 + +0.1
3,904,773 + +0.7
3,904,774 - +0.3
3,904,853 - ECD_03707 0.13 +0.9
3,904,890 + ECD_03707 0.17 -0.3
3,905,018 + ECD_03707 0.30 +0.4
3,905,018 + ECD_03707 0.30 +0.7
3,905,147 - ECD_03707 0.44 +0.3
3,905,203 - ECD_03707 0.50 +0.1
3,905,245 + ECD_03707 0.54 +0.4
3,905,245 + ECD_03707 0.54 +0.5
3,905,245 + ECD_03707 0.54 +0.4
3,905,245 + ECD_03707 0.54 -0.2
3,905,360 + ECD_03707 0.66 +0.5
3,905,383 + ECD_03707 0.68 +1.8
3,905,389 + ECD_03707 0.69 +0.1
3,905,389 + ECD_03707 0.69 -0.3
3,905,389 + ECD_03707 0.69 +0.6
3,905,389 + ECD_03707 0.69 +0.6
3,905,389 + ECD_03707 0.69 +2.5
3,905,390 - ECD_03707 0.69 +1.1
3,905,390 - ECD_03707 0.69 +1.1
3,905,390 - ECD_03707 0.69 +0.2
3,905,399 + ECD_03707 0.70 +0.2
3,905,400 - ECD_03707 0.70 +0.2
3,905,509 + ECD_03707 0.82 +0.6
3,905,509 + ECD_03707 0.82 -0.7
3,905,541 - ECD_03707 0.85 +0.4
3,905,541 - ECD_03707 0.85 +0.5
3,905,572 + ECD_03707 0.88 +2.0
3,905,573 - ECD_03707 0.88 +0.4
3,905,672 + -0.1
3,905,672 + +0.0
3,905,673 - +0.0
3,905,708 + -0.7
3,905,726 + -0.1
3,905,727 - +0.3
3,905,728 + +0.2
3,905,728 + -0.6
3,905,728 + +0.4
3,905,728 + -0.2
3,905,729 - +0.3
3,905,729 - +1.1
3,905,729 - +0.4
3,905,729 - +0.5
3,905,793 + +1.3
3,905,830 + +0.0
3,905,831 - +0.8
3,905,831 - +0.9
3,905,839 - +0.7
3,905,897 - +0.4
3,905,900 + +0.6
3,906,048 - +0.3
3,906,048 - +1.0
3,906,118 + +0.4
3,906,119 - +1.3
3,906,128 + +1.3
3,906,128 + +0.4
3,906,128 + +0.4
3,906,128 + -0.0
3,906,128 + +0.4
3,906,128 + +0.8
3,906,129 - +0.4
3,906,129 - +0.5
3,906,129 - +0.6
3,906,153 + ECD_03708 0.10 +1.3
3,906,191 + ECD_03708 0.12 +0.4
3,906,286 + ECD_03708 0.16 -1.1
3,906,286 + ECD_03708 0.16 +1.5
3,906,287 - ECD_03708 0.16 +1.3
3,906,287 - ECD_03708 0.16 -0.1
3,906,287 - ECD_03708 0.16 +0.6
3,906,287 - ECD_03708 0.16 -0.0
3,906,287 - ECD_03708 0.16 -0.1
3,906,292 + ECD_03708 0.16 +0.1
3,906,292 + ECD_03708 0.16 +0.2
3,906,292 + ECD_03708 0.16 +0.6
3,906,292 + ECD_03708 0.16 +0.4
3,906,293 - ECD_03708 0.16 -0.7
3,906,293 - ECD_03708 0.16 +0.7
3,906,293 - ECD_03708 0.16 +0.5
3,906,293 - ECD_03708 0.16 -0.7
3,906,293 - ECD_03708 0.16 +0.8
3,906,293 - ECD_03708 0.16 +0.0
3,906,293 - ECD_03708 0.16 -0.1
3,906,593 - ECD_03708 0.30 -0.5
3,906,682 - ECD_03708 0.34 +1.2

Or see this region's nucleotide sequence