Strain Fitness in Escherichia coli BL21 around ECD_03635

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04284 and ECD_04285 overlap by 4 nucleotidesECD_04285 and ECD_03635 are separated by 286 nucleotidesECD_03635 and ECD_03636 are separated by 4 nucleotidesECD_03636 and ECD_03637 are separated by 24 nucleotides ECD_04284: ECD_04284 - IS150 putative transposase, at 3,822,369 to 3,823,220 _04284 ECD_04285: ECD_04285 - IS150 hypothetical protein, at 3,823,217 to 3,823,738 _04285 ECD_03635: ECD_03635 - D-ribose ABC transporter ATPase, at 3,824,025 to 3,825,530 _03635 ECD_03636: ECD_03636 - D-ribose ABC transporter permease, at 3,825,535 to 3,826,500 _03636 ECD_03637: ECD_03637 - D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor, at 3,826,525 to 3,827,415 _03637 Position (kb) 3824 3825 3826Strain fitness (log2 ratio) -2 -1 0 1at 3823.782 kb on + strandat 3823.825 kb on + strandat 3823.953 kb on + strandat 3823.980 kb on - strandat 3824.035 kb on + strandat 3824.035 kb on + strandat 3824.045 kb on + strandat 3824.098 kb on + strandat 3824.099 kb on - strandat 3824.099 kb on - strandat 3824.106 kb on + strandat 3824.180 kb on + strand, within ECD_03635at 3824.180 kb on + strand, within ECD_03635at 3824.180 kb on + strand, within ECD_03635at 3824.184 kb on + strand, within ECD_03635at 3824.184 kb on + strand, within ECD_03635at 3824.184 kb on + strand, within ECD_03635at 3824.184 kb on + strand, within ECD_03635at 3824.184 kb on + strand, within ECD_03635at 3824.185 kb on - strand, within ECD_03635at 3824.185 kb on - strand, within ECD_03635at 3824.185 kb on - strand, within ECD_03635at 3824.185 kb on - strand, within ECD_03635at 3824.209 kb on + strand, within ECD_03635at 3824.210 kb on - strand, within ECD_03635at 3824.210 kb on - strand, within ECD_03635at 3824.379 kb on + strand, within ECD_03635at 3824.379 kb on + strand, within ECD_03635at 3824.380 kb on - strand, within ECD_03635at 3824.394 kb on - strand, within ECD_03635at 3824.516 kb on + strand, within ECD_03635at 3824.517 kb on - strand, within ECD_03635at 3824.610 kb on + strand, within ECD_03635at 3824.610 kb on + strand, within ECD_03635at 3824.610 kb on + strand, within ECD_03635at 3824.610 kb on + strand, within ECD_03635at 3824.610 kb on + strand, within ECD_03635at 3824.611 kb on - strand, within ECD_03635at 3824.611 kb on - strand, within ECD_03635at 3824.611 kb on - strand, within ECD_03635at 3824.611 kb on - strand, within ECD_03635at 3824.611 kb on - strand, within ECD_03635at 3824.612 kb on + strand, within ECD_03635at 3824.612 kb on + strand, within ECD_03635at 3824.613 kb on - strand, within ECD_03635at 3824.613 kb on - strand, within ECD_03635at 3824.613 kb on - strand, within ECD_03635at 3824.682 kb on - strand, within ECD_03635at 3824.844 kb on - strand, within ECD_03635at 3824.848 kb on + strand, within ECD_03635at 3824.929 kb on + strand, within ECD_03635at 3824.947 kb on - strand, within ECD_03635at 3824.947 kb on - strand, within ECD_03635at 3825.015 kb on + strand, within ECD_03635at 3825.015 kb on + strand, within ECD_03635at 3825.015 kb on + strand, within ECD_03635at 3825.016 kb on - strand, within ECD_03635at 3825.016 kb on - strand, within ECD_03635at 3825.016 kb on - strand, within ECD_03635at 3825.016 kb on - strand, within ECD_03635at 3825.033 kb on - strand, within ECD_03635at 3825.046 kb on + strand, within ECD_03635at 3825.046 kb on + strand, within ECD_03635at 3825.046 kb on + strand, within ECD_03635at 3825.096 kb on + strand, within ECD_03635at 3825.301 kb on + strand, within ECD_03635at 3825.301 kb on + strand, within ECD_03635at 3825.327 kb on + strand, within ECD_03635at 3825.327 kb on + strand, within ECD_03635at 3825.327 kb on + strand, within ECD_03635at 3825.328 kb on - strand, within ECD_03635at 3825.398 kb on - strandat 3825.398 kb on - strandat 3825.400 kb on + strandat 3825.401 kb on - strandat 3825.509 kb on + strandat 3825.509 kb on + strandat 3825.566 kb on - strandat 3825.666 kb on + strand, within ECD_03636at 3825.671 kb on + strand, within ECD_03636at 3825.678 kb on + strand, within ECD_03636at 3825.678 kb on + strand, within ECD_03636at 3825.708 kb on + strand, within ECD_03636at 3825.708 kb on + strand, within ECD_03636at 3825.755 kb on + strand, within ECD_03636at 3825.756 kb on - strand, within ECD_03636at 3825.762 kb on - strand, within ECD_03636at 3825.762 kb on - strand, within ECD_03636at 3825.801 kb on + strand, within ECD_03636at 3825.801 kb on + strand, within ECD_03636at 3825.801 kb on + strand, within ECD_03636at 3825.801 kb on + strand, within ECD_03636at 3825.802 kb on - strand, within ECD_03636at 3825.802 kb on - strand, within ECD_03636at 3825.942 kb on - strand, within ECD_03636at 3825.965 kb on - strand, within ECD_03636at 3825.966 kb on + strand, within ECD_03636at 3825.966 kb on + strand, within ECD_03636at 3826.096 kb on + strand, within ECD_03636at 3826.096 kb on + strand, within ECD_03636at 3826.096 kb on + strand, within ECD_03636at 3826.097 kb on - strand, within ECD_03636at 3826.097 kb on - strand, within ECD_03636at 3826.126 kb on + strand, within ECD_03636at 3826.127 kb on - strand, within ECD_03636at 3826.127 kb on - strand, within ECD_03636at 3826.133 kb on - strand, within ECD_03636at 3826.133 kb on - strand, within ECD_03636at 3826.133 kb on - strand, within ECD_03636at 3826.205 kb on - strand, within ECD_03636at 3826.291 kb on + strand, within ECD_03636at 3826.292 kb on - strand, within ECD_03636at 3826.382 kb on + strand, within ECD_03636at 3826.399 kb on - strand, within ECD_03636at 3826.432 kb on + strandat 3826.432 kb on + strandat 3826.482 kb on - strandat 3826.482 kb on - strandat 3826.502 kb on - strandat 3826.524 kb on + strandat 3826.524 kb on + strandat 3826.524 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,823,782 + +0.0
3,823,825 + +0.5
3,823,953 + +0.9
3,823,980 - +0.5
3,824,035 + +0.9
3,824,035 + +0.8
3,824,045 + -0.0
3,824,098 + +0.1
3,824,099 - +0.6
3,824,099 - -1.4
3,824,106 + -0.8
3,824,180 + ECD_03635 0.10 -0.2
3,824,180 + ECD_03635 0.10 -1.3
3,824,180 + ECD_03635 0.10 -0.4
3,824,184 + ECD_03635 0.11 +1.2
3,824,184 + ECD_03635 0.11 +0.4
3,824,184 + ECD_03635 0.11 -0.1
3,824,184 + ECD_03635 0.11 -0.9
3,824,184 + ECD_03635 0.11 +0.4
3,824,185 - ECD_03635 0.11 +0.3
3,824,185 - ECD_03635 0.11 -0.0
3,824,185 - ECD_03635 0.11 -0.6
3,824,185 - ECD_03635 0.11 -1.0
3,824,209 + ECD_03635 0.12 +0.7
3,824,210 - ECD_03635 0.12 -0.9
3,824,210 - ECD_03635 0.12 +0.4
3,824,379 + ECD_03635 0.24 -0.7
3,824,379 + ECD_03635 0.24 -0.1
3,824,380 - ECD_03635 0.24 +0.3
3,824,394 - ECD_03635 0.25 +0.1
3,824,516 + ECD_03635 0.33 +0.3
3,824,517 - ECD_03635 0.33 -0.6
3,824,610 + ECD_03635 0.39 -0.1
3,824,610 + ECD_03635 0.39 +0.6
3,824,610 + ECD_03635 0.39 -0.3
3,824,610 + ECD_03635 0.39 -1.0
3,824,610 + ECD_03635 0.39 -0.4
3,824,611 - ECD_03635 0.39 -0.2
3,824,611 - ECD_03635 0.39 +0.3
3,824,611 - ECD_03635 0.39 -0.5
3,824,611 - ECD_03635 0.39 -0.3
3,824,611 - ECD_03635 0.39 +0.6
3,824,612 + ECD_03635 0.39 -1.0
3,824,612 + ECD_03635 0.39 +0.2
3,824,613 - ECD_03635 0.39 +0.5
3,824,613 - ECD_03635 0.39 -2.5
3,824,613 - ECD_03635 0.39 +0.3
3,824,682 - ECD_03635 0.44 -0.9
3,824,844 - ECD_03635 0.54 -1.7
3,824,848 + ECD_03635 0.55 +0.8
3,824,929 + ECD_03635 0.60 +0.4
3,824,947 - ECD_03635 0.61 +0.3
3,824,947 - ECD_03635 0.61 -0.4
3,825,015 + ECD_03635 0.66 +0.3
3,825,015 + ECD_03635 0.66 -0.2
3,825,015 + ECD_03635 0.66 +0.2
3,825,016 - ECD_03635 0.66 -0.9
3,825,016 - ECD_03635 0.66 -0.0
3,825,016 - ECD_03635 0.66 +0.1
3,825,016 - ECD_03635 0.66 -0.5
3,825,033 - ECD_03635 0.67 -0.6
3,825,046 + ECD_03635 0.68 -0.6
3,825,046 + ECD_03635 0.68 -0.6
3,825,046 + ECD_03635 0.68 +0.9
3,825,096 + ECD_03635 0.71 +0.8
3,825,301 + ECD_03635 0.85 +0.2
3,825,301 + ECD_03635 0.85 +0.0
3,825,327 + ECD_03635 0.86 -0.7
3,825,327 + ECD_03635 0.86 -0.2
3,825,327 + ECD_03635 0.86 +0.7
3,825,328 - ECD_03635 0.87 -0.6
3,825,398 - +0.3
3,825,398 - -0.3
3,825,400 + +0.3
3,825,401 - -0.2
3,825,509 + -0.6
3,825,509 + -0.0
3,825,566 - +0.1
3,825,666 + ECD_03636 0.14 +0.1
3,825,671 + ECD_03636 0.14 +0.1
3,825,678 + ECD_03636 0.15 -1.6
3,825,678 + ECD_03636 0.15 +0.6
3,825,708 + ECD_03636 0.18 -0.6
3,825,708 + ECD_03636 0.18 -0.3
3,825,755 + ECD_03636 0.23 -0.8
3,825,756 - ECD_03636 0.23 -0.3
3,825,762 - ECD_03636 0.23 +0.3
3,825,762 - ECD_03636 0.23 -0.4
3,825,801 + ECD_03636 0.28 -0.7
3,825,801 + ECD_03636 0.28 -0.2
3,825,801 + ECD_03636 0.28 -0.4
3,825,801 + ECD_03636 0.28 +0.2
3,825,802 - ECD_03636 0.28 -0.7
3,825,802 - ECD_03636 0.28 -0.4
3,825,942 - ECD_03636 0.42 +0.2
3,825,965 - ECD_03636 0.45 +0.3
3,825,966 + ECD_03636 0.45 -0.5
3,825,966 + ECD_03636 0.45 +0.0
3,826,096 + ECD_03636 0.58 -0.1
3,826,096 + ECD_03636 0.58 +0.4
3,826,096 + ECD_03636 0.58 -0.7
3,826,097 - ECD_03636 0.58 -0.5
3,826,097 - ECD_03636 0.58 -0.6
3,826,126 + ECD_03636 0.61 -1.4
3,826,127 - ECD_03636 0.61 -0.1
3,826,127 - ECD_03636 0.61 +0.2
3,826,133 - ECD_03636 0.62 +0.3
3,826,133 - ECD_03636 0.62 +0.4
3,826,133 - ECD_03636 0.62 +0.5
3,826,205 - ECD_03636 0.69 +0.2
3,826,291 + ECD_03636 0.78 +0.3
3,826,292 - ECD_03636 0.78 +0.9
3,826,382 + ECD_03636 0.88 -0.3
3,826,399 - ECD_03636 0.89 -0.9
3,826,432 + -1.0
3,826,432 + +0.1
3,826,482 - +0.2
3,826,482 - -0.8
3,826,502 - -0.8
3,826,524 + -0.3
3,826,524 + +0.8
3,826,524 + +0.4

Or see this region's nucleotide sequence