Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04284 and ECD_04285 overlap by 4 nucleotides ECD_04285 and ECD_03635 are separated by 286 nucleotides ECD_03635 and ECD_03636 are separated by 4 nucleotides ECD_03636 and ECD_03637 are separated by 24 nucleotides
ECD_04284: ECD_04284 - IS150 putative transposase, at 3,822,369 to 3,823,220
_04284
ECD_04285: ECD_04285 - IS150 hypothetical protein, at 3,823,217 to 3,823,738
_04285
ECD_03635: ECD_03635 - D-ribose ABC transporter ATPase, at 3,824,025 to 3,825,530
_03635
ECD_03636: ECD_03636 - D-ribose ABC transporter permease, at 3,825,535 to 3,826,500
_03636
ECD_03637: ECD_03637 - D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor, at 3,826,525 to 3,827,415
_03637
Position (kb)
3824
3825
3826 Strain fitness (log2 ratio)
-2
-1
0
1 at 3823.782 kb on + strand at 3823.825 kb on + strand at 3823.953 kb on + strand at 3823.980 kb on - strand at 3824.035 kb on + strand at 3824.035 kb on + strand at 3824.045 kb on + strand at 3824.098 kb on + strand at 3824.099 kb on - strand at 3824.099 kb on - strand at 3824.106 kb on + strand at 3824.180 kb on + strand, within ECD_03635 at 3824.180 kb on + strand, within ECD_03635 at 3824.180 kb on + strand, within ECD_03635 at 3824.184 kb on + strand, within ECD_03635 at 3824.184 kb on + strand, within ECD_03635 at 3824.184 kb on + strand, within ECD_03635 at 3824.184 kb on + strand, within ECD_03635 at 3824.184 kb on + strand, within ECD_03635 at 3824.185 kb on - strand, within ECD_03635 at 3824.185 kb on - strand, within ECD_03635 at 3824.185 kb on - strand, within ECD_03635 at 3824.185 kb on - strand, within ECD_03635 at 3824.209 kb on + strand, within ECD_03635 at 3824.210 kb on - strand, within ECD_03635 at 3824.210 kb on - strand, within ECD_03635 at 3824.379 kb on + strand, within ECD_03635 at 3824.379 kb on + strand, within ECD_03635 at 3824.380 kb on - strand, within ECD_03635 at 3824.394 kb on - strand, within ECD_03635 at 3824.516 kb on + strand, within ECD_03635 at 3824.517 kb on - strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.612 kb on + strand, within ECD_03635 at 3824.612 kb on + strand, within ECD_03635 at 3824.613 kb on - strand, within ECD_03635 at 3824.613 kb on - strand, within ECD_03635 at 3824.613 kb on - strand, within ECD_03635 at 3824.682 kb on - strand, within ECD_03635 at 3824.844 kb on - strand, within ECD_03635 at 3824.848 kb on + strand, within ECD_03635 at 3824.929 kb on + strand, within ECD_03635 at 3824.947 kb on - strand, within ECD_03635 at 3824.947 kb on - strand, within ECD_03635 at 3825.015 kb on + strand, within ECD_03635 at 3825.015 kb on + strand, within ECD_03635 at 3825.015 kb on + strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.033 kb on - strand, within ECD_03635 at 3825.046 kb on + strand, within ECD_03635 at 3825.046 kb on + strand, within ECD_03635 at 3825.046 kb on + strand, within ECD_03635 at 3825.096 kb on + strand, within ECD_03635 at 3825.301 kb on + strand, within ECD_03635 at 3825.301 kb on + strand, within ECD_03635 at 3825.327 kb on + strand, within ECD_03635 at 3825.327 kb on + strand, within ECD_03635 at 3825.327 kb on + strand, within ECD_03635 at 3825.328 kb on - strand, within ECD_03635 at 3825.398 kb on - strand at 3825.398 kb on - strand at 3825.400 kb on + strand at 3825.401 kb on - strand at 3825.509 kb on + strand at 3825.509 kb on + strand at 3825.566 kb on - strand at 3825.666 kb on + strand, within ECD_03636 at 3825.671 kb on + strand, within ECD_03636 at 3825.678 kb on + strand, within ECD_03636 at 3825.678 kb on + strand, within ECD_03636 at 3825.708 kb on + strand, within ECD_03636 at 3825.708 kb on + strand, within ECD_03636 at 3825.755 kb on + strand, within ECD_03636 at 3825.756 kb on - strand, within ECD_03636 at 3825.762 kb on - strand, within ECD_03636 at 3825.762 kb on - strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.802 kb on - strand, within ECD_03636 at 3825.802 kb on - strand, within ECD_03636 at 3825.942 kb on - strand, within ECD_03636 at 3825.965 kb on - strand, within ECD_03636 at 3825.966 kb on + strand, within ECD_03636 at 3825.966 kb on + strand, within ECD_03636 at 3826.096 kb on + strand, within ECD_03636 at 3826.096 kb on + strand, within ECD_03636 at 3826.096 kb on + strand, within ECD_03636 at 3826.097 kb on - strand, within ECD_03636 at 3826.097 kb on - strand, within ECD_03636 at 3826.126 kb on + strand, within ECD_03636 at 3826.127 kb on - strand, within ECD_03636 at 3826.127 kb on - strand, within ECD_03636 at 3826.133 kb on - strand, within ECD_03636 at 3826.133 kb on - strand, within ECD_03636 at 3826.133 kb on - strand, within ECD_03636 at 3826.205 kb on - strand, within ECD_03636 at 3826.291 kb on + strand, within ECD_03636 at 3826.292 kb on - strand, within ECD_03636 at 3826.382 kb on + strand, within ECD_03636 at 3826.399 kb on - strand, within ECD_03636 at 3826.432 kb on + strand at 3826.432 kb on + strand at 3826.482 kb on - strand at 3826.482 kb on - strand at 3826.502 kb on - strand at 3826.524 kb on + strand at 3826.524 kb on + strand at 3826.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,823,782 + +0.0 3,823,825 + +0.5 3,823,953 + +0.9 3,823,980 - +0.5 3,824,035 + +0.9 3,824,035 + +0.8 3,824,045 + -0.0 3,824,098 + +0.1 3,824,099 - +0.6 3,824,099 - -1.4 3,824,106 + -0.8 3,824,180 + ECD_03635 0.10 -0.2 3,824,180 + ECD_03635 0.10 -1.3 3,824,180 + ECD_03635 0.10 -0.4 3,824,184 + ECD_03635 0.11 +1.2 3,824,184 + ECD_03635 0.11 +0.4 3,824,184 + ECD_03635 0.11 -0.1 3,824,184 + ECD_03635 0.11 -0.9 3,824,184 + ECD_03635 0.11 +0.4 3,824,185 - ECD_03635 0.11 +0.3 3,824,185 - ECD_03635 0.11 -0.0 3,824,185 - ECD_03635 0.11 -0.6 3,824,185 - ECD_03635 0.11 -1.0 3,824,209 + ECD_03635 0.12 +0.7 3,824,210 - ECD_03635 0.12 -0.9 3,824,210 - ECD_03635 0.12 +0.4 3,824,379 + ECD_03635 0.24 -0.7 3,824,379 + ECD_03635 0.24 -0.1 3,824,380 - ECD_03635 0.24 +0.3 3,824,394 - ECD_03635 0.25 +0.1 3,824,516 + ECD_03635 0.33 +0.3 3,824,517 - ECD_03635 0.33 -0.6 3,824,610 + ECD_03635 0.39 -0.1 3,824,610 + ECD_03635 0.39 +0.6 3,824,610 + ECD_03635 0.39 -0.3 3,824,610 + ECD_03635 0.39 -1.0 3,824,610 + ECD_03635 0.39 -0.4 3,824,611 - ECD_03635 0.39 -0.2 3,824,611 - ECD_03635 0.39 +0.3 3,824,611 - ECD_03635 0.39 -0.5 3,824,611 - ECD_03635 0.39 -0.3 3,824,611 - ECD_03635 0.39 +0.6 3,824,612 + ECD_03635 0.39 -1.0 3,824,612 + ECD_03635 0.39 +0.2 3,824,613 - ECD_03635 0.39 +0.5 3,824,613 - ECD_03635 0.39 -2.5 3,824,613 - ECD_03635 0.39 +0.3 3,824,682 - ECD_03635 0.44 -0.9 3,824,844 - ECD_03635 0.54 -1.7 3,824,848 + ECD_03635 0.55 +0.8 3,824,929 + ECD_03635 0.60 +0.4 3,824,947 - ECD_03635 0.61 +0.3 3,824,947 - ECD_03635 0.61 -0.4 3,825,015 + ECD_03635 0.66 +0.3 3,825,015 + ECD_03635 0.66 -0.2 3,825,015 + ECD_03635 0.66 +0.2 3,825,016 - ECD_03635 0.66 -0.9 3,825,016 - ECD_03635 0.66 -0.0 3,825,016 - ECD_03635 0.66 +0.1 3,825,016 - ECD_03635 0.66 -0.5 3,825,033 - ECD_03635 0.67 -0.6 3,825,046 + ECD_03635 0.68 -0.6 3,825,046 + ECD_03635 0.68 -0.6 3,825,046 + ECD_03635 0.68 +0.9 3,825,096 + ECD_03635 0.71 +0.8 3,825,301 + ECD_03635 0.85 +0.2 3,825,301 + ECD_03635 0.85 +0.0 3,825,327 + ECD_03635 0.86 -0.7 3,825,327 + ECD_03635 0.86 -0.2 3,825,327 + ECD_03635 0.86 +0.7 3,825,328 - ECD_03635 0.87 -0.6 3,825,398 - +0.3 3,825,398 - -0.3 3,825,400 + +0.3 3,825,401 - -0.2 3,825,509 + -0.6 3,825,509 + -0.0 3,825,566 - +0.1 3,825,666 + ECD_03636 0.14 +0.1 3,825,671 + ECD_03636 0.14 +0.1 3,825,678 + ECD_03636 0.15 -1.6 3,825,678 + ECD_03636 0.15 +0.6 3,825,708 + ECD_03636 0.18 -0.6 3,825,708 + ECD_03636 0.18 -0.3 3,825,755 + ECD_03636 0.23 -0.8 3,825,756 - ECD_03636 0.23 -0.3 3,825,762 - ECD_03636 0.23 +0.3 3,825,762 - ECD_03636 0.23 -0.4 3,825,801 + ECD_03636 0.28 -0.7 3,825,801 + ECD_03636 0.28 -0.2 3,825,801 + ECD_03636 0.28 -0.4 3,825,801 + ECD_03636 0.28 +0.2 3,825,802 - ECD_03636 0.28 -0.7 3,825,802 - ECD_03636 0.28 -0.4 3,825,942 - ECD_03636 0.42 +0.2 3,825,965 - ECD_03636 0.45 +0.3 3,825,966 + ECD_03636 0.45 -0.5 3,825,966 + ECD_03636 0.45 +0.0 3,826,096 + ECD_03636 0.58 -0.1 3,826,096 + ECD_03636 0.58 +0.4 3,826,096 + ECD_03636 0.58 -0.7 3,826,097 - ECD_03636 0.58 -0.5 3,826,097 - ECD_03636 0.58 -0.6 3,826,126 + ECD_03636 0.61 -1.4 3,826,127 - ECD_03636 0.61 -0.1 3,826,127 - ECD_03636 0.61 +0.2 3,826,133 - ECD_03636 0.62 +0.3 3,826,133 - ECD_03636 0.62 +0.4 3,826,133 - ECD_03636 0.62 +0.5 3,826,205 - ECD_03636 0.69 +0.2 3,826,291 + ECD_03636 0.78 +0.3 3,826,292 - ECD_03636 0.78 +0.9 3,826,382 + ECD_03636 0.88 -0.3 3,826,399 - ECD_03636 0.89 -0.9 3,826,432 + -1.0 3,826,432 + +0.1 3,826,482 - +0.2 3,826,482 - -0.8 3,826,502 - -0.8 3,826,524 + -0.3 3,826,524 + +0.8 3,826,524 + +0.4
Or see this region's nucleotide sequence