Strain Fitness in Escherichia coli BL21 around ECD_03628

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03626 and ECD_03627 are separated by 89 nucleotidesECD_03627 and ECD_03628 are separated by 151 nucleotidesECD_03628 and ECD_03629 are separated by 4 nucleotides ECD_03626: ECD_03626 - FMN-binding protein MioC, at 3,814,813 to 3,815,256 _03626 ECD_03627: ECD_03627 - transcriptional activator of asnA; autorepressor, at 3,815,346 to 3,815,804 _03627 ECD_03628: ECD_03628 - asparagine synthetase A, at 3,815,956 to 3,816,948 _03628 ECD_03629: ECD_03629 - stimulator of RavA ATPase activity; von Willebrand factor domain protein, at 3,816,953 to 3,818,404 _03629 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -2 -1 0 1 2at 3814.974 kb on - strand, within ECD_03626at 3814.983 kb on + strand, within ECD_03626at 3815.049 kb on - strand, within ECD_03626at 3815.074 kb on - strand, within ECD_03626at 3815.126 kb on - strand, within ECD_03626at 3815.126 kb on - strand, within ECD_03626at 3815.204 kb on - strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.208 kb on - strand, within ECD_03626at 3815.208 kb on - strand, within ECD_03626at 3815.239 kb on - strandat 3815.247 kb on + strandat 3815.257 kb on - strandat 3815.257 kb on - strandat 3815.270 kb on + strandat 3815.271 kb on - strandat 3815.271 kb on - strandat 3815.273 kb on + strandat 3815.274 kb on - strandat 3815.284 kb on + strandat 3815.289 kb on + strandat 3815.289 kb on + strandat 3815.289 kb on + strandat 3815.361 kb on - strandat 3815.435 kb on + strand, within ECD_03627at 3815.435 kb on + strand, within ECD_03627at 3815.435 kb on + strand, within ECD_03627at 3815.436 kb on - strand, within ECD_03627at 3815.436 kb on - strand, within ECD_03627at 3815.439 kb on + strand, within ECD_03627at 3815.439 kb on + strand, within ECD_03627at 3815.440 kb on - strand, within ECD_03627at 3815.440 kb on - strand, within ECD_03627at 3815.440 kb on - strand, within ECD_03627at 3815.480 kb on + strand, within ECD_03627at 3815.480 kb on + strand, within ECD_03627at 3815.481 kb on - strand, within ECD_03627at 3815.509 kb on + strand, within ECD_03627at 3815.510 kb on - strand, within ECD_03627at 3815.510 kb on - strand, within ECD_03627at 3815.510 kb on - strand, within ECD_03627at 3815.561 kb on - strand, within ECD_03627at 3815.580 kb on + strand, within ECD_03627at 3815.580 kb on + strand, within ECD_03627at 3815.581 kb on - strand, within ECD_03627at 3815.581 kb on - strand, within ECD_03627at 3815.581 kb on - strand, within ECD_03627at 3815.582 kb on + strand, within ECD_03627at 3815.583 kb on - strand, within ECD_03627at 3815.583 kb on - strand, within ECD_03627at 3815.601 kb on + strand, within ECD_03627at 3815.602 kb on - strand, within ECD_03627at 3815.755 kb on - strand, within ECD_03627at 3815.755 kb on - strand, within ECD_03627at 3815.949 kb on - strandat 3815.968 kb on + strandat 3815.968 kb on + strandat 3815.991 kb on + strandat 3815.991 kb on + strandat 3815.991 kb on + strandat 3816.093 kb on + strand, within ECD_03628at 3816.197 kb on + strand, within ECD_03628at 3816.293 kb on - strand, within ECD_03628at 3816.320 kb on + strand, within ECD_03628at 3816.388 kb on - strand, within ECD_03628at 3816.458 kb on + strand, within ECD_03628at 3816.458 kb on + strand, within ECD_03628at 3816.473 kb on + strand, within ECD_03628at 3816.473 kb on + strand, within ECD_03628at 3816.543 kb on - strand, within ECD_03628at 3816.607 kb on + strand, within ECD_03628at 3816.660 kb on + strand, within ECD_03628at 3816.906 kb on - strandat 3816.906 kb on - strandat 3816.947 kb on - strandat 3816.947 kb on - strandat 3816.949 kb on + strandat 3816.949 kb on + strandat 3816.950 kb on - strandat 3817.010 kb on - strandat 3817.296 kb on + strand, within ECD_03629at 3817.324 kb on + strand, within ECD_03629at 3817.324 kb on + strand, within ECD_03629at 3817.324 kb on + strand, within ECD_03629at 3817.325 kb on - strand, within ECD_03629at 3817.325 kb on - strand, within ECD_03629at 3817.327 kb on + strand, within ECD_03629at 3817.327 kb on + strand, within ECD_03629at 3817.327 kb on + strand, within ECD_03629at 3817.327 kb on + strand, within ECD_03629at 3817.328 kb on - strand, within ECD_03629at 3817.328 kb on - strand, within ECD_03629at 3817.328 kb on - strand, within ECD_03629at 3817.328 kb on - strand, within ECD_03629at 3817.328 kb on - strand, within ECD_03629at 3817.329 kb on + strand, within ECD_03629at 3817.329 kb on + strand, within ECD_03629at 3817.329 kb on + strand, within ECD_03629at 3817.329 kb on + strand, within ECD_03629at 3817.329 kb on + strand, within ECD_03629at 3817.329 kb on + strand, within ECD_03629at 3817.330 kb on - strand, within ECD_03629at 3817.438 kb on + strand, within ECD_03629at 3817.464 kb on + strand, within ECD_03629at 3817.465 kb on - strand, within ECD_03629at 3817.471 kb on + strand, within ECD_03629at 3817.472 kb on - strand, within ECD_03629at 3817.475 kb on + strand, within ECD_03629at 3817.475 kb on + strand, within ECD_03629at 3817.475 kb on + strand, within ECD_03629at 3817.475 kb on + strand, within ECD_03629at 3817.476 kb on - strand, within ECD_03629at 3817.476 kb on - strand, within ECD_03629at 3817.476 kb on - strand, within ECD_03629at 3817.476 kb on - strand, within ECD_03629at 3817.528 kb on - strand, within ECD_03629at 3817.589 kb on + strand, within ECD_03629at 3817.590 kb on - strand, within ECD_03629at 3817.619 kb on + strand, within ECD_03629at 3817.624 kb on + strand, within ECD_03629at 3817.625 kb on - strand, within ECD_03629at 3817.819 kb on - strand, within ECD_03629at 3817.819 kb on - strand, within ECD_03629at 3817.849 kb on + strand, within ECD_03629at 3817.879 kb on + strand, within ECD_03629at 3817.880 kb on - strand, within ECD_03629at 3817.880 kb on - strand, within ECD_03629at 3817.937 kb on + strand, within ECD_03629at 3817.937 kb on + strand, within ECD_03629at 3817.937 kb on + strand, within ECD_03629at 3817.938 kb on - strand, within ECD_03629

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,814,974 - ECD_03626 0.36 -0.1
3,814,983 + ECD_03626 0.38 -1.3
3,815,049 - ECD_03626 0.53 +0.1
3,815,074 - ECD_03626 0.59 -0.7
3,815,126 - ECD_03626 0.70 -0.8
3,815,126 - ECD_03626 0.70 -0.6
3,815,204 - ECD_03626 0.88 -0.6
3,815,207 + ECD_03626 0.89 +0.0
3,815,207 + ECD_03626 0.89 -0.9
3,815,207 + ECD_03626 0.89 -1.9
3,815,207 + ECD_03626 0.89 -0.3
3,815,207 + ECD_03626 0.89 -1.3
3,815,208 - ECD_03626 0.89 -0.3
3,815,208 - ECD_03626 0.89 -0.0
3,815,239 - -0.9
3,815,247 + +0.0
3,815,257 - +0.2
3,815,257 - -0.3
3,815,270 + -0.6
3,815,271 - +0.0
3,815,271 - +0.6
3,815,273 + -1.3
3,815,274 - +0.2
3,815,284 + -0.0
3,815,289 + -0.4
3,815,289 + +0.0
3,815,289 + +0.1
3,815,361 - -0.5
3,815,435 + ECD_03627 0.19 +0.3
3,815,435 + ECD_03627 0.19 -0.3
3,815,435 + ECD_03627 0.19 -0.1
3,815,436 - ECD_03627 0.20 -0.4
3,815,436 - ECD_03627 0.20 +0.3
3,815,439 + ECD_03627 0.20 -0.1
3,815,439 + ECD_03627 0.20 +0.5
3,815,440 - ECD_03627 0.20 +0.4
3,815,440 - ECD_03627 0.20 -0.1
3,815,440 - ECD_03627 0.20 -0.6
3,815,480 + ECD_03627 0.29 -0.6
3,815,480 + ECD_03627 0.29 +0.2
3,815,481 - ECD_03627 0.29 -0.0
3,815,509 + ECD_03627 0.36 +1.1
3,815,510 - ECD_03627 0.36 +1.0
3,815,510 - ECD_03627 0.36 +2.5
3,815,510 - ECD_03627 0.36 +0.4
3,815,561 - ECD_03627 0.47 +0.1
3,815,580 + ECD_03627 0.51 +1.0
3,815,580 + ECD_03627 0.51 -0.0
3,815,581 - ECD_03627 0.51 -0.5
3,815,581 - ECD_03627 0.51 -0.1
3,815,581 - ECD_03627 0.51 +0.9
3,815,582 + ECD_03627 0.51 +0.5
3,815,583 - ECD_03627 0.52 -0.2
3,815,583 - ECD_03627 0.52 +0.4
3,815,601 + ECD_03627 0.56 +0.0
3,815,602 - ECD_03627 0.56 +0.1
3,815,755 - ECD_03627 0.89 +0.0
3,815,755 - ECD_03627 0.89 -0.7
3,815,949 - +0.4
3,815,968 + -1.0
3,815,968 + -0.2
3,815,991 + -0.0
3,815,991 + -1.3
3,815,991 + -0.2
3,816,093 + ECD_03628 0.14 +0.1
3,816,197 + ECD_03628 0.24 -0.5
3,816,293 - ECD_03628 0.34 +0.5
3,816,320 + ECD_03628 0.37 -0.6
3,816,388 - ECD_03628 0.44 +0.2
3,816,458 + ECD_03628 0.51 -0.5
3,816,458 + ECD_03628 0.51 +0.4
3,816,473 + ECD_03628 0.52 -0.3
3,816,473 + ECD_03628 0.52 +0.1
3,816,543 - ECD_03628 0.59 -0.1
3,816,607 + ECD_03628 0.66 -0.3
3,816,660 + ECD_03628 0.71 +0.3
3,816,906 - +0.4
3,816,906 - +0.8
3,816,947 - -0.1
3,816,947 - +0.1
3,816,949 + -0.0
3,816,949 + -0.3
3,816,950 - -1.3
3,817,010 - -0.0
3,817,296 + ECD_03629 0.24 -1.8
3,817,324 + ECD_03629 0.26 -0.3
3,817,324 + ECD_03629 0.26 -0.3
3,817,324 + ECD_03629 0.26 -1.3
3,817,325 - ECD_03629 0.26 +0.8
3,817,325 - ECD_03629 0.26 +0.1
3,817,327 + ECD_03629 0.26 -0.4
3,817,327 + ECD_03629 0.26 -0.1
3,817,327 + ECD_03629 0.26 +0.0
3,817,327 + ECD_03629 0.26 +0.3
3,817,328 - ECD_03629 0.26 -0.4
3,817,328 - ECD_03629 0.26 +0.0
3,817,328 - ECD_03629 0.26 -0.6
3,817,328 - ECD_03629 0.26 -0.1
3,817,328 - ECD_03629 0.26 -0.1
3,817,329 + ECD_03629 0.26 -0.0
3,817,329 + ECD_03629 0.26 -0.0
3,817,329 + ECD_03629 0.26 -0.1
3,817,329 + ECD_03629 0.26 -0.3
3,817,329 + ECD_03629 0.26 +0.0
3,817,329 + ECD_03629 0.26 -0.7
3,817,330 - ECD_03629 0.26 -0.2
3,817,438 + ECD_03629 0.33 +0.4
3,817,464 + ECD_03629 0.35 -0.3
3,817,465 - ECD_03629 0.35 -0.1
3,817,471 + ECD_03629 0.36 +0.1
3,817,472 - ECD_03629 0.36 -0.4
3,817,475 + ECD_03629 0.36 +0.4
3,817,475 + ECD_03629 0.36 +0.3
3,817,475 + ECD_03629 0.36 -0.5
3,817,475 + ECD_03629 0.36 -0.5
3,817,476 - ECD_03629 0.36 -0.5
3,817,476 - ECD_03629 0.36 -0.2
3,817,476 - ECD_03629 0.36 -0.2
3,817,476 - ECD_03629 0.36 -0.2
3,817,528 - ECD_03629 0.40 -0.1
3,817,589 + ECD_03629 0.44 -0.1
3,817,590 - ECD_03629 0.44 +0.5
3,817,619 + ECD_03629 0.46 +0.8
3,817,624 + ECD_03629 0.46 -0.0
3,817,625 - ECD_03629 0.46 -0.2
3,817,819 - ECD_03629 0.60 -0.1
3,817,819 - ECD_03629 0.60 -0.5
3,817,849 + ECD_03629 0.62 -0.0
3,817,879 + ECD_03629 0.64 +0.0
3,817,880 - ECD_03629 0.64 -0.9
3,817,880 - ECD_03629 0.64 +0.1
3,817,937 + ECD_03629 0.68 -0.0
3,817,937 + ECD_03629 0.68 -0.2
3,817,937 + ECD_03629 0.68 +0.4
3,817,938 - ECD_03629 0.68 +0.1

Or see this region's nucleotide sequence