Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03626 and ECD_03627 are separated by 89 nucleotides ECD_03627 and ECD_03628 are separated by 151 nucleotides ECD_03628 and ECD_03629 are separated by 4 nucleotides
ECD_03626: ECD_03626 - FMN-binding protein MioC, at 3,814,813 to 3,815,256
_03626
ECD_03627: ECD_03627 - transcriptional activator of asnA; autorepressor, at 3,815,346 to 3,815,804
_03627
ECD_03628: ECD_03628 - asparagine synthetase A, at 3,815,956 to 3,816,948
_03628
ECD_03629: ECD_03629 - stimulator of RavA ATPase activity; von Willebrand factor domain protein, at 3,816,953 to 3,818,404
_03629
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3814.974 kb on - strand, within ECD_03626 at 3814.983 kb on + strand, within ECD_03626 at 3815.049 kb on - strand, within ECD_03626 at 3815.074 kb on - strand, within ECD_03626 at 3815.126 kb on - strand, within ECD_03626 at 3815.126 kb on - strand, within ECD_03626 at 3815.204 kb on - strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.208 kb on - strand, within ECD_03626 at 3815.208 kb on - strand, within ECD_03626 at 3815.239 kb on - strand at 3815.247 kb on + strand at 3815.257 kb on - strand at 3815.257 kb on - strand at 3815.270 kb on + strand at 3815.271 kb on - strand at 3815.271 kb on - strand at 3815.273 kb on + strand at 3815.274 kb on - strand at 3815.284 kb on + strand at 3815.289 kb on + strand at 3815.289 kb on + strand at 3815.289 kb on + strand at 3815.361 kb on - strand at 3815.435 kb on + strand, within ECD_03627 at 3815.435 kb on + strand, within ECD_03627 at 3815.435 kb on + strand, within ECD_03627 at 3815.436 kb on - strand, within ECD_03627 at 3815.436 kb on - strand, within ECD_03627 at 3815.439 kb on + strand, within ECD_03627 at 3815.439 kb on + strand, within ECD_03627 at 3815.440 kb on - strand, within ECD_03627 at 3815.440 kb on - strand, within ECD_03627 at 3815.440 kb on - strand, within ECD_03627 at 3815.480 kb on + strand, within ECD_03627 at 3815.480 kb on + strand, within ECD_03627 at 3815.481 kb on - strand, within ECD_03627 at 3815.509 kb on + strand, within ECD_03627 at 3815.510 kb on - strand, within ECD_03627 at 3815.510 kb on - strand, within ECD_03627 at 3815.510 kb on - strand, within ECD_03627 at 3815.561 kb on - strand, within ECD_03627 at 3815.580 kb on + strand, within ECD_03627 at 3815.580 kb on + strand, within ECD_03627 at 3815.581 kb on - strand, within ECD_03627 at 3815.581 kb on - strand, within ECD_03627 at 3815.581 kb on - strand, within ECD_03627 at 3815.582 kb on + strand, within ECD_03627 at 3815.583 kb on - strand, within ECD_03627 at 3815.583 kb on - strand, within ECD_03627 at 3815.601 kb on + strand, within ECD_03627 at 3815.602 kb on - strand, within ECD_03627 at 3815.755 kb on - strand, within ECD_03627 at 3815.755 kb on - strand, within ECD_03627 at 3815.949 kb on - strand at 3815.968 kb on + strand at 3815.968 kb on + strand at 3815.991 kb on + strand at 3815.991 kb on + strand at 3815.991 kb on + strand at 3816.093 kb on + strand, within ECD_03628 at 3816.197 kb on + strand, within ECD_03628 at 3816.293 kb on - strand, within ECD_03628 at 3816.320 kb on + strand, within ECD_03628 at 3816.388 kb on - strand, within ECD_03628 at 3816.458 kb on + strand, within ECD_03628 at 3816.458 kb on + strand, within ECD_03628 at 3816.473 kb on + strand, within ECD_03628 at 3816.473 kb on + strand, within ECD_03628 at 3816.543 kb on - strand, within ECD_03628 at 3816.607 kb on + strand, within ECD_03628 at 3816.660 kb on + strand, within ECD_03628 at 3816.906 kb on - strand at 3816.906 kb on - strand at 3816.947 kb on - strand at 3816.947 kb on - strand at 3816.949 kb on + strand at 3816.949 kb on + strand at 3816.950 kb on - strand at 3817.010 kb on - strand at 3817.296 kb on + strand, within ECD_03629 at 3817.324 kb on + strand, within ECD_03629 at 3817.324 kb on + strand, within ECD_03629 at 3817.324 kb on + strand, within ECD_03629 at 3817.325 kb on - strand, within ECD_03629 at 3817.325 kb on - strand, within ECD_03629 at 3817.327 kb on + strand, within ECD_03629 at 3817.327 kb on + strand, within ECD_03629 at 3817.327 kb on + strand, within ECD_03629 at 3817.327 kb on + strand, within ECD_03629 at 3817.328 kb on - strand, within ECD_03629 at 3817.328 kb on - strand, within ECD_03629 at 3817.328 kb on - strand, within ECD_03629 at 3817.328 kb on - strand, within ECD_03629 at 3817.328 kb on - strand, within ECD_03629 at 3817.329 kb on + strand, within ECD_03629 at 3817.329 kb on + strand, within ECD_03629 at 3817.329 kb on + strand, within ECD_03629 at 3817.329 kb on + strand, within ECD_03629 at 3817.329 kb on + strand, within ECD_03629 at 3817.329 kb on + strand, within ECD_03629 at 3817.330 kb on - strand, within ECD_03629 at 3817.438 kb on + strand, within ECD_03629 at 3817.464 kb on + strand, within ECD_03629 at 3817.465 kb on - strand, within ECD_03629 at 3817.471 kb on + strand, within ECD_03629 at 3817.472 kb on - strand, within ECD_03629 at 3817.475 kb on + strand, within ECD_03629 at 3817.475 kb on + strand, within ECD_03629 at 3817.475 kb on + strand, within ECD_03629 at 3817.475 kb on + strand, within ECD_03629 at 3817.476 kb on - strand, within ECD_03629 at 3817.476 kb on - strand, within ECD_03629 at 3817.476 kb on - strand, within ECD_03629 at 3817.476 kb on - strand, within ECD_03629 at 3817.528 kb on - strand, within ECD_03629 at 3817.589 kb on + strand, within ECD_03629 at 3817.590 kb on - strand, within ECD_03629 at 3817.619 kb on + strand, within ECD_03629 at 3817.624 kb on + strand, within ECD_03629 at 3817.625 kb on - strand, within ECD_03629 at 3817.819 kb on - strand, within ECD_03629 at 3817.819 kb on - strand, within ECD_03629 at 3817.849 kb on + strand, within ECD_03629 at 3817.879 kb on + strand, within ECD_03629 at 3817.880 kb on - strand, within ECD_03629 at 3817.880 kb on - strand, within ECD_03629 at 3817.937 kb on + strand, within ECD_03629 at 3817.937 kb on + strand, within ECD_03629 at 3817.937 kb on + strand, within ECD_03629 at 3817.938 kb on - strand, within ECD_03629
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,814,974 - ECD_03626 0.36 -0.1 3,814,983 + ECD_03626 0.38 -1.3 3,815,049 - ECD_03626 0.53 +0.1 3,815,074 - ECD_03626 0.59 -0.7 3,815,126 - ECD_03626 0.70 -0.8 3,815,126 - ECD_03626 0.70 -0.6 3,815,204 - ECD_03626 0.88 -0.6 3,815,207 + ECD_03626 0.89 +0.0 3,815,207 + ECD_03626 0.89 -0.9 3,815,207 + ECD_03626 0.89 -1.9 3,815,207 + ECD_03626 0.89 -0.3 3,815,207 + ECD_03626 0.89 -1.3 3,815,208 - ECD_03626 0.89 -0.3 3,815,208 - ECD_03626 0.89 -0.0 3,815,239 - -0.9 3,815,247 + +0.0 3,815,257 - +0.2 3,815,257 - -0.3 3,815,270 + -0.6 3,815,271 - +0.0 3,815,271 - +0.6 3,815,273 + -1.3 3,815,274 - +0.2 3,815,284 + -0.0 3,815,289 + -0.4 3,815,289 + +0.0 3,815,289 + +0.1 3,815,361 - -0.5 3,815,435 + ECD_03627 0.19 +0.3 3,815,435 + ECD_03627 0.19 -0.3 3,815,435 + ECD_03627 0.19 -0.1 3,815,436 - ECD_03627 0.20 -0.4 3,815,436 - ECD_03627 0.20 +0.3 3,815,439 + ECD_03627 0.20 -0.1 3,815,439 + ECD_03627 0.20 +0.5 3,815,440 - ECD_03627 0.20 +0.4 3,815,440 - ECD_03627 0.20 -0.1 3,815,440 - ECD_03627 0.20 -0.6 3,815,480 + ECD_03627 0.29 -0.6 3,815,480 + ECD_03627 0.29 +0.2 3,815,481 - ECD_03627 0.29 -0.0 3,815,509 + ECD_03627 0.36 +1.1 3,815,510 - ECD_03627 0.36 +1.0 3,815,510 - ECD_03627 0.36 +2.5 3,815,510 - ECD_03627 0.36 +0.4 3,815,561 - ECD_03627 0.47 +0.1 3,815,580 + ECD_03627 0.51 +1.0 3,815,580 + ECD_03627 0.51 -0.0 3,815,581 - ECD_03627 0.51 -0.5 3,815,581 - ECD_03627 0.51 -0.1 3,815,581 - ECD_03627 0.51 +0.9 3,815,582 + ECD_03627 0.51 +0.5 3,815,583 - ECD_03627 0.52 -0.2 3,815,583 - ECD_03627 0.52 +0.4 3,815,601 + ECD_03627 0.56 +0.0 3,815,602 - ECD_03627 0.56 +0.1 3,815,755 - ECD_03627 0.89 +0.0 3,815,755 - ECD_03627 0.89 -0.7 3,815,949 - +0.4 3,815,968 + -1.0 3,815,968 + -0.2 3,815,991 + -0.0 3,815,991 + -1.3 3,815,991 + -0.2 3,816,093 + ECD_03628 0.14 +0.1 3,816,197 + ECD_03628 0.24 -0.5 3,816,293 - ECD_03628 0.34 +0.5 3,816,320 + ECD_03628 0.37 -0.6 3,816,388 - ECD_03628 0.44 +0.2 3,816,458 + ECD_03628 0.51 -0.5 3,816,458 + ECD_03628 0.51 +0.4 3,816,473 + ECD_03628 0.52 -0.3 3,816,473 + ECD_03628 0.52 +0.1 3,816,543 - ECD_03628 0.59 -0.1 3,816,607 + ECD_03628 0.66 -0.3 3,816,660 + ECD_03628 0.71 +0.3 3,816,906 - +0.4 3,816,906 - +0.8 3,816,947 - -0.1 3,816,947 - +0.1 3,816,949 + -0.0 3,816,949 + -0.3 3,816,950 - -1.3 3,817,010 - -0.0 3,817,296 + ECD_03629 0.24 -1.8 3,817,324 + ECD_03629 0.26 -0.3 3,817,324 + ECD_03629 0.26 -0.3 3,817,324 + ECD_03629 0.26 -1.3 3,817,325 - ECD_03629 0.26 +0.8 3,817,325 - ECD_03629 0.26 +0.1 3,817,327 + ECD_03629 0.26 -0.4 3,817,327 + ECD_03629 0.26 -0.1 3,817,327 + ECD_03629 0.26 +0.0 3,817,327 + ECD_03629 0.26 +0.3 3,817,328 - ECD_03629 0.26 -0.4 3,817,328 - ECD_03629 0.26 +0.0 3,817,328 - ECD_03629 0.26 -0.6 3,817,328 - ECD_03629 0.26 -0.1 3,817,328 - ECD_03629 0.26 -0.1 3,817,329 + ECD_03629 0.26 -0.0 3,817,329 + ECD_03629 0.26 -0.0 3,817,329 + ECD_03629 0.26 -0.1 3,817,329 + ECD_03629 0.26 -0.3 3,817,329 + ECD_03629 0.26 +0.0 3,817,329 + ECD_03629 0.26 -0.7 3,817,330 - ECD_03629 0.26 -0.2 3,817,438 + ECD_03629 0.33 +0.4 3,817,464 + ECD_03629 0.35 -0.3 3,817,465 - ECD_03629 0.35 -0.1 3,817,471 + ECD_03629 0.36 +0.1 3,817,472 - ECD_03629 0.36 -0.4 3,817,475 + ECD_03629 0.36 +0.4 3,817,475 + ECD_03629 0.36 +0.3 3,817,475 + ECD_03629 0.36 -0.5 3,817,475 + ECD_03629 0.36 -0.5 3,817,476 - ECD_03629 0.36 -0.5 3,817,476 - ECD_03629 0.36 -0.2 3,817,476 - ECD_03629 0.36 -0.2 3,817,476 - ECD_03629 0.36 -0.2 3,817,528 - ECD_03629 0.40 -0.1 3,817,589 + ECD_03629 0.44 -0.1 3,817,590 - ECD_03629 0.44 +0.5 3,817,619 + ECD_03629 0.46 +0.8 3,817,624 + ECD_03629 0.46 -0.0 3,817,625 - ECD_03629 0.46 -0.2 3,817,819 - ECD_03629 0.60 -0.1 3,817,819 - ECD_03629 0.60 -0.5 3,817,849 + ECD_03629 0.62 -0.0 3,817,879 + ECD_03629 0.64 +0.0 3,817,880 - ECD_03629 0.64 -0.9 3,817,880 - ECD_03629 0.64 +0.1 3,817,937 + ECD_03629 0.68 -0.0 3,817,937 + ECD_03629 0.68 -0.2 3,817,937 + ECD_03629 0.68 +0.4 3,817,938 - ECD_03629 0.68 +0.1
Or see this region's nucleotide sequence