Strain Fitness in Escherichia coli BL21 around ECD_03580

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03578 and ECD_03579 are separated by 277 nucleotidesECD_03579 and ECD_03580 are separated by 45 nucleotidesECD_03580 and ECD_03581 are separated by 114 nucleotidesECD_03581 and ECD_03582 are separated by 239 nucleotides ECD_03578: ECD_03578 - D-galactonate catabolism operon transcriptional repressor, at 3,763,267 to 3,763,956 _03578 ECD_03579: ECD_03579 - putative lipoprotein, at 3,764,234 to 3,764,890 _03579 ECD_03580: ECD_03580 - sugar phosphate phosphatase, at 3,764,936 to 3,765,748 _03580 ECD_03581: ECD_03581 - DUF937 family protein, at 3,765,863 to 3,766,261 _03581 ECD_03582: ECD_03582 - DNA gyrase, subunit B, at 3,766,501 to 3,768,915 _03582 Position (kb) 3764 3765 3766Strain fitness (log2 ratio) -1 0 1 2at 3763.944 kb on + strandat 3763.945 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3764.009 kb on + strandat 3764.194 kb on - strandat 3764.209 kb on + strandat 3764.210 kb on - strandat 3764.214 kb on - strandat 3764.229 kb on + strandat 3764.274 kb on + strandat 3764.313 kb on - strand, within ECD_03579at 3764.401 kb on + strand, within ECD_03579at 3764.402 kb on - strand, within ECD_03579at 3764.402 kb on - strand, within ECD_03579at 3764.405 kb on - strand, within ECD_03579at 3764.447 kb on + strand, within ECD_03579at 3764.448 kb on - strand, within ECD_03579at 3764.491 kb on + strand, within ECD_03579at 3764.492 kb on - strand, within ECD_03579at 3764.504 kb on - strand, within ECD_03579at 3764.548 kb on - strand, within ECD_03579at 3764.589 kb on - strand, within ECD_03579at 3764.589 kb on - strand, within ECD_03579at 3764.591 kb on + strand, within ECD_03579at 3764.591 kb on + strand, within ECD_03579at 3764.591 kb on + strand, within ECD_03579at 3764.594 kb on + strand, within ECD_03579at 3764.603 kb on - strand, within ECD_03579at 3764.633 kb on + strand, within ECD_03579at 3764.633 kb on + strand, within ECD_03579at 3764.663 kb on - strand, within ECD_03579at 3764.663 kb on - strand, within ECD_03579at 3764.683 kb on - strand, within ECD_03579at 3764.741 kb on + strand, within ECD_03579at 3764.742 kb on - strand, within ECD_03579at 3764.752 kb on + strand, within ECD_03579at 3764.752 kb on + strand, within ECD_03579at 3764.753 kb on - strand, within ECD_03579at 3764.766 kb on - strand, within ECD_03579at 3764.771 kb on + strand, within ECD_03579at 3764.771 kb on + strand, within ECD_03579at 3764.771 kb on + strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.772 kb on - strand, within ECD_03579at 3764.774 kb on + strand, within ECD_03579at 3764.775 kb on - strand, within ECD_03579at 3764.775 kb on - strand, within ECD_03579at 3764.775 kb on - strand, within ECD_03579at 3764.814 kb on + strand, within ECD_03579at 3764.845 kb on + strandat 3764.846 kb on - strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.871 kb on + strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.872 kb on - strandat 3764.873 kb on + strandat 3764.873 kb on + strandat 3764.874 kb on - strandat 3764.880 kb on + strandat 3764.889 kb on - strandat 3764.938 kb on - strandat 3764.938 kb on - strandat 3764.938 kb on - strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.949 kb on + strandat 3764.950 kb on - strandat 3764.950 kb on - strandat 3764.950 kb on - strandat 3764.987 kb on - strandat 3765.029 kb on - strand, within ECD_03580at 3765.060 kb on + strand, within ECD_03580at 3765.060 kb on + strand, within ECD_03580at 3765.061 kb on - strand, within ECD_03580at 3765.122 kb on - strand, within ECD_03580at 3765.125 kb on + strand, within ECD_03580at 3765.125 kb on + strand, within ECD_03580at 3765.125 kb on + strand, within ECD_03580at 3765.126 kb on - strand, within ECD_03580at 3765.126 kb on - strand, within ECD_03580at 3765.126 kb on - strand, within ECD_03580at 3765.193 kb on - strand, within ECD_03580at 3765.214 kb on + strand, within ECD_03580at 3765.215 kb on - strand, within ECD_03580at 3765.216 kb on + strand, within ECD_03580at 3765.217 kb on - strand, within ECD_03580at 3765.217 kb on - strand, within ECD_03580at 3765.217 kb on - strand, within ECD_03580at 3765.375 kb on + strand, within ECD_03580at 3765.375 kb on + strand, within ECD_03580at 3765.375 kb on + strand, within ECD_03580at 3765.376 kb on - strand, within ECD_03580at 3765.385 kb on + strand, within ECD_03580at 3765.481 kb on - strand, within ECD_03580at 3765.481 kb on - strand, within ECD_03580at 3765.509 kb on - strand, within ECD_03580at 3765.509 kb on - strand, within ECD_03580at 3765.509 kb on - strand, within ECD_03580at 3765.527 kb on + strand, within ECD_03580at 3765.543 kb on + strand, within ECD_03580at 3765.543 kb on + strand, within ECD_03580at 3765.544 kb on - strand, within ECD_03580at 3765.544 kb on - strand, within ECD_03580at 3765.544 kb on - strand, within ECD_03580at 3765.547 kb on + strand, within ECD_03580at 3765.547 kb on + strand, within ECD_03580at 3765.547 kb on + strand, within ECD_03580at 3765.547 kb on + strand, within ECD_03580at 3765.547 kb on + strand, within ECD_03580at 3765.547 kb on + strand, within ECD_03580at 3765.548 kb on - strand, within ECD_03580at 3765.548 kb on - strand, within ECD_03580at 3765.548 kb on - strand, within ECD_03580at 3765.548 kb on - strand, within ECD_03580at 3765.548 kb on - strand, within ECD_03580at 3765.548 kb on - strand, within ECD_03580at 3765.574 kb on + strand, within ECD_03580at 3765.575 kb on - strand, within ECD_03580at 3765.591 kb on + strand, within ECD_03580at 3765.591 kb on + strand, within ECD_03580at 3765.591 kb on + strand, within ECD_03580at 3765.727 kb on + strandat 3765.740 kb on - strandat 3765.740 kb on - strandat 3765.743 kb on - strandat 3765.761 kb on + strandat 3765.761 kb on + strandat 3765.761 kb on + strandat 3765.762 kb on - strandat 3765.961 kb on + strand, within ECD_03581at 3765.962 kb on - strand, within ECD_03581at 3765.987 kb on - strand, within ECD_03581at 3766.193 kb on + strand, within ECD_03581at 3766.198 kb on + strand, within ECD_03581at 3766.207 kb on - strand, within ECD_03581at 3766.302 kb on - strandat 3766.371 kb on + strandat 3766.468 kb on - strandat 3766.502 kb on + strandat 3766.503 kb on - strandat 3766.503 kb on - strandat 3766.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,763,944 + -0.4
3,763,945 - -0.9
3,763,977 - +0.3
3,763,977 - -0.1
3,763,977 - -0.2
3,763,977 - -0.1
3,763,988 + +1.3
3,763,988 + +0.1
3,763,988 + -0.3
3,763,988 + -0.3
3,764,009 + +0.4
3,764,194 - -0.2
3,764,209 + +0.5
3,764,210 - +0.2
3,764,214 - +0.3
3,764,229 + -0.6
3,764,274 + -0.1
3,764,313 - ECD_03579 0.12 +0.4
3,764,401 + ECD_03579 0.25 +0.2
3,764,402 - ECD_03579 0.26 -0.4
3,764,402 - ECD_03579 0.26 +0.8
3,764,405 - ECD_03579 0.26 +0.1
3,764,447 + ECD_03579 0.32 -0.9
3,764,448 - ECD_03579 0.33 -0.9
3,764,491 + ECD_03579 0.39 -0.3
3,764,492 - ECD_03579 0.39 +0.4
3,764,504 - ECD_03579 0.41 -0.2
3,764,548 - ECD_03579 0.48 +0.9
3,764,589 - ECD_03579 0.54 -0.0
3,764,589 - ECD_03579 0.54 +0.1
3,764,591 + ECD_03579 0.54 +0.0
3,764,591 + ECD_03579 0.54 -0.4
3,764,591 + ECD_03579 0.54 -1.1
3,764,594 + ECD_03579 0.55 -0.3
3,764,603 - ECD_03579 0.56 +0.2
3,764,633 + ECD_03579 0.61 -0.4
3,764,633 + ECD_03579 0.61 -0.3
3,764,663 - ECD_03579 0.65 +0.1
3,764,663 - ECD_03579 0.65 -0.3
3,764,683 - ECD_03579 0.68 -1.2
3,764,741 + ECD_03579 0.77 -0.2
3,764,742 - ECD_03579 0.77 +0.0
3,764,752 + ECD_03579 0.79 -1.7
3,764,752 + ECD_03579 0.79 +0.7
3,764,753 - ECD_03579 0.79 -0.0
3,764,766 - ECD_03579 0.81 +0.3
3,764,771 + ECD_03579 0.82 -0.2
3,764,771 + ECD_03579 0.82 -0.3
3,764,771 + ECD_03579 0.82 -0.1
3,764,772 - ECD_03579 0.82 +0.4
3,764,772 - ECD_03579 0.82 -0.3
3,764,772 - ECD_03579 0.82 +0.1
3,764,772 - ECD_03579 0.82 -0.2
3,764,774 + ECD_03579 0.82 +0.4
3,764,775 - ECD_03579 0.82 -0.6
3,764,775 - ECD_03579 0.82 -0.3
3,764,775 - ECD_03579 0.82 +0.1
3,764,814 + ECD_03579 0.88 -0.1
3,764,845 + +0.0
3,764,846 - +0.8
3,764,871 + -0.2
3,764,871 + -0.2
3,764,871 + -0.5
3,764,871 + +0.2
3,764,871 + -0.4
3,764,871 + +0.5
3,764,872 - +0.3
3,764,872 - -0.1
3,764,872 - -0.9
3,764,872 - +0.0
3,764,872 - +0.3
3,764,873 + +0.5
3,764,873 + +0.2
3,764,874 - -1.2
3,764,880 + +0.0
3,764,889 - -0.2
3,764,938 - -0.8
3,764,938 - -0.0
3,764,938 - -0.3
3,764,949 + -0.3
3,764,949 + -0.2
3,764,949 + -0.9
3,764,949 + -1.3
3,764,949 + +0.4
3,764,950 - -0.0
3,764,950 - +0.0
3,764,950 - -0.3
3,764,987 - +1.5
3,765,029 - ECD_03580 0.11 -0.4
3,765,060 + ECD_03580 0.15 +0.4
3,765,060 + ECD_03580 0.15 -0.9
3,765,061 - ECD_03580 0.15 +2.0
3,765,122 - ECD_03580 0.23 -0.5
3,765,125 + ECD_03580 0.23 -0.8
3,765,125 + ECD_03580 0.23 -0.2
3,765,125 + ECD_03580 0.23 -0.1
3,765,126 - ECD_03580 0.23 -0.0
3,765,126 - ECD_03580 0.23 -0.1
3,765,126 - ECD_03580 0.23 -0.5
3,765,193 - ECD_03580 0.32 -0.4
3,765,214 + ECD_03580 0.34 -0.1
3,765,215 - ECD_03580 0.34 -0.6
3,765,216 + ECD_03580 0.34 +0.3
3,765,217 - ECD_03580 0.35 -0.8
3,765,217 - ECD_03580 0.35 -0.4
3,765,217 - ECD_03580 0.35 +0.0
3,765,375 + ECD_03580 0.54 -1.6
3,765,375 + ECD_03580 0.54 -1.1
3,765,375 + ECD_03580 0.54 -0.5
3,765,376 - ECD_03580 0.54 +0.0
3,765,385 + ECD_03580 0.55 -1.2
3,765,481 - ECD_03580 0.67 -0.2
3,765,481 - ECD_03580 0.67 +0.1
3,765,509 - ECD_03580 0.70 -0.9
3,765,509 - ECD_03580 0.70 -0.3
3,765,509 - ECD_03580 0.70 -0.1
3,765,527 + ECD_03580 0.73 -0.6
3,765,543 + ECD_03580 0.75 -0.2
3,765,543 + ECD_03580 0.75 -0.0
3,765,544 - ECD_03580 0.75 -0.1
3,765,544 - ECD_03580 0.75 -0.4
3,765,544 - ECD_03580 0.75 -0.8
3,765,547 + ECD_03580 0.75 -0.2
3,765,547 + ECD_03580 0.75 -0.3
3,765,547 + ECD_03580 0.75 -1.5
3,765,547 + ECD_03580 0.75 +0.4
3,765,547 + ECD_03580 0.75 +0.3
3,765,547 + ECD_03580 0.75 -0.2
3,765,548 - ECD_03580 0.75 -0.4
3,765,548 - ECD_03580 0.75 -0.4
3,765,548 - ECD_03580 0.75 +0.1
3,765,548 - ECD_03580 0.75 +0.5
3,765,548 - ECD_03580 0.75 -0.6
3,765,548 - ECD_03580 0.75 -0.2
3,765,574 + ECD_03580 0.78 -0.9
3,765,575 - ECD_03580 0.79 +0.6
3,765,591 + ECD_03580 0.81 +0.6
3,765,591 + ECD_03580 0.81 +0.0
3,765,591 + ECD_03580 0.81 -0.1
3,765,727 + +0.1
3,765,740 - +0.8
3,765,740 - -0.2
3,765,743 - -0.8
3,765,761 + -0.4
3,765,761 + +0.0
3,765,761 + +1.2
3,765,762 - +0.2
3,765,961 + ECD_03581 0.25 +0.3
3,765,962 - ECD_03581 0.25 -0.5
3,765,987 - ECD_03581 0.31 +1.3
3,766,193 + ECD_03581 0.83 -0.0
3,766,198 + ECD_03581 0.84 +0.1
3,766,207 - ECD_03581 0.86 +0.3
3,766,302 - +0.8
3,766,371 + -0.8
3,766,468 - +0.1
3,766,502 + -0.3
3,766,503 - +0.3
3,766,503 - -0.0
3,766,507 - -0.4

Or see this region's nucleotide sequence