Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03420 and ECD_03421 are separated by 77 nucleotides ECD_03421 and ECD_03422 are separated by 195 nucleotides
ECD_03420: ECD_03420 - D-xylose ABC transporter permease, at 3,595,872 to 3,597,053
_03420
ECD_03421: ECD_03421 - xylose divergent operon transcriptional activator, at 3,597,131 to 3,598,309
_03421
ECD_03422: ECD_03422 - putative glucosaminidase, at 3,598,505 to 3,599,329
_03422
Position (kb)
3597
3598
3599 Strain fitness (log2 ratio)
-2
-1
0
1 at 3596.149 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.153 kb on - strand, within ECD_03420 at 3596.153 kb on - strand, within ECD_03420 at 3596.153 kb on - strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.206 kb on - strand, within ECD_03420 at 3596.289 kb on - strand, within ECD_03420 at 3596.289 kb on - strand, within ECD_03420 at 3596.327 kb on - strand, within ECD_03420 at 3596.327 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.402 kb on - strand, within ECD_03420 at 3596.514 kb on - strand, within ECD_03420 at 3596.514 kb on - strand, within ECD_03420 at 3596.514 kb on - strand, within ECD_03420 at 3596.521 kb on + strand, within ECD_03420 at 3596.554 kb on + strand, within ECD_03420 at 3596.554 kb on + strand, within ECD_03420 at 3596.555 kb on - strand, within ECD_03420 at 3596.676 kb on + strand, within ECD_03420 at 3596.676 kb on + strand, within ECD_03420 at 3596.792 kb on + strand, within ECD_03420 at 3596.914 kb on + strand, within ECD_03420 at 3596.915 kb on - strand, within ECD_03420 at 3596.927 kb on + strand, within ECD_03420 at 3596.928 kb on - strand, within ECD_03420 at 3596.928 kb on - strand, within ECD_03420 at 3596.957 kb on + strand at 3596.957 kb on + strand at 3596.957 kb on + strand at 3596.958 kb on - strand at 3596.958 kb on - strand at 3596.958 kb on - strand at 3596.969 kb on - strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.986 kb on - strand at 3596.986 kb on - strand at 3596.987 kb on + strand at 3597.020 kb on - strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.087 kb on - strand at 3597.159 kb on + strand at 3597.160 kb on - strand at 3597.182 kb on + strand at 3597.182 kb on + strand at 3597.183 kb on - strand at 3597.183 kb on - strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.199 kb on - strand at 3597.199 kb on - strand at 3597.199 kb on - strand at 3597.199 kb on - strand at 3597.216 kb on - strand at 3597.219 kb on + strand at 3597.245 kb on - strand at 3597.389 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.423 kb on - strand, within ECD_03421 at 3597.437 kb on - strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.472 kb on - strand, within ECD_03421 at 3597.503 kb on + strand, within ECD_03421 at 3597.551 kb on + strand, within ECD_03421 at 3597.663 kb on + strand, within ECD_03421 at 3597.663 kb on + strand, within ECD_03421 at 3597.691 kb on + strand, within ECD_03421 at 3597.721 kb on + strand, within ECD_03421 at 3597.721 kb on + strand, within ECD_03421 at 3597.721 kb on + strand, within ECD_03421 at 3597.722 kb on - strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.748 kb on + strand, within ECD_03421 at 3597.748 kb on + strand, within ECD_03421 at 3597.748 kb on + strand, within ECD_03421 at 3597.749 kb on - strand, within ECD_03421 at 3597.888 kb on + strand, within ECD_03421 at 3597.891 kb on + strand, within ECD_03421 at 3597.891 kb on + strand, within ECD_03421 at 3597.892 kb on - strand, within ECD_03421 at 3597.895 kb on + strand, within ECD_03421 at 3597.895 kb on + strand, within ECD_03421 at 3597.896 kb on - strand, within ECD_03421 at 3598.007 kb on + strand, within ECD_03421 at 3598.007 kb on + strand, within ECD_03421 at 3598.008 kb on - strand, within ECD_03421 at 3598.016 kb on - strand, within ECD_03421 at 3598.036 kb on + strand, within ECD_03421 at 3598.050 kb on + strand, within ECD_03421 at 3598.097 kb on - strand, within ECD_03421 at 3598.256 kb on + strand at 3598.256 kb on + strand at 3598.287 kb on + strand at 3598.291 kb on + strand at 3598.291 kb on + strand at 3598.291 kb on + strand at 3598.291 kb on + strand at 3598.291 kb on + strand at 3598.291 kb on + strand at 3598.308 kb on - strand at 3598.403 kb on + strand at 3598.403 kb on + strand at 3598.404 kb on - strand at 3598.433 kb on - strand at 3598.456 kb on - strand at 3598.485 kb on + strand at 3598.506 kb on + strand at 3598.506 kb on + strand at 3598.506 kb on + strand at 3598.506 kb on + strand at 3598.506 kb on + strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.507 kb on - strand at 3598.510 kb on + strand at 3598.510 kb on + strand at 3598.511 kb on - strand at 3598.511 kb on - strand at 3598.511 kb on - strand at 3598.542 kb on + strand at 3598.543 kb on - strand at 3598.557 kb on + strand at 3598.557 kb on + strand at 3598.558 kb on - strand at 3598.558 kb on - strand at 3598.558 kb on - strand at 3598.564 kb on + strand at 3598.565 kb on - strand at 3598.565 kb on - strand at 3598.566 kb on + strand at 3598.566 kb on + strand at 3598.566 kb on + strand at 3598.567 kb on - strand at 3598.639 kb on + strand, within ECD_03422 at 3598.688 kb on - strand, within ECD_03422 at 3598.688 kb on - strand, within ECD_03422 at 3598.704 kb on + strand, within ECD_03422 at 3598.705 kb on - strand, within ECD_03422 at 3598.705 kb on - strand, within ECD_03422 at 3598.732 kb on + strand, within ECD_03422 at 3598.732 kb on + strand, within ECD_03422 at 3598.756 kb on + strand, within ECD_03422 at 3598.771 kb on + strand, within ECD_03422 at 3598.772 kb on - strand, within ECD_03422 at 3598.873 kb on + strand, within ECD_03422 at 3598.910 kb on - strand, within ECD_03422 at 3598.930 kb on + strand, within ECD_03422 at 3598.930 kb on + strand, within ECD_03422 at 3598.934 kb on - strand, within ECD_03422 at 3598.953 kb on + strand, within ECD_03422 at 3598.954 kb on - strand, within ECD_03422 at 3599.066 kb on - strand, within ECD_03422 at 3599.070 kb on + strand, within ECD_03422 at 3599.071 kb on - strand, within ECD_03422 at 3599.078 kb on + strand, within ECD_03422 at 3599.121 kb on + strand, within ECD_03422 at 3599.122 kb on - strand, within ECD_03422 at 3599.146 kb on + strand, within ECD_03422 at 3599.147 kb on - strand, within ECD_03422 at 3599.170 kb on - strand, within ECD_03422 at 3599.187 kb on - strand, within ECD_03422 at 3599.187 kb on - strand, within ECD_03422 at 3599.198 kb on - strand, within ECD_03422 at 3599.198 kb on - strand, within ECD_03422 at 3599.198 kb on - strand, within ECD_03422 at 3599.200 kb on + strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.206 kb on + strand, within ECD_03422 at 3599.206 kb on + strand, within ECD_03422 at 3599.282 kb on + strand at 3599.283 kb on - strand at 3599.287 kb on + strand at 3599.287 kb on + strand at 3599.288 kb on - strand at 3599.288 kb on - strand at 3599.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,596,149 + ECD_03420 0.23 -2.0 3,596,152 + ECD_03420 0.24 -0.3 3,596,152 + ECD_03420 0.24 -0.2 3,596,152 + ECD_03420 0.24 -0.0 3,596,152 + ECD_03420 0.24 +0.1 3,596,153 - ECD_03420 0.24 -0.5 3,596,153 - ECD_03420 0.24 +0.2 3,596,153 - ECD_03420 0.24 +0.2 3,596,204 + ECD_03420 0.28 -1.5 3,596,204 + ECD_03420 0.28 -2.3 3,596,204 + ECD_03420 0.28 +0.4 3,596,204 + ECD_03420 0.28 +0.4 3,596,204 + ECD_03420 0.28 -0.0 3,596,205 - ECD_03420 0.28 -1.0 3,596,205 - ECD_03420 0.28 -1.4 3,596,205 - ECD_03420 0.28 -0.1 3,596,205 - ECD_03420 0.28 -0.5 3,596,205 - ECD_03420 0.28 -0.6 3,596,205 - ECD_03420 0.28 +1.4 3,596,205 - ECD_03420 0.28 -0.4 3,596,206 - ECD_03420 0.28 +0.3 3,596,289 - ECD_03420 0.35 -0.7 3,596,289 - ECD_03420 0.35 -0.7 3,596,327 - ECD_03420 0.38 -0.3 3,596,327 - ECD_03420 0.38 +0.1 3,596,398 - ECD_03420 0.45 -0.9 3,596,398 - ECD_03420 0.45 +0.6 3,596,398 - ECD_03420 0.45 -0.4 3,596,398 - ECD_03420 0.45 +0.3 3,596,398 - ECD_03420 0.45 -0.1 3,596,398 - ECD_03420 0.45 +0.3 3,596,398 - ECD_03420 0.45 +0.6 3,596,402 - ECD_03420 0.45 +0.5 3,596,514 - ECD_03420 0.54 -0.2 3,596,514 - ECD_03420 0.54 +0.4 3,596,514 - ECD_03420 0.54 +0.3 3,596,521 + ECD_03420 0.55 +0.2 3,596,554 + ECD_03420 0.58 -0.4 3,596,554 + ECD_03420 0.58 -0.2 3,596,555 - ECD_03420 0.58 +0.3 3,596,676 + ECD_03420 0.68 +0.3 3,596,676 + ECD_03420 0.68 -0.3 3,596,792 + ECD_03420 0.78 +0.0 3,596,914 + ECD_03420 0.88 +0.5 3,596,915 - ECD_03420 0.88 -0.5 3,596,927 + ECD_03420 0.89 +0.8 3,596,928 - ECD_03420 0.89 -0.3 3,596,928 - ECD_03420 0.89 -0.0 3,596,957 + -1.1 3,596,957 + +0.3 3,596,957 + +0.2 3,596,958 - -1.2 3,596,958 - +0.2 3,596,958 - +0.5 3,596,969 - -0.7 3,596,985 + +0.6 3,596,985 + -0.6 3,596,985 + -0.2 3,596,985 + +0.1 3,596,985 + -0.6 3,596,985 + -0.4 3,596,986 - -0.6 3,596,986 - +0.1 3,596,987 + +0.0 3,597,020 - +0.2 3,597,086 + -1.0 3,597,086 + +0.3 3,597,086 + -0.6 3,597,086 + +0.1 3,597,086 + -0.9 3,597,086 + +1.0 3,597,087 - -0.3 3,597,159 + -0.3 3,597,160 - -1.5 3,597,182 + -0.3 3,597,182 + +0.4 3,597,183 - -0.1 3,597,183 - -1.7 3,597,198 + -0.1 3,597,198 + -0.0 3,597,198 + -0.2 3,597,198 + -0.0 3,597,198 + -1.1 3,597,199 - +0.4 3,597,199 - +0.2 3,597,199 - -0.3 3,597,199 - -0.1 3,597,216 - +1.0 3,597,219 + -0.3 3,597,245 - -0.1 3,597,389 + ECD_03421 0.22 -0.6 3,597,422 + ECD_03421 0.25 +0.1 3,597,422 + ECD_03421 0.25 -0.1 3,597,422 + ECD_03421 0.25 -0.7 3,597,422 + ECD_03421 0.25 -1.7 3,597,423 - ECD_03421 0.25 +0.1 3,597,437 - ECD_03421 0.26 +0.5 3,597,440 + ECD_03421 0.26 -0.7 3,597,440 + ECD_03421 0.26 -0.2 3,597,440 + ECD_03421 0.26 +0.2 3,597,440 + ECD_03421 0.26 +0.3 3,597,440 + ECD_03421 0.26 -0.2 3,597,440 + ECD_03421 0.26 +0.5 3,597,440 + ECD_03421 0.26 +0.0 3,597,440 + ECD_03421 0.26 -0.4 3,597,441 - ECD_03421 0.26 -0.8 3,597,441 - ECD_03421 0.26 -0.5 3,597,441 - ECD_03421 0.26 -0.1 3,597,441 - ECD_03421 0.26 -0.3 3,597,441 - ECD_03421 0.26 -0.1 3,597,472 - ECD_03421 0.29 -0.6 3,597,503 + ECD_03421 0.32 +0.6 3,597,551 + ECD_03421 0.36 -0.3 3,597,663 + ECD_03421 0.45 +0.2 3,597,663 + ECD_03421 0.45 -0.1 3,597,691 + ECD_03421 0.47 +0.1 3,597,721 + ECD_03421 0.50 -0.6 3,597,721 + ECD_03421 0.50 +1.1 3,597,721 + ECD_03421 0.50 -1.3 3,597,722 - ECD_03421 0.50 -1.3 3,597,732 + ECD_03421 0.51 +0.0 3,597,732 + ECD_03421 0.51 -0.3 3,597,732 + ECD_03421 0.51 -0.3 3,597,732 + ECD_03421 0.51 +0.6 3,597,733 - ECD_03421 0.51 -1.4 3,597,733 - ECD_03421 0.51 +0.8 3,597,733 - ECD_03421 0.51 +0.5 3,597,733 - ECD_03421 0.51 -0.5 3,597,733 - ECD_03421 0.51 +0.7 3,597,744 + ECD_03421 0.52 +1.0 3,597,744 + ECD_03421 0.52 +0.7 3,597,744 + ECD_03421 0.52 -0.3 3,597,744 + ECD_03421 0.52 -0.9 3,597,744 + ECD_03421 0.52 -0.6 3,597,744 + ECD_03421 0.52 +0.2 3,597,745 - ECD_03421 0.52 -0.1 3,597,745 - ECD_03421 0.52 +0.6 3,597,745 - ECD_03421 0.52 +0.7 3,597,745 - ECD_03421 0.52 -0.3 3,597,748 + ECD_03421 0.52 -2.3 3,597,748 + ECD_03421 0.52 +0.3 3,597,748 + ECD_03421 0.52 -0.3 3,597,749 - ECD_03421 0.52 -0.9 3,597,888 + ECD_03421 0.64 +0.1 3,597,891 + ECD_03421 0.64 -0.1 3,597,891 + ECD_03421 0.64 -0.6 3,597,892 - ECD_03421 0.65 -1.6 3,597,895 + ECD_03421 0.65 +0.5 3,597,895 + ECD_03421 0.65 +0.3 3,597,896 - ECD_03421 0.65 +0.2 3,598,007 + ECD_03421 0.74 -1.7 3,598,007 + ECD_03421 0.74 -0.4 3,598,008 - ECD_03421 0.74 -0.3 3,598,016 - ECD_03421 0.75 +0.2 3,598,036 + ECD_03421 0.77 -0.3 3,598,050 + ECD_03421 0.78 +0.9 3,598,097 - ECD_03421 0.82 -0.3 3,598,256 + -0.1 3,598,256 + -0.5 3,598,287 + -0.6 3,598,291 + -0.3 3,598,291 + +0.1 3,598,291 + +0.2 3,598,291 + -1.5 3,598,291 + +0.0 3,598,291 + +0.3 3,598,308 - -0.6 3,598,403 + -0.1 3,598,403 + -0.6 3,598,404 - -0.3 3,598,433 - -0.0 3,598,456 - +0.1 3,598,485 + +0.5 3,598,506 + -0.1 3,598,506 + +1.3 3,598,506 + -0.6 3,598,506 + -2.1 3,598,506 + -0.3 3,598,507 - -0.1 3,598,507 - -1.6 3,598,507 - -0.5 3,598,507 - +0.2 3,598,507 - -0.4 3,598,507 - -1.0 3,598,507 - -0.4 3,598,507 - -0.6 3,598,510 + +0.6 3,598,510 + -0.9 3,598,511 - -0.6 3,598,511 - +0.7 3,598,511 - -0.6 3,598,542 + +0.6 3,598,543 - -1.6 3,598,557 + -1.1 3,598,557 + -0.5 3,598,558 - -1.4 3,598,558 - -0.4 3,598,558 - -0.2 3,598,564 + +1.1 3,598,565 - -1.1 3,598,565 - +0.5 3,598,566 + -0.4 3,598,566 + -0.1 3,598,566 + +0.3 3,598,567 - +0.5 3,598,639 + ECD_03422 0.16 -0.7 3,598,688 - ECD_03422 0.22 +0.6 3,598,688 - ECD_03422 0.22 -0.1 3,598,704 + ECD_03422 0.24 +0.6 3,598,705 - ECD_03422 0.24 -0.1 3,598,705 - ECD_03422 0.24 -0.1 3,598,732 + ECD_03422 0.28 +0.5 3,598,732 + ECD_03422 0.28 +0.4 3,598,756 + ECD_03422 0.30 -0.9 3,598,771 + ECD_03422 0.32 -0.2 3,598,772 - ECD_03422 0.32 -0.7 3,598,873 + ECD_03422 0.45 +0.9 3,598,910 - ECD_03422 0.49 -0.2 3,598,930 + ECD_03422 0.52 -0.6 3,598,930 + ECD_03422 0.52 -0.6 3,598,934 - ECD_03422 0.52 +0.5 3,598,953 + ECD_03422 0.54 -0.9 3,598,954 - ECD_03422 0.54 +0.3 3,599,066 - ECD_03422 0.68 -0.2 3,599,070 + ECD_03422 0.68 -0.1 3,599,071 - ECD_03422 0.69 +0.0 3,599,078 + ECD_03422 0.69 -0.1 3,599,121 + ECD_03422 0.75 -0.2 3,599,122 - ECD_03422 0.75 -0.1 3,599,146 + ECD_03422 0.78 -0.1 3,599,147 - ECD_03422 0.78 -0.4 3,599,170 - ECD_03422 0.81 +0.4 3,599,187 - ECD_03422 0.83 +0.2 3,599,187 - ECD_03422 0.83 -1.9 3,599,198 - ECD_03422 0.84 +0.2 3,599,198 - ECD_03422 0.84 -0.4 3,599,198 - ECD_03422 0.84 +0.3 3,599,200 + ECD_03422 0.84 +0.4 3,599,201 - ECD_03422 0.84 +0.5 3,599,201 - ECD_03422 0.84 -0.2 3,599,201 - ECD_03422 0.84 +1.6 3,599,201 - ECD_03422 0.84 +0.3 3,599,206 + ECD_03422 0.85 -1.6 3,599,206 + ECD_03422 0.85 +0.1 3,599,282 + -0.4 3,599,283 - +0.4 3,599,287 + -0.5 3,599,287 + -0.0 3,599,288 - +1.0 3,599,288 - +0.1 3,599,288 - +0.3
Or see this region's nucleotide sequence