Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03401 and ECD_03402 are separated by 152 nucleotides ECD_03402 and ECD_03403 are separated by 103 nucleotides
ECD_03401: ECD_03401 - biotin sulfoxide reductase, at 3,576,215 to 3,578,548
_03401
ECD_03402: ECD_03402 - multicopy suppressor of bamB; outer membrane lipoprotein, at 3,578,701 to 3,579,360
_03402
ECD_03403: ECD_03403 - glyoxylate/hydroxypyruvate reductase B, at 3,579,464 to 3,580,438
_03403
Position (kb)
3578
3579
3580 Strain fitness (log2 ratio)
-1
0
1 at 3577.707 kb on + strand, within ECD_03401 at 3577.707 kb on + strand, within ECD_03401 at 3577.708 kb on - strand, within ECD_03401 at 3577.726 kb on - strand, within ECD_03401 at 3577.783 kb on + strand, within ECD_03401 at 3577.847 kb on - strand, within ECD_03401 at 3577.929 kb on + strand, within ECD_03401 at 3578.014 kb on + strand, within ECD_03401 at 3578.053 kb on - strand, within ECD_03401 at 3578.076 kb on + strand, within ECD_03401 at 3578.076 kb on + strand, within ECD_03401 at 3578.077 kb on - strand, within ECD_03401 at 3578.077 kb on - strand, within ECD_03401 at 3578.077 kb on - strand, within ECD_03401 at 3578.109 kb on + strand, within ECD_03401 at 3578.109 kb on + strand, within ECD_03401 at 3578.130 kb on + strand, within ECD_03401 at 3578.131 kb on - strand, within ECD_03401 at 3578.151 kb on + strand, within ECD_03401 at 3578.151 kb on + strand, within ECD_03401 at 3578.151 kb on + strand, within ECD_03401 at 3578.151 kb on + strand, within ECD_03401 at 3578.151 kb on + strand, within ECD_03401 at 3578.151 kb on + strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.152 kb on - strand, within ECD_03401 at 3578.159 kb on + strand, within ECD_03401 at 3578.160 kb on - strand, within ECD_03401 at 3578.160 kb on - strand, within ECD_03401 at 3578.160 kb on - strand, within ECD_03401 at 3578.236 kb on - strand, within ECD_03401 at 3578.236 kb on - strand, within ECD_03401 at 3578.254 kb on + strand, within ECD_03401 at 3578.255 kb on - strand, within ECD_03401 at 3578.255 kb on - strand, within ECD_03401 at 3578.255 kb on - strand, within ECD_03401 at 3578.269 kb on + strand, within ECD_03401 at 3578.461 kb on + strand at 3578.569 kb on + strand at 3578.570 kb on - strand at 3578.576 kb on - strand at 3578.576 kb on - strand at 3578.576 kb on - strand at 3578.593 kb on + strand at 3578.593 kb on + strand at 3578.594 kb on - strand at 3578.623 kb on + strand at 3578.623 kb on + strand at 3578.645 kb on + strand at 3578.686 kb on + strand at 3578.690 kb on - strand at 3578.697 kb on - strand at 3578.716 kb on + strand at 3578.717 kb on - strand at 3578.721 kb on + strand at 3578.721 kb on + strand at 3578.770 kb on - strand, within ECD_03402 at 3578.799 kb on + strand, within ECD_03402 at 3578.808 kb on + strand, within ECD_03402 at 3578.880 kb on + strand, within ECD_03402 at 3578.936 kb on - strand, within ECD_03402 at 3578.936 kb on - strand, within ECD_03402 at 3578.938 kb on + strand, within ECD_03402 at 3578.938 kb on + strand, within ECD_03402 at 3578.938 kb on + strand, within ECD_03402 at 3578.938 kb on + strand, within ECD_03402 at 3578.938 kb on + strand, within ECD_03402 at 3578.939 kb on - strand, within ECD_03402 at 3578.939 kb on - strand, within ECD_03402 at 3578.939 kb on - strand, within ECD_03402 at 3578.939 kb on - strand, within ECD_03402 at 3578.991 kb on + strand, within ECD_03402 at 3579.151 kb on + strand, within ECD_03402 at 3579.151 kb on + strand, within ECD_03402 at 3579.152 kb on - strand, within ECD_03402 at 3579.153 kb on + strand, within ECD_03402 at 3579.315 kb on + strand at 3579.342 kb on + strand at 3579.342 kb on + strand at 3579.343 kb on - strand at 3579.347 kb on + strand at 3579.347 kb on + strand at 3579.358 kb on + strand at 3579.358 kb on + strand at 3579.419 kb on + strand at 3579.429 kb on + strand at 3579.430 kb on - strand at 3579.486 kb on - strand at 3579.507 kb on + strand at 3579.508 kb on - strand at 3579.756 kb on + strand, within ECD_03403 at 3579.864 kb on + strand, within ECD_03403 at 3579.865 kb on - strand, within ECD_03403 at 3579.865 kb on - strand, within ECD_03403 at 3579.898 kb on + strand, within ECD_03403 at 3579.899 kb on - strand, within ECD_03403 at 3580.003 kb on + strand, within ECD_03403 at 3580.003 kb on + strand, within ECD_03403
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,577,707 + ECD_03401 0.64 +0.2 3,577,707 + ECD_03401 0.64 -0.1 3,577,708 - ECD_03401 0.64 +0.5 3,577,726 - ECD_03401 0.65 -0.3 3,577,783 + ECD_03401 0.67 +1.2 3,577,847 - ECD_03401 0.70 -0.3 3,577,929 + ECD_03401 0.73 +0.0 3,578,014 + ECD_03401 0.77 -0.4 3,578,053 - ECD_03401 0.79 +0.6 3,578,076 + ECD_03401 0.80 +1.3 3,578,076 + ECD_03401 0.80 +0.4 3,578,077 - ECD_03401 0.80 +1.1 3,578,077 - ECD_03401 0.80 +0.4 3,578,077 - ECD_03401 0.80 +0.2 3,578,109 + ECD_03401 0.81 -0.5 3,578,109 + ECD_03401 0.81 +0.0 3,578,130 + ECD_03401 0.82 -0.3 3,578,131 - ECD_03401 0.82 +0.7 3,578,151 + ECD_03401 0.83 +0.5 3,578,151 + ECD_03401 0.83 +0.3 3,578,151 + ECD_03401 0.83 +1.0 3,578,151 + ECD_03401 0.83 +0.4 3,578,151 + ECD_03401 0.83 -0.4 3,578,151 + ECD_03401 0.83 -0.4 3,578,152 - ECD_03401 0.83 -0.0 3,578,152 - ECD_03401 0.83 +0.2 3,578,152 - ECD_03401 0.83 +0.3 3,578,152 - ECD_03401 0.83 +0.3 3,578,152 - ECD_03401 0.83 +0.3 3,578,152 - ECD_03401 0.83 +0.0 3,578,152 - ECD_03401 0.83 -0.1 3,578,159 + ECD_03401 0.83 +0.0 3,578,160 - ECD_03401 0.83 -0.3 3,578,160 - ECD_03401 0.83 -0.3 3,578,160 - ECD_03401 0.83 +0.4 3,578,236 - ECD_03401 0.87 -0.6 3,578,236 - ECD_03401 0.87 +0.0 3,578,254 + ECD_03401 0.87 +0.4 3,578,255 - ECD_03401 0.87 +0.4 3,578,255 - ECD_03401 0.87 +0.3 3,578,255 - ECD_03401 0.87 +0.9 3,578,269 + ECD_03401 0.88 +0.4 3,578,461 + -0.7 3,578,569 + +0.1 3,578,570 - +0.8 3,578,576 - +0.1 3,578,576 - -0.7 3,578,576 - +1.4 3,578,593 + +0.9 3,578,593 + +0.6 3,578,594 - +0.3 3,578,623 + -0.5 3,578,623 + -0.5 3,578,645 + +0.8 3,578,686 + -0.2 3,578,690 - +0.2 3,578,697 - +0.9 3,578,716 + +0.1 3,578,717 - -0.1 3,578,721 + -0.3 3,578,721 + +0.4 3,578,770 - ECD_03402 0.10 -0.2 3,578,799 + ECD_03402 0.15 +0.4 3,578,808 + ECD_03402 0.16 -0.4 3,578,880 + ECD_03402 0.27 +0.2 3,578,936 - ECD_03402 0.36 +0.3 3,578,936 - ECD_03402 0.36 +0.4 3,578,938 + ECD_03402 0.36 -0.3 3,578,938 + ECD_03402 0.36 +0.7 3,578,938 + ECD_03402 0.36 -0.1 3,578,938 + ECD_03402 0.36 +0.2 3,578,938 + ECD_03402 0.36 -0.8 3,578,939 - ECD_03402 0.36 -0.5 3,578,939 - ECD_03402 0.36 +0.1 3,578,939 - ECD_03402 0.36 +0.0 3,578,939 - ECD_03402 0.36 -0.4 3,578,991 + ECD_03402 0.44 -0.6 3,579,151 + ECD_03402 0.68 +0.9 3,579,151 + ECD_03402 0.68 -0.5 3,579,152 - ECD_03402 0.68 -0.5 3,579,153 + ECD_03402 0.68 -0.1 3,579,315 + +0.5 3,579,342 + +0.3 3,579,342 + -0.8 3,579,343 - +0.0 3,579,347 + -0.0 3,579,347 + -0.2 3,579,358 + +0.0 3,579,358 + -0.0 3,579,419 + -0.7 3,579,429 + -0.6 3,579,430 - -0.7 3,579,486 - -0.2 3,579,507 + +0.4 3,579,508 - -0.5 3,579,756 + ECD_03403 0.30 +0.0 3,579,864 + ECD_03403 0.41 -0.1 3,579,865 - ECD_03403 0.41 +0.5 3,579,865 - ECD_03403 0.41 +0.4 3,579,898 + ECD_03403 0.45 -0.2 3,579,899 - ECD_03403 0.45 +0.8 3,580,003 + ECD_03403 0.55 +0.0 3,580,003 + ECD_03403 0.55 +0.1
Or see this region's nucleotide sequence