Strain Fitness in Escherichia coli BL21 around ECD_03402

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03401 and ECD_03402 are separated by 152 nucleotidesECD_03402 and ECD_03403 are separated by 103 nucleotides ECD_03401: ECD_03401 - biotin sulfoxide reductase, at 3,576,215 to 3,578,548 _03401 ECD_03402: ECD_03402 - multicopy suppressor of bamB; outer membrane lipoprotein, at 3,578,701 to 3,579,360 _03402 ECD_03403: ECD_03403 - glyoxylate/hydroxypyruvate reductase B, at 3,579,464 to 3,580,438 _03403 Position (kb) 3578 3579 3580Strain fitness (log2 ratio) -1 0 1at 3577.707 kb on + strand, within ECD_03401at 3577.707 kb on + strand, within ECD_03401at 3577.708 kb on - strand, within ECD_03401at 3577.726 kb on - strand, within ECD_03401at 3577.783 kb on + strand, within ECD_03401at 3577.847 kb on - strand, within ECD_03401at 3577.929 kb on + strand, within ECD_03401at 3578.014 kb on + strand, within ECD_03401at 3578.053 kb on - strand, within ECD_03401at 3578.076 kb on + strand, within ECD_03401at 3578.076 kb on + strand, within ECD_03401at 3578.077 kb on - strand, within ECD_03401at 3578.077 kb on - strand, within ECD_03401at 3578.077 kb on - strand, within ECD_03401at 3578.109 kb on + strand, within ECD_03401at 3578.109 kb on + strand, within ECD_03401at 3578.130 kb on + strand, within ECD_03401at 3578.131 kb on - strand, within ECD_03401at 3578.151 kb on + strand, within ECD_03401at 3578.151 kb on + strand, within ECD_03401at 3578.151 kb on + strand, within ECD_03401at 3578.151 kb on + strand, within ECD_03401at 3578.151 kb on + strand, within ECD_03401at 3578.151 kb on + strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.152 kb on - strand, within ECD_03401at 3578.159 kb on + strand, within ECD_03401at 3578.160 kb on - strand, within ECD_03401at 3578.160 kb on - strand, within ECD_03401at 3578.160 kb on - strand, within ECD_03401at 3578.236 kb on - strand, within ECD_03401at 3578.236 kb on - strand, within ECD_03401at 3578.254 kb on + strand, within ECD_03401at 3578.255 kb on - strand, within ECD_03401at 3578.255 kb on - strand, within ECD_03401at 3578.255 kb on - strand, within ECD_03401at 3578.269 kb on + strand, within ECD_03401at 3578.461 kb on + strandat 3578.569 kb on + strandat 3578.570 kb on - strandat 3578.576 kb on - strandat 3578.576 kb on - strandat 3578.576 kb on - strandat 3578.593 kb on + strandat 3578.593 kb on + strandat 3578.594 kb on - strandat 3578.623 kb on + strandat 3578.623 kb on + strandat 3578.645 kb on + strandat 3578.686 kb on + strandat 3578.690 kb on - strandat 3578.697 kb on - strandat 3578.716 kb on + strandat 3578.717 kb on - strandat 3578.721 kb on + strandat 3578.721 kb on + strandat 3578.770 kb on - strand, within ECD_03402at 3578.799 kb on + strand, within ECD_03402at 3578.808 kb on + strand, within ECD_03402at 3578.880 kb on + strand, within ECD_03402at 3578.936 kb on - strand, within ECD_03402at 3578.936 kb on - strand, within ECD_03402at 3578.938 kb on + strand, within ECD_03402at 3578.938 kb on + strand, within ECD_03402at 3578.938 kb on + strand, within ECD_03402at 3578.938 kb on + strand, within ECD_03402at 3578.938 kb on + strand, within ECD_03402at 3578.939 kb on - strand, within ECD_03402at 3578.939 kb on - strand, within ECD_03402at 3578.939 kb on - strand, within ECD_03402at 3578.939 kb on - strand, within ECD_03402at 3578.991 kb on + strand, within ECD_03402at 3579.151 kb on + strand, within ECD_03402at 3579.151 kb on + strand, within ECD_03402at 3579.152 kb on - strand, within ECD_03402at 3579.153 kb on + strand, within ECD_03402at 3579.315 kb on + strandat 3579.342 kb on + strandat 3579.342 kb on + strandat 3579.343 kb on - strandat 3579.347 kb on + strandat 3579.347 kb on + strandat 3579.358 kb on + strandat 3579.358 kb on + strandat 3579.419 kb on + strandat 3579.429 kb on + strandat 3579.430 kb on - strandat 3579.486 kb on - strandat 3579.507 kb on + strandat 3579.508 kb on - strandat 3579.756 kb on + strand, within ECD_03403at 3579.864 kb on + strand, within ECD_03403at 3579.865 kb on - strand, within ECD_03403at 3579.865 kb on - strand, within ECD_03403at 3579.898 kb on + strand, within ECD_03403at 3579.899 kb on - strand, within ECD_03403at 3580.003 kb on + strand, within ECD_03403at 3580.003 kb on + strand, within ECD_03403

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,577,707 + ECD_03401 0.64 +0.2
3,577,707 + ECD_03401 0.64 -0.1
3,577,708 - ECD_03401 0.64 +0.5
3,577,726 - ECD_03401 0.65 -0.3
3,577,783 + ECD_03401 0.67 +1.2
3,577,847 - ECD_03401 0.70 -0.3
3,577,929 + ECD_03401 0.73 +0.0
3,578,014 + ECD_03401 0.77 -0.4
3,578,053 - ECD_03401 0.79 +0.6
3,578,076 + ECD_03401 0.80 +1.3
3,578,076 + ECD_03401 0.80 +0.4
3,578,077 - ECD_03401 0.80 +1.1
3,578,077 - ECD_03401 0.80 +0.4
3,578,077 - ECD_03401 0.80 +0.2
3,578,109 + ECD_03401 0.81 -0.5
3,578,109 + ECD_03401 0.81 +0.0
3,578,130 + ECD_03401 0.82 -0.3
3,578,131 - ECD_03401 0.82 +0.7
3,578,151 + ECD_03401 0.83 +0.5
3,578,151 + ECD_03401 0.83 +0.3
3,578,151 + ECD_03401 0.83 +1.0
3,578,151 + ECD_03401 0.83 +0.4
3,578,151 + ECD_03401 0.83 -0.4
3,578,151 + ECD_03401 0.83 -0.4
3,578,152 - ECD_03401 0.83 -0.0
3,578,152 - ECD_03401 0.83 +0.2
3,578,152 - ECD_03401 0.83 +0.3
3,578,152 - ECD_03401 0.83 +0.3
3,578,152 - ECD_03401 0.83 +0.3
3,578,152 - ECD_03401 0.83 +0.0
3,578,152 - ECD_03401 0.83 -0.1
3,578,159 + ECD_03401 0.83 +0.0
3,578,160 - ECD_03401 0.83 -0.3
3,578,160 - ECD_03401 0.83 -0.3
3,578,160 - ECD_03401 0.83 +0.4
3,578,236 - ECD_03401 0.87 -0.6
3,578,236 - ECD_03401 0.87 +0.0
3,578,254 + ECD_03401 0.87 +0.4
3,578,255 - ECD_03401 0.87 +0.4
3,578,255 - ECD_03401 0.87 +0.3
3,578,255 - ECD_03401 0.87 +0.9
3,578,269 + ECD_03401 0.88 +0.4
3,578,461 + -0.7
3,578,569 + +0.1
3,578,570 - +0.8
3,578,576 - +0.1
3,578,576 - -0.7
3,578,576 - +1.4
3,578,593 + +0.9
3,578,593 + +0.6
3,578,594 - +0.3
3,578,623 + -0.5
3,578,623 + -0.5
3,578,645 + +0.8
3,578,686 + -0.2
3,578,690 - +0.2
3,578,697 - +0.9
3,578,716 + +0.1
3,578,717 - -0.1
3,578,721 + -0.3
3,578,721 + +0.4
3,578,770 - ECD_03402 0.10 -0.2
3,578,799 + ECD_03402 0.15 +0.4
3,578,808 + ECD_03402 0.16 -0.4
3,578,880 + ECD_03402 0.27 +0.2
3,578,936 - ECD_03402 0.36 +0.3
3,578,936 - ECD_03402 0.36 +0.4
3,578,938 + ECD_03402 0.36 -0.3
3,578,938 + ECD_03402 0.36 +0.7
3,578,938 + ECD_03402 0.36 -0.1
3,578,938 + ECD_03402 0.36 +0.2
3,578,938 + ECD_03402 0.36 -0.8
3,578,939 - ECD_03402 0.36 -0.5
3,578,939 - ECD_03402 0.36 +0.1
3,578,939 - ECD_03402 0.36 +0.0
3,578,939 - ECD_03402 0.36 -0.4
3,578,991 + ECD_03402 0.44 -0.6
3,579,151 + ECD_03402 0.68 +0.9
3,579,151 + ECD_03402 0.68 -0.5
3,579,152 - ECD_03402 0.68 -0.5
3,579,153 + ECD_03402 0.68 -0.1
3,579,315 + +0.5
3,579,342 + +0.3
3,579,342 + -0.8
3,579,343 - +0.0
3,579,347 + -0.0
3,579,347 + -0.2
3,579,358 + +0.0
3,579,358 + -0.0
3,579,419 + -0.7
3,579,429 + -0.6
3,579,430 - -0.7
3,579,486 - -0.2
3,579,507 + +0.4
3,579,508 - -0.5
3,579,756 + ECD_03403 0.30 +0.0
3,579,864 + ECD_03403 0.41 -0.1
3,579,865 - ECD_03403 0.41 +0.5
3,579,865 - ECD_03403 0.41 +0.4
3,579,898 + ECD_03403 0.45 -0.2
3,579,899 - ECD_03403 0.45 +0.8
3,580,003 + ECD_03403 0.55 +0.0
3,580,003 + ECD_03403 0.55 +0.1

Or see this region's nucleotide sequence