Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03281 and ECD_03282 overlap by 1 nucleotides ECD_03282 and ECD_03283 are separated by 17 nucleotides
ECD_03281: ECD_03281 - glycogen synthase, at 3,429,750 to 3,431,183
_03281
ECD_03282: ECD_03282 - glucose-1-phosphate adenylyltransferase, at 3,431,183 to 3,432,478
_03282
ECD_03283: ECD_03283 - glycogen debranching enzyme, at 3,432,496 to 3,434,469
_03283
Position (kb)
3431
3432
3433 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3430.313 kb on + strand, within ECD_03281 at 3430.325 kb on + strand, within ECD_03281 at 3430.326 kb on - strand, within ECD_03281 at 3430.326 kb on - strand, within ECD_03281 at 3430.345 kb on - strand, within ECD_03281 at 3430.407 kb on + strand, within ECD_03281 at 3430.407 kb on + strand, within ECD_03281 at 3430.408 kb on - strand, within ECD_03281 at 3430.503 kb on - strand, within ECD_03281 at 3430.508 kb on - strand, within ECD_03281 at 3430.540 kb on + strand, within ECD_03281 at 3430.540 kb on + strand, within ECD_03281 at 3430.541 kb on - strand, within ECD_03281 at 3430.560 kb on - strand, within ECD_03281 at 3430.574 kb on - strand, within ECD_03281 at 3430.574 kb on - strand, within ECD_03281 at 3430.576 kb on + strand, within ECD_03281 at 3430.675 kb on + strand, within ECD_03281 at 3430.676 kb on - strand, within ECD_03281 at 3430.690 kb on + strand, within ECD_03281 at 3430.863 kb on + strand, within ECD_03281 at 3430.863 kb on + strand, within ECD_03281 at 3430.876 kb on + strand, within ECD_03281 at 3430.877 kb on - strand, within ECD_03281 at 3430.884 kb on + strand, within ECD_03281 at 3430.884 kb on + strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.921 kb on + strand, within ECD_03281 at 3430.921 kb on + strand, within ECD_03281 at 3430.922 kb on - strand, within ECD_03281 at 3430.946 kb on - strand, within ECD_03281 at 3430.946 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.964 kb on - strand, within ECD_03281 at 3430.964 kb on - strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3431.013 kb on + strand, within ECD_03281 at 3431.014 kb on - strand, within ECD_03281 at 3431.016 kb on + strand, within ECD_03281 at 3431.017 kb on - strand, within ECD_03281 at 3431.017 kb on - strand, within ECD_03281 at 3431.067 kb on + strand at 3431.166 kb on + strand at 3431.172 kb on + strand at 3431.172 kb on + strand at 3431.360 kb on + strand, within ECD_03282 at 3431.361 kb on - strand, within ECD_03282 at 3431.361 kb on - strand, within ECD_03282 at 3431.361 kb on - strand, within ECD_03282 at 3431.366 kb on + strand, within ECD_03282 at 3431.366 kb on + strand, within ECD_03282 at 3431.367 kb on - strand, within ECD_03282 at 3431.381 kb on + strand, within ECD_03282 at 3431.489 kb on - strand, within ECD_03282 at 3431.489 kb on - strand, within ECD_03282 at 3431.553 kb on + strand, within ECD_03282 at 3431.554 kb on - strand, within ECD_03282 at 3431.554 kb on - strand, within ECD_03282 at 3431.580 kb on + strand, within ECD_03282 at 3431.580 kb on + strand, within ECD_03282 at 3431.581 kb on - strand, within ECD_03282 at 3431.584 kb on + strand, within ECD_03282 at 3431.584 kb on + strand, within ECD_03282 at 3431.585 kb on - strand, within ECD_03282 at 3431.715 kb on + strand, within ECD_03282 at 3431.809 kb on - strand, within ECD_03282 at 3431.809 kb on - strand, within ECD_03282 at 3431.809 kb on - strand, within ECD_03282 at 3431.832 kb on + strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.836 kb on + strand, within ECD_03282 at 3431.843 kb on - strand, within ECD_03282 at 3431.939 kb on - strand, within ECD_03282 at 3431.977 kb on + strand, within ECD_03282 at 3431.977 kb on + strand, within ECD_03282 at 3431.977 kb on + strand, within ECD_03282 at 3431.978 kb on - strand, within ECD_03282 at 3432.026 kb on - strand, within ECD_03282 at 3432.034 kb on - strand, within ECD_03282 at 3432.045 kb on + strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.049 kb on + strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.085 kb on + strand, within ECD_03282 at 3432.085 kb on + strand, within ECD_03282 at 3432.086 kb on - strand, within ECD_03282 at 3432.088 kb on - strand, within ECD_03282 at 3432.088 kb on - strand, within ECD_03282 at 3432.206 kb on - strand, within ECD_03282 at 3432.301 kb on + strand, within ECD_03282 at 3432.301 kb on + strand, within ECD_03282 at 3432.449 kb on + strand at 3432.450 kb on - strand at 3432.450 kb on - strand at 3432.450 kb on - strand at 3432.450 kb on - strand at 3432.473 kb on - strand at 3432.482 kb on + strand at 3432.482 kb on + strand at 3432.483 kb on - strand at 3432.483 kb on - strand at 3432.483 kb on - strand at 3432.604 kb on + strand at 3432.710 kb on - strand, within ECD_03283 at 3432.789 kb on + strand, within ECD_03283 at 3432.790 kb on - strand, within ECD_03283 at 3432.808 kb on + strand, within ECD_03283 at 3432.865 kb on + strand, within ECD_03283 at 3432.884 kb on + strand, within ECD_03283 at 3432.935 kb on - strand, within ECD_03283 at 3433.018 kb on - strand, within ECD_03283 at 3433.035 kb on + strand, within ECD_03283 at 3433.035 kb on + strand, within ECD_03283 at 3433.036 kb on - strand, within ECD_03283 at 3433.036 kb on - strand, within ECD_03283 at 3433.047 kb on + strand, within ECD_03283 at 3433.104 kb on + strand, within ECD_03283 at 3433.188 kb on + strand, within ECD_03283 at 3433.189 kb on - strand, within ECD_03283 at 3433.250 kb on + strand, within ECD_03283 at 3433.250 kb on + strand, within ECD_03283 at 3433.250 kb on + strand, within ECD_03283 at 3433.251 kb on - strand, within ECD_03283 at 3433.251 kb on - strand, within ECD_03283 at 3433.251 kb on - strand, within ECD_03283 at 3433.331 kb on + strand, within ECD_03283 at 3433.367 kb on - strand, within ECD_03283
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,430,313 + ECD_03281 0.39 -0.0 3,430,325 + ECD_03281 0.40 -1.3 3,430,326 - ECD_03281 0.40 -0.3 3,430,326 - ECD_03281 0.40 -1.1 3,430,345 - ECD_03281 0.41 -0.6 3,430,407 + ECD_03281 0.46 +0.7 3,430,407 + ECD_03281 0.46 -0.2 3,430,408 - ECD_03281 0.46 +1.1 3,430,503 - ECD_03281 0.53 +0.8 3,430,508 - ECD_03281 0.53 -0.2 3,430,540 + ECD_03281 0.55 +0.0 3,430,540 + ECD_03281 0.55 -0.1 3,430,541 - ECD_03281 0.55 -0.4 3,430,560 - ECD_03281 0.56 -1.0 3,430,574 - ECD_03281 0.57 -1.8 3,430,574 - ECD_03281 0.57 +0.2 3,430,576 + ECD_03281 0.58 +0.6 3,430,675 + ECD_03281 0.65 -0.4 3,430,676 - ECD_03281 0.65 -0.1 3,430,690 + ECD_03281 0.66 +1.0 3,430,863 + ECD_03281 0.78 -1.9 3,430,863 + ECD_03281 0.78 +0.0 3,430,876 + ECD_03281 0.79 +0.0 3,430,877 - ECD_03281 0.79 +0.1 3,430,884 + ECD_03281 0.79 -0.8 3,430,884 + ECD_03281 0.79 +0.4 3,430,885 - ECD_03281 0.79 -0.0 3,430,885 - ECD_03281 0.79 -0.9 3,430,885 - ECD_03281 0.79 -0.2 3,430,885 - ECD_03281 0.79 -1.5 3,430,921 + ECD_03281 0.82 +0.2 3,430,921 + ECD_03281 0.82 +0.2 3,430,922 - ECD_03281 0.82 -0.7 3,430,946 - ECD_03281 0.83 +0.2 3,430,946 - ECD_03281 0.83 -0.9 3,430,948 - ECD_03281 0.84 +0.7 3,430,948 - ECD_03281 0.84 +0.0 3,430,948 - ECD_03281 0.84 -0.0 3,430,948 - ECD_03281 0.84 -0.1 3,430,948 - ECD_03281 0.84 +0.7 3,430,964 - ECD_03281 0.85 +0.4 3,430,964 - ECD_03281 0.85 -0.1 3,430,985 + ECD_03281 0.86 +0.1 3,430,985 + ECD_03281 0.86 -0.6 3,430,985 + ECD_03281 0.86 +0.3 3,430,985 + ECD_03281 0.86 -0.0 3,430,986 - ECD_03281 0.86 +0.1 3,430,986 - ECD_03281 0.86 -0.4 3,430,986 - ECD_03281 0.86 -0.2 3,430,986 - ECD_03281 0.86 -0.3 3,431,013 + ECD_03281 0.88 -0.7 3,431,014 - ECD_03281 0.88 +0.1 3,431,016 + ECD_03281 0.88 +0.1 3,431,017 - ECD_03281 0.88 +0.0 3,431,017 - ECD_03281 0.88 +0.1 3,431,067 + +0.1 3,431,166 + +0.2 3,431,172 + -0.7 3,431,172 + +0.4 3,431,360 + ECD_03282 0.14 -0.1 3,431,361 - ECD_03282 0.14 +1.0 3,431,361 - ECD_03282 0.14 +0.0 3,431,361 - ECD_03282 0.14 -1.0 3,431,366 + ECD_03282 0.14 +0.1 3,431,366 + ECD_03282 0.14 -0.4 3,431,367 - ECD_03282 0.14 +0.1 3,431,381 + ECD_03282 0.15 +0.1 3,431,489 - ECD_03282 0.24 +0.3 3,431,489 - ECD_03282 0.24 -0.9 3,431,553 + ECD_03282 0.29 -0.3 3,431,554 - ECD_03282 0.29 -0.4 3,431,554 - ECD_03282 0.29 -0.4 3,431,580 + ECD_03282 0.31 -0.4 3,431,580 + ECD_03282 0.31 -0.8 3,431,581 - ECD_03282 0.31 -0.8 3,431,584 + ECD_03282 0.31 -0.0 3,431,584 + ECD_03282 0.31 +0.2 3,431,585 - ECD_03282 0.31 -0.1 3,431,715 + ECD_03282 0.41 -0.5 3,431,809 - ECD_03282 0.48 -0.5 3,431,809 - ECD_03282 0.48 -0.6 3,431,809 - ECD_03282 0.48 -0.1 3,431,832 + ECD_03282 0.50 +0.2 3,431,833 - ECD_03282 0.50 -0.7 3,431,833 - ECD_03282 0.50 -0.9 3,431,833 - ECD_03282 0.50 -0.4 3,431,833 - ECD_03282 0.50 -0.2 3,431,836 + ECD_03282 0.50 +0.6 3,431,843 - ECD_03282 0.51 -0.2 3,431,939 - ECD_03282 0.58 +0.2 3,431,977 + ECD_03282 0.61 -0.6 3,431,977 + ECD_03282 0.61 -0.6 3,431,977 + ECD_03282 0.61 -0.2 3,431,978 - ECD_03282 0.61 -0.9 3,432,026 - ECD_03282 0.65 -0.4 3,432,034 - ECD_03282 0.66 +0.5 3,432,045 + ECD_03282 0.67 +0.7 3,432,046 - ECD_03282 0.67 +0.5 3,432,046 - ECD_03282 0.67 -0.7 3,432,046 - ECD_03282 0.67 -1.5 3,432,046 - ECD_03282 0.67 -1.0 3,432,046 - ECD_03282 0.67 -0.8 3,432,046 - ECD_03282 0.67 -0.6 3,432,049 + ECD_03282 0.67 +0.2 3,432,050 - ECD_03282 0.67 +1.4 3,432,050 - ECD_03282 0.67 +0.4 3,432,050 - ECD_03282 0.67 +0.1 3,432,050 - ECD_03282 0.67 -1.0 3,432,085 + ECD_03282 0.70 +0.4 3,432,085 + ECD_03282 0.70 +0.4 3,432,086 - ECD_03282 0.70 +0.5 3,432,088 - ECD_03282 0.70 -1.0 3,432,088 - ECD_03282 0.70 +0.4 3,432,206 - ECD_03282 0.79 -0.6 3,432,301 + ECD_03282 0.86 -0.4 3,432,301 + ECD_03282 0.86 -0.1 3,432,449 + -0.0 3,432,450 - -0.3 3,432,450 - -0.6 3,432,450 - +0.1 3,432,450 - +0.4 3,432,473 - -0.4 3,432,482 + -0.2 3,432,482 + -1.0 3,432,483 - -0.0 3,432,483 - -0.1 3,432,483 - +1.0 3,432,604 + +0.7 3,432,710 - ECD_03283 0.11 +0.3 3,432,789 + ECD_03283 0.15 +0.5 3,432,790 - ECD_03283 0.15 -1.0 3,432,808 + ECD_03283 0.16 +0.1 3,432,865 + ECD_03283 0.19 +0.1 3,432,884 + ECD_03283 0.20 +0.3 3,432,935 - ECD_03283 0.22 +0.7 3,433,018 - ECD_03283 0.26 +0.1 3,433,035 + ECD_03283 0.27 -0.4 3,433,035 + ECD_03283 0.27 +0.2 3,433,036 - ECD_03283 0.27 +0.5 3,433,036 - ECD_03283 0.27 -0.1 3,433,047 + ECD_03283 0.28 -3.1 3,433,104 + ECD_03283 0.31 +1.4 3,433,188 + ECD_03283 0.35 -0.6 3,433,189 - ECD_03283 0.35 -0.0 3,433,250 + ECD_03283 0.38 +0.4 3,433,250 + ECD_03283 0.38 +0.0 3,433,250 + ECD_03283 0.38 -1.1 3,433,251 - ECD_03283 0.38 +0.1 3,433,251 - ECD_03283 0.38 -0.5 3,433,251 - ECD_03283 0.38 -1.0 3,433,331 + ECD_03283 0.42 -0.6 3,433,367 - ECD_03283 0.44 +0.2
Or see this region's nucleotide sequence