Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03236 and ECD_03237 overlap by 8 nucleotides ECD_03237 and ECD_03238 overlap by 8 nucleotides ECD_03238 and ECD_03239 are separated by 17 nucleotides
ECD_03236: ECD_03236 - tryptophanyl-tRNA synthetase, at 3,373,012 to 3,374,016
_03236
ECD_03237: ECD_03237 - phosphoglycolate phosphatase, at 3,374,009 to 3,374,767
_03237
ECD_03238: ECD_03238 - D-ribulose-5-phosphate 3-epimerase, at 3,374,760 to 3,375,437
_03238
ECD_03239: ECD_03239 - DNA adenine methyltransferase, at 3,375,455 to 3,376,291
_03239
Position (kb)
3374
3375 Strain fitness (log2 ratio)
-2
-1
0
1 at 3374.073 kb on - strand at 3374.075 kb on - strand at 3374.121 kb on + strand, within ECD_03237 at 3374.122 kb on - strand, within ECD_03237 at 3374.125 kb on + strand, within ECD_03237 at 3374.125 kb on + strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.126 kb on - strand, within ECD_03237 at 3374.128 kb on - strand, within ECD_03237 at 3374.128 kb on - strand, within ECD_03237 at 3374.128 kb on - strand, within ECD_03237 at 3374.134 kb on - strand, within ECD_03237 at 3374.139 kb on - strand, within ECD_03237 at 3374.305 kb on + strand, within ECD_03237 at 3374.310 kb on + strand, within ECD_03237 at 3374.310 kb on + strand, within ECD_03237 at 3374.311 kb on - strand, within ECD_03237 at 3374.320 kb on + strand, within ECD_03237 at 3374.324 kb on + strand, within ECD_03237 at 3374.324 kb on + strand, within ECD_03237 at 3374.325 kb on - strand, within ECD_03237 at 3374.325 kb on - strand, within ECD_03237 at 3374.325 kb on - strand, within ECD_03237 at 3374.392 kb on + strand, within ECD_03237 at 3374.414 kb on - strand, within ECD_03237 at 3374.492 kb on - strand, within ECD_03237 at 3374.492 kb on - strand, within ECD_03237 at 3374.492 kb on - strand, within ECD_03237 at 3374.492 kb on - strand, within ECD_03237 at 3374.492 kb on - strand, within ECD_03237 at 3374.496 kb on - strand, within ECD_03237 at 3374.496 kb on - strand, within ECD_03237 at 3374.549 kb on - strand, within ECD_03237 at 3374.627 kb on - strand, within ECD_03237 at 3374.667 kb on + strand, within ECD_03237 at 3374.668 kb on - strand, within ECD_03237 at 3374.677 kb on + strand, within ECD_03237 at 3374.720 kb on - strand at 3374.720 kb on - strand at 3374.773 kb on - strand at 3374.773 kb on - strand at 3374.815 kb on + strand at 3374.945 kb on + strand, within ECD_03238 at 3375.065 kb on - strand, within ECD_03238 at 3375.091 kb on - strand, within ECD_03238 at 3375.091 kb on - strand, within ECD_03238 at 3375.105 kb on - strand, within ECD_03238 at 3375.105 kb on - strand, within ECD_03238 at 3375.171 kb on - strand, within ECD_03238 at 3375.266 kb on + strand, within ECD_03238 at 3375.313 kb on + strand, within ECD_03238 at 3375.314 kb on - strand, within ECD_03238 at 3375.314 kb on - strand, within ECD_03238 at 3375.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,374,073 - -0.4 3,374,075 - -0.1 3,374,121 + ECD_03237 0.15 -0.2 3,374,122 - ECD_03237 0.15 -1.1 3,374,125 + ECD_03237 0.15 -0.2 3,374,125 + ECD_03237 0.15 +0.3 3,374,126 - ECD_03237 0.15 +0.1 3,374,126 - ECD_03237 0.15 -0.5 3,374,126 - ECD_03237 0.15 -0.1 3,374,126 - ECD_03237 0.15 -0.6 3,374,126 - ECD_03237 0.15 -0.7 3,374,126 - ECD_03237 0.15 -0.2 3,374,126 - ECD_03237 0.15 +0.2 3,374,126 - ECD_03237 0.15 +0.6 3,374,126 - ECD_03237 0.15 -0.2 3,374,128 - ECD_03237 0.16 -0.4 3,374,128 - ECD_03237 0.16 -0.0 3,374,128 - ECD_03237 0.16 -0.3 3,374,134 - ECD_03237 0.16 -0.7 3,374,139 - ECD_03237 0.17 +0.1 3,374,305 + ECD_03237 0.39 +0.0 3,374,310 + ECD_03237 0.40 +0.0 3,374,310 + ECD_03237 0.40 -1.1 3,374,311 - ECD_03237 0.40 +0.4 3,374,320 + ECD_03237 0.41 -0.7 3,374,324 + ECD_03237 0.42 -0.3 3,374,324 + ECD_03237 0.42 +0.8 3,374,325 - ECD_03237 0.42 -0.4 3,374,325 - ECD_03237 0.42 -0.7 3,374,325 - ECD_03237 0.42 -0.7 3,374,392 + ECD_03237 0.50 +0.5 3,374,414 - ECD_03237 0.53 -0.2 3,374,492 - ECD_03237 0.64 -0.3 3,374,492 - ECD_03237 0.64 -0.7 3,374,492 - ECD_03237 0.64 -0.0 3,374,492 - ECD_03237 0.64 -0.0 3,374,492 - ECD_03237 0.64 +0.7 3,374,496 - ECD_03237 0.64 +0.1 3,374,496 - ECD_03237 0.64 -1.1 3,374,549 - ECD_03237 0.71 -0.2 3,374,627 - ECD_03237 0.81 -0.8 3,374,667 + ECD_03237 0.87 -1.3 3,374,668 - ECD_03237 0.87 +0.6 3,374,677 + ECD_03237 0.88 -1.0 3,374,720 - +0.3 3,374,720 - +0.7 3,374,773 - -0.1 3,374,773 - -0.3 3,374,815 + -0.2 3,374,945 + ECD_03238 0.27 -0.6 3,375,065 - ECD_03238 0.45 -0.7 3,375,091 - ECD_03238 0.49 +0.4 3,375,091 - ECD_03238 0.49 -0.1 3,375,105 - ECD_03238 0.51 -2.0 3,375,105 - ECD_03238 0.51 -2.2 3,375,171 - ECD_03238 0.61 +0.1 3,375,266 + ECD_03238 0.75 -0.7 3,375,313 + ECD_03238 0.82 -0.9 3,375,314 - ECD_03238 0.82 -0.6 3,375,314 - ECD_03238 0.82 -0.4 3,375,428 - -0.3
Or see this region's nucleotide sequence