Strain Fitness in Escherichia coli BL21 around ECD_03237

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03236 and ECD_03237 overlap by 8 nucleotidesECD_03237 and ECD_03238 overlap by 8 nucleotidesECD_03238 and ECD_03239 are separated by 17 nucleotides ECD_03236: ECD_03236 - tryptophanyl-tRNA synthetase, at 3,373,012 to 3,374,016 _03236 ECD_03237: ECD_03237 - phosphoglycolate phosphatase, at 3,374,009 to 3,374,767 _03237 ECD_03238: ECD_03238 - D-ribulose-5-phosphate 3-epimerase, at 3,374,760 to 3,375,437 _03238 ECD_03239: ECD_03239 - DNA adenine methyltransferase, at 3,375,455 to 3,376,291 _03239 Position (kb) 3374 3375Strain fitness (log2 ratio) -2 -1 0 1at 3374.073 kb on - strandat 3374.075 kb on - strandat 3374.121 kb on + strand, within ECD_03237at 3374.122 kb on - strand, within ECD_03237at 3374.125 kb on + strand, within ECD_03237at 3374.125 kb on + strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.126 kb on - strand, within ECD_03237at 3374.128 kb on - strand, within ECD_03237at 3374.128 kb on - strand, within ECD_03237at 3374.128 kb on - strand, within ECD_03237at 3374.134 kb on - strand, within ECD_03237at 3374.139 kb on - strand, within ECD_03237at 3374.305 kb on + strand, within ECD_03237at 3374.310 kb on + strand, within ECD_03237at 3374.310 kb on + strand, within ECD_03237at 3374.311 kb on - strand, within ECD_03237at 3374.320 kb on + strand, within ECD_03237at 3374.324 kb on + strand, within ECD_03237at 3374.324 kb on + strand, within ECD_03237at 3374.325 kb on - strand, within ECD_03237at 3374.325 kb on - strand, within ECD_03237at 3374.325 kb on - strand, within ECD_03237at 3374.392 kb on + strand, within ECD_03237at 3374.414 kb on - strand, within ECD_03237at 3374.492 kb on - strand, within ECD_03237at 3374.492 kb on - strand, within ECD_03237at 3374.492 kb on - strand, within ECD_03237at 3374.492 kb on - strand, within ECD_03237at 3374.492 kb on - strand, within ECD_03237at 3374.496 kb on - strand, within ECD_03237at 3374.496 kb on - strand, within ECD_03237at 3374.549 kb on - strand, within ECD_03237at 3374.627 kb on - strand, within ECD_03237at 3374.667 kb on + strand, within ECD_03237at 3374.668 kb on - strand, within ECD_03237at 3374.677 kb on + strand, within ECD_03237at 3374.720 kb on - strandat 3374.720 kb on - strandat 3374.773 kb on - strandat 3374.773 kb on - strandat 3374.815 kb on + strandat 3374.945 kb on + strand, within ECD_03238at 3375.065 kb on - strand, within ECD_03238at 3375.091 kb on - strand, within ECD_03238at 3375.091 kb on - strand, within ECD_03238at 3375.105 kb on - strand, within ECD_03238at 3375.105 kb on - strand, within ECD_03238at 3375.171 kb on - strand, within ECD_03238at 3375.266 kb on + strand, within ECD_03238at 3375.313 kb on + strand, within ECD_03238at 3375.314 kb on - strand, within ECD_03238at 3375.314 kb on - strand, within ECD_03238at 3375.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,374,073 - -0.4
3,374,075 - -0.1
3,374,121 + ECD_03237 0.15 -0.2
3,374,122 - ECD_03237 0.15 -1.1
3,374,125 + ECD_03237 0.15 -0.2
3,374,125 + ECD_03237 0.15 +0.3
3,374,126 - ECD_03237 0.15 +0.1
3,374,126 - ECD_03237 0.15 -0.5
3,374,126 - ECD_03237 0.15 -0.1
3,374,126 - ECD_03237 0.15 -0.6
3,374,126 - ECD_03237 0.15 -0.7
3,374,126 - ECD_03237 0.15 -0.2
3,374,126 - ECD_03237 0.15 +0.2
3,374,126 - ECD_03237 0.15 +0.6
3,374,126 - ECD_03237 0.15 -0.2
3,374,128 - ECD_03237 0.16 -0.4
3,374,128 - ECD_03237 0.16 -0.0
3,374,128 - ECD_03237 0.16 -0.3
3,374,134 - ECD_03237 0.16 -0.7
3,374,139 - ECD_03237 0.17 +0.1
3,374,305 + ECD_03237 0.39 +0.0
3,374,310 + ECD_03237 0.40 +0.0
3,374,310 + ECD_03237 0.40 -1.1
3,374,311 - ECD_03237 0.40 +0.4
3,374,320 + ECD_03237 0.41 -0.7
3,374,324 + ECD_03237 0.42 -0.3
3,374,324 + ECD_03237 0.42 +0.8
3,374,325 - ECD_03237 0.42 -0.4
3,374,325 - ECD_03237 0.42 -0.7
3,374,325 - ECD_03237 0.42 -0.7
3,374,392 + ECD_03237 0.50 +0.5
3,374,414 - ECD_03237 0.53 -0.2
3,374,492 - ECD_03237 0.64 -0.3
3,374,492 - ECD_03237 0.64 -0.7
3,374,492 - ECD_03237 0.64 -0.0
3,374,492 - ECD_03237 0.64 -0.0
3,374,492 - ECD_03237 0.64 +0.7
3,374,496 - ECD_03237 0.64 +0.1
3,374,496 - ECD_03237 0.64 -1.1
3,374,549 - ECD_03237 0.71 -0.2
3,374,627 - ECD_03237 0.81 -0.8
3,374,667 + ECD_03237 0.87 -1.3
3,374,668 - ECD_03237 0.87 +0.6
3,374,677 + ECD_03237 0.88 -1.0
3,374,720 - +0.3
3,374,720 - +0.7
3,374,773 - -0.1
3,374,773 - -0.3
3,374,815 + -0.2
3,374,945 + ECD_03238 0.27 -0.6
3,375,065 - ECD_03238 0.45 -0.7
3,375,091 - ECD_03238 0.49 +0.4
3,375,091 - ECD_03238 0.49 -0.1
3,375,105 - ECD_03238 0.51 -2.0
3,375,105 - ECD_03238 0.51 -2.2
3,375,171 - ECD_03238 0.61 +0.1
3,375,266 + ECD_03238 0.75 -0.7
3,375,313 + ECD_03238 0.82 -0.9
3,375,314 - ECD_03238 0.82 -0.6
3,375,314 - ECD_03238 0.82 -0.4
3,375,428 - -0.3

Or see this region's nucleotide sequence