Strain Fitness in Escherichia coli BL21 around ECD_03067

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03065 and ECD_03066 are separated by 6 nucleotidesECD_03066 and ECD_03067 are separated by 47 nucleotidesECD_03067 and ECD_03068 are separated by 22 nucleotidesECD_03068 and ECD_03069 are separated by 117 nucleotidesECD_03069 and ECD_03070 are separated by 45 nucleotides ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437 _03065 ECD_03066: ECD_03066 - lipopolysaccharide export ABC transporter ATPase, at 3,212,444 to 3,213,169 _03066 ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650 _03067 ECD_03068: ECD_03068 - ribosome hibernation promoting factor HPF; stabilizes 100S dimers, at 3,214,673 to 3,214,960 _03068 ECD_03069: ECD_03069 - sugar-specific enzyme IIA component of PTS, at 3,215,078 to 3,215,569 _03069 ECD_03070: ECD_03070 - adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase, at 3,215,615 to 3,216,469 _03070 Position (kb) 3213 3214 3215Strain fitness (log2 ratio) -2 -1 0 1 2at 3213.193 kb on + strandat 3214.123 kb on + strand, within ECD_03067at 3214.123 kb on + strand, within ECD_03067at 3214.496 kb on + strand, within ECD_03067at 3214.635 kb on + strandat 3214.672 kb on + strandat 3214.784 kb on + strand, within ECD_03068at 3214.784 kb on + strand, within ECD_03068at 3214.839 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.909 kb on + strand, within ECD_03068at 3214.936 kb on + strandat 3214.936 kb on + strandat 3214.936 kb on + strandat 3214.958 kb on + strandat 3214.958 kb on + strandat 3214.958 kb on + strandat 3214.974 kb on + strandat 3215.019 kb on + strandat 3215.428 kb on + strand, within ECD_03069at 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.590 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,213,193 + +0.6
3,214,123 + ECD_03067 0.63 -0.6
3,214,123 + ECD_03067 0.63 -0.4
3,214,496 + ECD_03067 0.89 -2.0
3,214,635 + -0.4
3,214,672 + -0.4
3,214,784 + ECD_03068 0.39 +0.9
3,214,784 + ECD_03068 0.39 -0.9
3,214,839 + ECD_03068 0.58 +0.0
3,214,883 + ECD_03068 0.73 -0.8
3,214,883 + ECD_03068 0.73 +0.2
3,214,883 + ECD_03068 0.73 +0.9
3,214,883 + ECD_03068 0.73 -0.2
3,214,883 + ECD_03068 0.73 +0.4
3,214,883 + ECD_03068 0.73 +0.2
3,214,883 + ECD_03068 0.73 +0.9
3,214,909 + ECD_03068 0.82 -1.7
3,214,936 + +0.1
3,214,936 + +0.2
3,214,936 + +0.0
3,214,958 + -1.2
3,214,958 + +0.2
3,214,958 + +0.4
3,214,974 + +2.4
3,215,019 + +0.3
3,215,428 + ECD_03069 0.71 -0.9
3,215,567 + +1.1
3,215,567 + +0.3
3,215,567 + +0.3
3,215,567 + -0.2
3,215,590 + +0.3
3,215,612 + -0.7
3,215,612 + +0.7
3,215,612 + +1.2
3,215,612 + +0.0
3,215,612 + -0.9
3,215,613 - +0.8

Or see this region's nucleotide sequence