Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03065 and ECD_03066 are separated by 6 nucleotides ECD_03066 and ECD_03067 are separated by 47 nucleotides ECD_03067 and ECD_03068 are separated by 22 nucleotides ECD_03068 and ECD_03069 are separated by 117 nucleotides ECD_03069 and ECD_03070 are separated by 45 nucleotides
ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437
_03065
ECD_03066: ECD_03066 - lipopolysaccharide export ABC transporter ATPase, at 3,212,444 to 3,213,169
_03066
ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650
_03067
ECD_03068: ECD_03068 - ribosome hibernation promoting factor HPF; stabilizes 100S dimers, at 3,214,673 to 3,214,960
_03068
ECD_03069: ECD_03069 - sugar-specific enzyme IIA component of PTS, at 3,215,078 to 3,215,569
_03069
ECD_03070: ECD_03070 - adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase, at 3,215,615 to 3,216,469
_03070
Position (kb)
3213
3214
3215 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3213.193 kb on + strand at 3214.123 kb on + strand, within ECD_03067 at 3214.123 kb on + strand, within ECD_03067 at 3214.496 kb on + strand, within ECD_03067 at 3214.635 kb on + strand at 3214.672 kb on + strand at 3214.784 kb on + strand, within ECD_03068 at 3214.784 kb on + strand, within ECD_03068 at 3214.839 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.909 kb on + strand, within ECD_03068 at 3214.936 kb on + strand at 3214.936 kb on + strand at 3214.936 kb on + strand at 3214.958 kb on + strand at 3214.958 kb on + strand at 3214.958 kb on + strand at 3214.974 kb on + strand at 3215.019 kb on + strand at 3215.428 kb on + strand, within ECD_03069 at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.590 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,213,193 + +0.6 3,214,123 + ECD_03067 0.63 -0.6 3,214,123 + ECD_03067 0.63 -0.4 3,214,496 + ECD_03067 0.89 -2.0 3,214,635 + -0.4 3,214,672 + -0.4 3,214,784 + ECD_03068 0.39 +0.9 3,214,784 + ECD_03068 0.39 -0.9 3,214,839 + ECD_03068 0.58 +0.0 3,214,883 + ECD_03068 0.73 -0.8 3,214,883 + ECD_03068 0.73 +0.2 3,214,883 + ECD_03068 0.73 +0.9 3,214,883 + ECD_03068 0.73 -0.2 3,214,883 + ECD_03068 0.73 +0.4 3,214,883 + ECD_03068 0.73 +0.2 3,214,883 + ECD_03068 0.73 +0.9 3,214,909 + ECD_03068 0.82 -1.7 3,214,936 + +0.1 3,214,936 + +0.2 3,214,936 + +0.0 3,214,958 + -1.2 3,214,958 + +0.2 3,214,958 + +0.4 3,214,974 + +2.4 3,215,019 + +0.3 3,215,428 + ECD_03069 0.71 -0.9 3,215,567 + +1.1 3,215,567 + +0.3 3,215,567 + +0.3 3,215,567 + -0.2 3,215,590 + +0.3 3,215,612 + -0.7 3,215,612 + +0.7 3,215,612 + +1.2 3,215,612 + +0.0 3,215,612 + -0.9 3,215,613 - +0.8
Or see this region's nucleotide sequence