Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02968 and ECD_02969 overlap by 11 nucleotides ECD_02969 and ECD_02970 are separated by 185 nucleotides ECD_02970 and ECD_02971 are separated by 69 nucleotides ECD_02971 and ECD_02972 are separated by 292 nucleotides ECD_02972 and ECD_02973 are separated by 241 nucleotides
ECD_02968: ECD_02968 - DUF1469 family inner membrane protein, at 3,115,982 to 3,116,386
_02968
ECD_02969: ECD_02969 - uncharacterized protein, at 3,116,376 to 3,116,675
_02969
ECD_02970: ECD_02970 - putative quinol oxidase subunit, at 3,116,861 to 3,117,253
_02970
ECD_02971: ECD_02971 - putative S-transferase, at 3,117,323 to 3,118,309
_02971
ECD_02972: ECD_02972 - DUF805 family inner membrane protein, at 3,118,602 to 3,118,967
_02972
ECD_02973: ECD_02973 - DUF805 family inner membrane protein, at 3,119,209 to 3,119,565
_02973
Position (kb)
3117
3118
3119 Strain fitness (log2 ratio)
-2
-1
0
1 at 3116.326 kb on + strand, within ECD_02968 at 3116.384 kb on + strand at 3116.406 kb on - strand, within ECD_02969 at 3116.508 kb on - strand, within ECD_02969 at 3116.515 kb on + strand, within ECD_02969 at 3116.515 kb on + strand, within ECD_02969 at 3116.515 kb on + strand, within ECD_02969 at 3116.516 kb on - strand, within ECD_02969 at 3116.516 kb on - strand, within ECD_02969 at 3116.579 kb on + strand, within ECD_02969 at 3116.579 kb on + strand, within ECD_02969 at 3116.579 kb on + strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.580 kb on - strand, within ECD_02969 at 3116.582 kb on + strand, within ECD_02969 at 3116.582 kb on + strand, within ECD_02969 at 3116.583 kb on - strand, within ECD_02969 at 3116.583 kb on - strand, within ECD_02969 at 3116.618 kb on - strand, within ECD_02969 at 3116.674 kb on - strand at 3116.800 kb on + strand at 3116.801 kb on - strand at 3116.801 kb on - strand at 3116.802 kb on - strand at 3116.860 kb on - strand at 3116.969 kb on + strand, within ECD_02970 at 3116.970 kb on - strand, within ECD_02970 at 3116.971 kb on + strand, within ECD_02970 at 3116.971 kb on + strand, within ECD_02970 at 3116.971 kb on + strand, within ECD_02970 at 3116.971 kb on + strand, within ECD_02970 at 3116.999 kb on - strand, within ECD_02970 at 3116.999 kb on - strand, within ECD_02970 at 3117.082 kb on + strand, within ECD_02970 at 3117.220 kb on + strand at 3117.220 kb on + strand at 3117.251 kb on + strand at 3117.264 kb on + strand at 3117.264 kb on + strand at 3117.265 kb on - strand at 3117.494 kb on + strand, within ECD_02971 at 3117.653 kb on + strand, within ECD_02971 at 3117.654 kb on - strand, within ECD_02971 at 3117.680 kb on + strand, within ECD_02971 at 3117.716 kb on - strand, within ECD_02971 at 3117.716 kb on - strand, within ECD_02971 at 3117.791 kb on - strand, within ECD_02971 at 3117.831 kb on - strand, within ECD_02971 at 3117.831 kb on - strand, within ECD_02971 at 3117.881 kb on + strand, within ECD_02971 at 3117.881 kb on + strand, within ECD_02971 at 3117.906 kb on - strand, within ECD_02971 at 3117.906 kb on - strand, within ECD_02971 at 3117.907 kb on + strand, within ECD_02971 at 3117.908 kb on - strand, within ECD_02971 at 3117.908 kb on - strand, within ECD_02971 at 3117.908 kb on - strand, within ECD_02971 at 3117.938 kb on + strand, within ECD_02971 at 3117.938 kb on + strand, within ECD_02971 at 3118.079 kb on + strand, within ECD_02971 at 3118.079 kb on + strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.080 kb on - strand, within ECD_02971 at 3118.103 kb on - strand, within ECD_02971 at 3118.126 kb on + strand, within ECD_02971 at 3118.155 kb on - strand, within ECD_02971 at 3118.155 kb on - strand, within ECD_02971 at 3118.208 kb on + strand, within ECD_02971 at 3118.208 kb on + strand, within ECD_02971 at 3118.209 kb on - strand, within ECD_02971 at 3118.222 kb on + strand at 3118.238 kb on - strand at 3118.247 kb on - strand at 3118.322 kb on + strand at 3118.323 kb on - strand at 3118.338 kb on + strand at 3118.343 kb on - strand at 3118.343 kb on - strand at 3118.346 kb on + strand at 3118.346 kb on + strand at 3118.347 kb on - strand at 3118.347 kb on - strand at 3118.347 kb on - strand at 3118.528 kb on + strand at 3118.776 kb on + strand, within ECD_02972 at 3118.776 kb on + strand, within ECD_02972 at 3118.777 kb on - strand, within ECD_02972 at 3118.890 kb on - strand, within ECD_02972 at 3118.966 kb on - strand at 3118.966 kb on - strand at 3119.008 kb on - strand at 3119.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,116,326 + ECD_02968 0.85 -0.8 3,116,384 + -1.2 3,116,406 - ECD_02969 0.10 -1.9 3,116,508 - ECD_02969 0.44 +0.0 3,116,515 + ECD_02969 0.46 +0.5 3,116,515 + ECD_02969 0.46 -0.5 3,116,515 + ECD_02969 0.46 +0.3 3,116,516 - ECD_02969 0.47 +0.0 3,116,516 - ECD_02969 0.47 +0.3 3,116,579 + ECD_02969 0.68 +0.1 3,116,579 + ECD_02969 0.68 +0.5 3,116,579 + ECD_02969 0.68 +0.4 3,116,580 - ECD_02969 0.68 +1.4 3,116,580 - ECD_02969 0.68 -0.5 3,116,580 - ECD_02969 0.68 +0.5 3,116,580 - ECD_02969 0.68 +0.2 3,116,580 - ECD_02969 0.68 +0.6 3,116,580 - ECD_02969 0.68 -0.1 3,116,580 - ECD_02969 0.68 +0.8 3,116,582 + ECD_02969 0.69 +0.3 3,116,582 + ECD_02969 0.69 +0.6 3,116,583 - ECD_02969 0.69 -1.2 3,116,583 - ECD_02969 0.69 +0.4 3,116,618 - ECD_02969 0.81 +1.2 3,116,674 - -1.6 3,116,800 + +0.1 3,116,801 - -0.1 3,116,801 - -0.7 3,116,802 - -1.0 3,116,860 - -0.4 3,116,969 + ECD_02970 0.27 +0.6 3,116,970 - ECD_02970 0.28 -0.3 3,116,971 + ECD_02970 0.28 +0.2 3,116,971 + ECD_02970 0.28 -1.4 3,116,971 + ECD_02970 0.28 +0.8 3,116,971 + ECD_02970 0.28 -1.0 3,116,999 - ECD_02970 0.35 +0.4 3,116,999 - ECD_02970 0.35 -0.2 3,117,082 + ECD_02970 0.56 +0.6 3,117,220 + +0.3 3,117,220 + -0.0 3,117,251 + -1.2 3,117,264 + -1.4 3,117,264 + +0.8 3,117,265 - +0.0 3,117,494 + ECD_02971 0.17 -0.7 3,117,653 + ECD_02971 0.33 -2.2 3,117,654 - ECD_02971 0.34 -0.9 3,117,680 + ECD_02971 0.36 +0.1 3,117,716 - ECD_02971 0.40 +0.1 3,117,716 - ECD_02971 0.40 +1.1 3,117,791 - ECD_02971 0.47 +0.7 3,117,831 - ECD_02971 0.51 -0.2 3,117,831 - ECD_02971 0.51 -0.4 3,117,881 + ECD_02971 0.57 +0.4 3,117,881 + ECD_02971 0.57 +0.0 3,117,906 - ECD_02971 0.59 -0.2 3,117,906 - ECD_02971 0.59 +0.3 3,117,907 + ECD_02971 0.59 +0.2 3,117,908 - ECD_02971 0.59 +0.4 3,117,908 - ECD_02971 0.59 +0.8 3,117,908 - ECD_02971 0.59 +0.4 3,117,938 + ECD_02971 0.62 +0.5 3,117,938 + ECD_02971 0.62 -0.0 3,118,079 + ECD_02971 0.77 +0.4 3,118,079 + ECD_02971 0.77 +0.5 3,118,080 - ECD_02971 0.77 -0.3 3,118,080 - ECD_02971 0.77 +0.4 3,118,080 - ECD_02971 0.77 -0.5 3,118,080 - ECD_02971 0.77 +0.1 3,118,080 - ECD_02971 0.77 -0.2 3,118,080 - ECD_02971 0.77 -0.5 3,118,080 - ECD_02971 0.77 -0.6 3,118,080 - ECD_02971 0.77 +0.4 3,118,080 - ECD_02971 0.77 +0.5 3,118,080 - ECD_02971 0.77 +1.0 3,118,103 - ECD_02971 0.79 +0.7 3,118,126 + ECD_02971 0.81 +0.4 3,118,155 - ECD_02971 0.84 +1.4 3,118,155 - ECD_02971 0.84 +0.2 3,118,208 + ECD_02971 0.90 +0.2 3,118,208 + ECD_02971 0.90 +0.9 3,118,209 - ECD_02971 0.90 +0.4 3,118,222 + -0.4 3,118,238 - -0.5 3,118,247 - -1.4 3,118,322 + +0.8 3,118,323 - -0.8 3,118,338 + +0.1 3,118,343 - +0.7 3,118,343 - +0.0 3,118,346 + +0.4 3,118,346 + +0.7 3,118,347 - +0.9 3,118,347 - +0.4 3,118,347 - -0.2 3,118,528 + -0.5 3,118,776 + ECD_02972 0.48 -0.1 3,118,776 + ECD_02972 0.48 -0.2 3,118,777 - ECD_02972 0.48 -0.0 3,118,890 - ECD_02972 0.79 -0.9 3,118,966 - -0.2 3,118,966 - +0.2 3,119,008 - +0.1 3,119,106 + -0.1
Or see this region's nucleotide sequence