Strain Fitness in Escherichia coli BL21 around ECD_02719

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02717 and ECD_02718 are separated by 35 nucleotidesECD_02718 and ECD_02719 overlap by 1 nucleotidesECD_02719 and ECD_02720 are separated by 435 nucleotides ECD_02717: ECD_02717 - guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter, at 2,857,982 to 2,859,349 _02717 ECD_02718: ECD_02718 - putative 4Fe-4S ferredoxin-type oxidoreductase subunit, at 2,859,385 to 2,859,873 _02718 ECD_02719: ECD_02719 - putative oxidoreductase, Fe-S subunit/nucleotide-binding subunit, at 2,859,873 to 2,861,792 _02719 ECD_02720: ECD_02720 - uric acid permease, at 2,862,228 to 2,863,676 _02720 Position (kb) 2859 2860 2861 2862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2858.910 kb on + strand, within ECD_02717at 2858.910 kb on + strand, within ECD_02717at 2858.910 kb on + strand, within ECD_02717at 2858.957 kb on + strand, within ECD_02717at 2858.958 kb on - strand, within ECD_02717at 2859.049 kb on - strand, within ECD_02717at 2859.101 kb on + strand, within ECD_02717at 2859.101 kb on + strand, within ECD_02717at 2859.101 kb on + strand, within ECD_02717at 2859.101 kb on + strand, within ECD_02717at 2859.102 kb on - strand, within ECD_02717at 2859.102 kb on - strand, within ECD_02717at 2859.102 kb on - strand, within ECD_02717at 2859.102 kb on - strand, within ECD_02717at 2859.105 kb on + strand, within ECD_02717at 2859.105 kb on + strand, within ECD_02717at 2859.106 kb on - strand, within ECD_02717at 2859.106 kb on - strand, within ECD_02717at 2859.106 kb on - strand, within ECD_02717at 2859.106 kb on - strand, within ECD_02717at 2859.106 kb on - strand, within ECD_02717at 2859.120 kb on + strand, within ECD_02717at 2859.120 kb on + strand, within ECD_02717at 2859.120 kb on + strand, within ECD_02717at 2859.120 kb on + strand, within ECD_02717at 2859.121 kb on - strand, within ECD_02717at 2859.121 kb on - strand, within ECD_02717at 2859.124 kb on + strand, within ECD_02717at 2859.125 kb on - strand, within ECD_02717at 2859.125 kb on - strand, within ECD_02717at 2859.155 kb on - strand, within ECD_02717at 2859.155 kb on - strand, within ECD_02717at 2859.163 kb on + strand, within ECD_02717at 2859.205 kb on + strand, within ECD_02717at 2859.205 kb on + strand, within ECD_02717at 2859.205 kb on + strand, within ECD_02717at 2859.205 kb on + strand, within ECD_02717at 2859.205 kb on + strand, within ECD_02717at 2859.206 kb on - strand, within ECD_02717at 2859.206 kb on - strand, within ECD_02717at 2859.208 kb on + strand, within ECD_02717at 2859.208 kb on + strand, within ECD_02717at 2859.209 kb on - strand, within ECD_02717at 2859.220 kb on + strandat 2859.220 kb on + strandat 2859.223 kb on + strandat 2859.224 kb on - strandat 2859.224 kb on - strandat 2859.224 kb on - strandat 2859.292 kb on + strandat 2859.347 kb on + strandat 2859.348 kb on - strandat 2859.348 kb on - strandat 2859.351 kb on - strandat 2859.414 kb on + strandat 2859.414 kb on + strandat 2859.414 kb on + strandat 2859.415 kb on - strandat 2859.615 kb on + strand, within ECD_02718at 2859.615 kb on + strand, within ECD_02718at 2859.615 kb on + strand, within ECD_02718at 2859.615 kb on + strand, within ECD_02718at 2859.616 kb on - strand, within ECD_02718at 2859.746 kb on - strand, within ECD_02718at 2859.826 kb on - strandat 2859.826 kb on - strandat 2859.826 kb on - strandat 2859.826 kb on - strandat 2859.858 kb on + strandat 2859.858 kb on + strandat 2859.859 kb on - strandat 2859.863 kb on - strandat 2859.888 kb on - strandat 2859.901 kb on - strandat 2860.008 kb on - strandat 2860.011 kb on + strandat 2860.012 kb on - strandat 2860.012 kb on - strandat 2860.012 kb on - strandat 2860.012 kb on - strandat 2860.012 kb on - strandat 2860.016 kb on - strandat 2860.059 kb on - strandat 2860.225 kb on - strand, within ECD_02719at 2860.250 kb on + strand, within ECD_02719at 2860.251 kb on - strand, within ECD_02719at 2860.252 kb on + strand, within ECD_02719at 2860.252 kb on + strand, within ECD_02719at 2860.253 kb on - strand, within ECD_02719at 2860.426 kb on - strand, within ECD_02719at 2860.440 kb on - strand, within ECD_02719at 2860.518 kb on + strand, within ECD_02719at 2860.606 kb on + strand, within ECD_02719at 2860.632 kb on - strand, within ECD_02719at 2860.632 kb on - strand, within ECD_02719at 2860.632 kb on - strand, within ECD_02719at 2860.655 kb on + strand, within ECD_02719at 2860.655 kb on + strand, within ECD_02719at 2860.655 kb on + strand, within ECD_02719at 2860.656 kb on - strand, within ECD_02719at 2860.656 kb on - strand, within ECD_02719at 2860.704 kb on + strand, within ECD_02719at 2860.704 kb on + strand, within ECD_02719at 2860.704 kb on + strand, within ECD_02719at 2860.705 kb on - strand, within ECD_02719at 2860.705 kb on - strand, within ECD_02719at 2860.752 kb on - strand, within ECD_02719at 2860.927 kb on + strand, within ECD_02719at 2860.928 kb on - strand, within ECD_02719at 2860.928 kb on - strand, within ECD_02719at 2860.928 kb on - strand, within ECD_02719at 2860.946 kb on + strand, within ECD_02719at 2860.976 kb on + strand, within ECD_02719at 2861.010 kb on + strand, within ECD_02719at 2861.011 kb on - strand, within ECD_02719at 2861.011 kb on - strand, within ECD_02719at 2861.011 kb on - strand, within ECD_02719at 2861.011 kb on - strand, within ECD_02719at 2861.011 kb on - strand, within ECD_02719at 2861.099 kb on - strand, within ECD_02719at 2861.108 kb on + strand, within ECD_02719at 2861.142 kb on - strand, within ECD_02719at 2861.158 kb on + strand, within ECD_02719at 2861.158 kb on + strand, within ECD_02719at 2861.159 kb on - strand, within ECD_02719at 2861.179 kb on + strand, within ECD_02719at 2861.180 kb on - strand, within ECD_02719at 2861.180 kb on - strand, within ECD_02719at 2861.180 kb on - strand, within ECD_02719at 2861.180 kb on - strand, within ECD_02719at 2861.210 kb on - strand, within ECD_02719at 2861.210 kb on - strand, within ECD_02719at 2861.210 kb on - strand, within ECD_02719at 2861.210 kb on - strand, within ECD_02719at 2861.211 kb on + strand, within ECD_02719at 2861.211 kb on + strand, within ECD_02719at 2861.212 kb on - strand, within ECD_02719at 2861.212 kb on - strand, within ECD_02719at 2861.358 kb on + strand, within ECD_02719at 2861.359 kb on - strand, within ECD_02719at 2861.359 kb on - strand, within ECD_02719at 2861.448 kb on - strand, within ECD_02719at 2861.553 kb on + strand, within ECD_02719at 2861.554 kb on - strand, within ECD_02719at 2861.554 kb on - strand, within ECD_02719at 2861.554 kb on - strand, within ECD_02719at 2861.659 kb on - strandat 2861.659 kb on - strandat 2861.659 kb on - strandat 2861.669 kb on + strandat 2861.670 kb on - strandat 2861.755 kb on - strandat 2861.757 kb on - strandat 2861.757 kb on - strandat 2861.757 kb on - strandat 2861.757 kb on - strandat 2861.757 kb on - strandat 2861.757 kb on - strandat 2861.817 kb on + strandat 2861.817 kb on + strandat 2861.855 kb on - strandat 2861.855 kb on - strandat 2861.855 kb on - strandat 2861.855 kb on - strandat 2861.855 kb on - strandat 2861.856 kb on + strandat 2861.857 kb on - strandat 2861.857 kb on - strandat 2861.857 kb on - strandat 2861.857 kb on - strandat 2861.860 kb on - strandat 2861.864 kb on - strandat 2861.907 kb on - strandat 2862.121 kb on + strandat 2862.122 kb on - strandat 2862.238 kb on + strandat 2862.238 kb on + strandat 2862.239 kb on - strandat 2862.301 kb on + strandat 2862.301 kb on + strandat 2862.301 kb on + strandat 2862.322 kb on + strandat 2862.322 kb on + strandat 2862.351 kb on + strandat 2862.351 kb on + strandat 2862.351 kb on + strandat 2862.352 kb on - strandat 2862.413 kb on + strand, within ECD_02720at 2862.414 kb on - strand, within ECD_02720at 2862.414 kb on - strand, within ECD_02720at 2862.464 kb on - strand, within ECD_02720at 2862.473 kb on + strand, within ECD_02720at 2862.474 kb on - strand, within ECD_02720at 2862.516 kb on - strand, within ECD_02720at 2862.516 kb on - strand, within ECD_02720at 2862.538 kb on + strand, within ECD_02720at 2862.550 kb on + strand, within ECD_02720at 2862.551 kb on - strand, within ECD_02720at 2862.628 kb on + strand, within ECD_02720at 2862.628 kb on + strand, within ECD_02720at 2862.629 kb on - strand, within ECD_02720at 2862.692 kb on + strand, within ECD_02720at 2862.692 kb on + strand, within ECD_02720at 2862.693 kb on - strand, within ECD_02720at 2862.693 kb on - strand, within ECD_02720at 2862.693 kb on - strand, within ECD_02720at 2862.698 kb on + strand, within ECD_02720at 2862.708 kb on - strand, within ECD_02720at 2862.708 kb on - strand, within ECD_02720at 2862.781 kb on + strand, within ECD_02720at 2862.781 kb on + strand, within ECD_02720at 2862.785 kb on + strand, within ECD_02720

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,858,910 + ECD_02717 0.68 +1.3
2,858,910 + ECD_02717 0.68 +1.5
2,858,910 + ECD_02717 0.68 +0.6
2,858,957 + ECD_02717 0.71 +0.8
2,858,958 - ECD_02717 0.71 -0.2
2,859,049 - ECD_02717 0.78 +0.7
2,859,101 + ECD_02717 0.82 +0.4
2,859,101 + ECD_02717 0.82 +0.2
2,859,101 + ECD_02717 0.82 -1.5
2,859,101 + ECD_02717 0.82 -0.7
2,859,102 - ECD_02717 0.82 -1.0
2,859,102 - ECD_02717 0.82 -0.6
2,859,102 - ECD_02717 0.82 -0.8
2,859,102 - ECD_02717 0.82 -0.5
2,859,105 + ECD_02717 0.82 +0.6
2,859,105 + ECD_02717 0.82 +0.2
2,859,106 - ECD_02717 0.82 -1.0
2,859,106 - ECD_02717 0.82 +0.5
2,859,106 - ECD_02717 0.82 -0.8
2,859,106 - ECD_02717 0.82 +0.8
2,859,106 - ECD_02717 0.82 +0.0
2,859,120 + ECD_02717 0.83 +0.4
2,859,120 + ECD_02717 0.83 -0.1
2,859,120 + ECD_02717 0.83 +0.4
2,859,120 + ECD_02717 0.83 -0.1
2,859,121 - ECD_02717 0.83 -1.2
2,859,121 - ECD_02717 0.83 +0.0
2,859,124 + ECD_02717 0.83 -1.8
2,859,125 - ECD_02717 0.84 -0.6
2,859,125 - ECD_02717 0.84 -0.4
2,859,155 - ECD_02717 0.86 +0.3
2,859,155 - ECD_02717 0.86 -0.6
2,859,163 + ECD_02717 0.86 +0.3
2,859,205 + ECD_02717 0.89 -0.2
2,859,205 + ECD_02717 0.89 -1.1
2,859,205 + ECD_02717 0.89 +0.4
2,859,205 + ECD_02717 0.89 -0.5
2,859,205 + ECD_02717 0.89 -1.3
2,859,206 - ECD_02717 0.89 +1.0
2,859,206 - ECD_02717 0.89 +1.2
2,859,208 + ECD_02717 0.90 -1.8
2,859,208 + ECD_02717 0.90 +0.6
2,859,209 - ECD_02717 0.90 +0.2
2,859,220 + -0.4
2,859,220 + +0.6
2,859,223 + +1.6
2,859,224 - +0.5
2,859,224 - -0.4
2,859,224 - -1.3
2,859,292 + -0.2
2,859,347 + -0.1
2,859,348 - -0.6
2,859,348 - -0.3
2,859,351 - -0.5
2,859,414 + -0.0
2,859,414 + -0.5
2,859,414 + -0.9
2,859,415 - -0.3
2,859,615 + ECD_02718 0.47 +0.1
2,859,615 + ECD_02718 0.47 -0.3
2,859,615 + ECD_02718 0.47 -0.5
2,859,615 + ECD_02718 0.47 +0.7
2,859,616 - ECD_02718 0.47 +0.3
2,859,746 - ECD_02718 0.74 +0.2
2,859,826 - -0.6
2,859,826 - +0.3
2,859,826 - +0.4
2,859,826 - +0.5
2,859,858 + -0.3
2,859,858 + +1.3
2,859,859 - -0.4
2,859,863 - -0.4
2,859,888 - -0.7
2,859,901 - -0.3
2,860,008 - -0.2
2,860,011 + +1.1
2,860,012 - +0.0
2,860,012 - -0.5
2,860,012 - -0.2
2,860,012 - -0.8
2,860,012 - +0.3
2,860,016 - +0.3
2,860,059 - -0.3
2,860,225 - ECD_02719 0.18 +0.2
2,860,250 + ECD_02719 0.20 +0.4
2,860,251 - ECD_02719 0.20 +0.5
2,860,252 + ECD_02719 0.20 +0.2
2,860,252 + ECD_02719 0.20 -0.2
2,860,253 - ECD_02719 0.20 +0.0
2,860,426 - ECD_02719 0.29 +0.5
2,860,440 - ECD_02719 0.30 -0.7
2,860,518 + ECD_02719 0.34 -1.2
2,860,606 + ECD_02719 0.38 -0.1
2,860,632 - ECD_02719 0.40 -3.1
2,860,632 - ECD_02719 0.40 -0.2
2,860,632 - ECD_02719 0.40 +0.4
2,860,655 + ECD_02719 0.41 +0.5
2,860,655 + ECD_02719 0.41 -0.4
2,860,655 + ECD_02719 0.41 +0.4
2,860,656 - ECD_02719 0.41 -0.4
2,860,656 - ECD_02719 0.41 -0.7
2,860,704 + ECD_02719 0.43 +0.1
2,860,704 + ECD_02719 0.43 -0.7
2,860,704 + ECD_02719 0.43 +0.1
2,860,705 - ECD_02719 0.43 -0.1
2,860,705 - ECD_02719 0.43 -0.6
2,860,752 - ECD_02719 0.46 -0.6
2,860,927 + ECD_02719 0.55 +0.0
2,860,928 - ECD_02719 0.55 -0.4
2,860,928 - ECD_02719 0.55 -1.7
2,860,928 - ECD_02719 0.55 -0.1
2,860,946 + ECD_02719 0.56 +0.2
2,860,976 + ECD_02719 0.57 -0.8
2,861,010 + ECD_02719 0.59 -1.8
2,861,011 - ECD_02719 0.59 +0.0
2,861,011 - ECD_02719 0.59 -0.7
2,861,011 - ECD_02719 0.59 +0.1
2,861,011 - ECD_02719 0.59 +1.5
2,861,011 - ECD_02719 0.59 -0.4
2,861,099 - ECD_02719 0.64 +0.4
2,861,108 + ECD_02719 0.64 +0.4
2,861,142 - ECD_02719 0.66 -0.5
2,861,158 + ECD_02719 0.67 +0.6
2,861,158 + ECD_02719 0.67 +1.0
2,861,159 - ECD_02719 0.67 +0.4
2,861,179 + ECD_02719 0.68 +0.2
2,861,180 - ECD_02719 0.68 +0.4
2,861,180 - ECD_02719 0.68 -1.7
2,861,180 - ECD_02719 0.68 +0.3
2,861,180 - ECD_02719 0.68 -0.1
2,861,210 - ECD_02719 0.70 -0.8
2,861,210 - ECD_02719 0.70 -0.0
2,861,210 - ECD_02719 0.70 +0.8
2,861,210 - ECD_02719 0.70 -0.2
2,861,211 + ECD_02719 0.70 -2.3
2,861,211 + ECD_02719 0.70 +0.3
2,861,212 - ECD_02719 0.70 -0.2
2,861,212 - ECD_02719 0.70 +0.2
2,861,358 + ECD_02719 0.77 -0.6
2,861,359 - ECD_02719 0.77 -0.8
2,861,359 - ECD_02719 0.77 +3.1
2,861,448 - ECD_02719 0.82 +0.7
2,861,553 + ECD_02719 0.88 -0.1
2,861,554 - ECD_02719 0.88 +1.5
2,861,554 - ECD_02719 0.88 -0.4
2,861,554 - ECD_02719 0.88 +0.2
2,861,659 - -0.1
2,861,659 - -0.8
2,861,659 - +1.1
2,861,669 + -0.2
2,861,670 - -0.5
2,861,755 - -1.2
2,861,757 - +0.0
2,861,757 - -0.1
2,861,757 - +0.2
2,861,757 - +0.4
2,861,757 - +1.8
2,861,757 - +0.5
2,861,817 + +0.4
2,861,817 + +0.9
2,861,855 - -1.5
2,861,855 - +0.6
2,861,855 - +2.1
2,861,855 - +0.6
2,861,855 - +0.4
2,861,856 + +0.2
2,861,857 - +0.9
2,861,857 - +0.8
2,861,857 - -0.5
2,861,857 - +0.9
2,861,860 - -1.1
2,861,864 - +0.1
2,861,907 - -0.2
2,862,121 + -0.0
2,862,122 - -0.6
2,862,238 + -0.2
2,862,238 + -0.9
2,862,239 - -0.8
2,862,301 + +0.8
2,862,301 + -0.9
2,862,301 + +0.2
2,862,322 + +1.0
2,862,322 + -0.8
2,862,351 + +1.2
2,862,351 + -0.5
2,862,351 + -0.5
2,862,352 - -0.1
2,862,413 + ECD_02720 0.13 -1.0
2,862,414 - ECD_02720 0.13 +0.2
2,862,414 - ECD_02720 0.13 -0.3
2,862,464 - ECD_02720 0.16 +0.4
2,862,473 + ECD_02720 0.17 -1.7
2,862,474 - ECD_02720 0.17 -0.3
2,862,516 - ECD_02720 0.20 +0.1
2,862,516 - ECD_02720 0.20 -0.6
2,862,538 + ECD_02720 0.21 +0.1
2,862,550 + ECD_02720 0.22 +0.5
2,862,551 - ECD_02720 0.22 -0.8
2,862,628 + ECD_02720 0.28 +0.7
2,862,628 + ECD_02720 0.28 -0.4
2,862,629 - ECD_02720 0.28 +0.8
2,862,692 + ECD_02720 0.32 -0.6
2,862,692 + ECD_02720 0.32 +0.6
2,862,693 - ECD_02720 0.32 -0.1
2,862,693 - ECD_02720 0.32 +1.3
2,862,693 - ECD_02720 0.32 -0.2
2,862,698 + ECD_02720 0.32 -0.4
2,862,708 - ECD_02720 0.33 +0.2
2,862,708 - ECD_02720 0.33 +0.8
2,862,781 + ECD_02720 0.38 -0.2
2,862,781 + ECD_02720 0.38 +0.3
2,862,785 + ECD_02720 0.38 -0.7

Or see this region's nucleotide sequence