Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02687 and ECD_02688 overlap by 14 nucleotides ECD_02688 and ECD_02689 are separated by 128 nucleotides ECD_02689 and ECD_04282 are separated by 559 nucleotides
ECD_02687: ECD_02687 - transcriptional activator of lysA; autorepressor, at 2,817,303 to 2,818,238
_02687
ECD_02688: ECD_02688 - Asp/Glu_racemase family protein, at 2,818,225 to 2,818,917
_02688
ECD_02689: ECD_02689 - arabinose transporter, at 2,819,046 to 2,820,464
_02689
ECD_04282: ECD_04282 - IS150 hypothetical protein, at 2,821,024 to 2,821,545
_04282
Position (kb)
2819
2820
2821 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2818.048 kb on + strand, within ECD_02687 at 2818.054 kb on - strand, within ECD_02687 at 2818.054 kb on - strand, within ECD_02687 at 2818.054 kb on - strand, within ECD_02687 at 2818.089 kb on - strand, within ECD_02687 at 2818.089 kb on - strand, within ECD_02687 at 2818.160 kb on + strand at 2818.171 kb on + strand at 2818.171 kb on + strand at 2818.171 kb on + strand at 2818.171 kb on + strand at 2818.172 kb on - strand at 2818.172 kb on - strand at 2818.172 kb on - strand at 2818.211 kb on + strand at 2818.211 kb on + strand at 2818.212 kb on - strand at 2818.226 kb on + strand at 2818.236 kb on + strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.386 kb on - strand, within ECD_02688 at 2818.389 kb on - strand, within ECD_02688 at 2818.408 kb on - strand, within ECD_02688 at 2818.477 kb on - strand, within ECD_02688 at 2818.538 kb on + strand, within ECD_02688 at 2818.539 kb on - strand, within ECD_02688 at 2818.539 kb on - strand, within ECD_02688 at 2818.612 kb on + strand, within ECD_02688 at 2818.613 kb on - strand, within ECD_02688 at 2818.656 kb on + strand, within ECD_02688 at 2818.657 kb on - strand, within ECD_02688 at 2818.657 kb on - strand, within ECD_02688 at 2818.666 kb on - strand, within ECD_02688 at 2818.671 kb on + strand, within ECD_02688 at 2818.672 kb on - strand, within ECD_02688 at 2818.675 kb on + strand, within ECD_02688 at 2818.675 kb on + strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.683 kb on + strand, within ECD_02688 at 2818.683 kb on + strand, within ECD_02688 at 2818.684 kb on - strand, within ECD_02688 at 2818.684 kb on - strand, within ECD_02688 at 2818.705 kb on + strand, within ECD_02688 at 2818.743 kb on + strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.794 kb on + strand, within ECD_02688 at 2818.794 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.799 kb on - strand, within ECD_02688 at 2818.840 kb on - strand, within ECD_02688 at 2818.853 kb on - strand at 2818.853 kb on - strand at 2818.853 kb on - strand at 2818.862 kb on + strand at 2818.862 kb on + strand at 2818.865 kb on + strand at 2818.999 kb on + strand at 2819.000 kb on - strand at 2819.000 kb on - strand at 2819.023 kb on + strand at 2819.023 kb on + strand at 2819.023 kb on + strand at 2819.024 kb on - strand at 2819.024 kb on - strand at 2819.024 kb on - strand at 2819.096 kb on + strand at 2819.097 kb on - strand at 2819.097 kb on - strand at 2819.173 kb on + strand at 2819.240 kb on + strand, within ECD_02689 at 2819.273 kb on + strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.274 kb on - strand, within ECD_02689 at 2819.277 kb on - strand, within ECD_02689 at 2819.360 kb on + strand, within ECD_02689 at 2819.360 kb on + strand, within ECD_02689 at 2819.361 kb on - strand, within ECD_02689 at 2819.361 kb on - strand, within ECD_02689 at 2819.361 kb on - strand, within ECD_02689 at 2819.361 kb on - strand, within ECD_02689 at 2819.438 kb on - strand, within ECD_02689 at 2819.438 kb on - strand, within ECD_02689 at 2819.508 kb on - strand, within ECD_02689 at 2819.508 kb on - strand, within ECD_02689 at 2819.508 kb on - strand, within ECD_02689 at 2819.508 kb on - strand, within ECD_02689 at 2819.508 kb on - strand, within ECD_02689 at 2819.543 kb on + strand, within ECD_02689 at 2819.626 kb on + strand, within ECD_02689 at 2819.629 kb on + strand, within ECD_02689 at 2819.629 kb on + strand, within ECD_02689 at 2819.630 kb on - strand, within ECD_02689 at 2819.630 kb on - strand, within ECD_02689 at 2819.630 kb on - strand, within ECD_02689 at 2819.630 kb on - strand, within ECD_02689 at 2819.630 kb on - strand, within ECD_02689 at 2819.706 kb on - strand, within ECD_02689 at 2819.718 kb on - strand, within ECD_02689 at 2819.807 kb on + strand, within ECD_02689 at 2819.807 kb on + strand, within ECD_02689 at 2819.808 kb on - strand, within ECD_02689 at 2819.808 kb on - strand, within ECD_02689 at 2819.808 kb on - strand, within ECD_02689 at 2819.815 kb on - strand, within ECD_02689 at 2819.831 kb on + strand, within ECD_02689 at 2819.832 kb on - strand, within ECD_02689 at 2819.945 kb on + strand, within ECD_02689 at 2819.947 kb on + strand, within ECD_02689 at 2819.947 kb on + strand, within ECD_02689 at 2819.947 kb on + strand, within ECD_02689 at 2819.947 kb on + strand, within ECD_02689 at 2819.948 kb on - strand, within ECD_02689 at 2820.008 kb on - strand, within ECD_02689 at 2820.008 kb on - strand, within ECD_02689 at 2820.011 kb on + strand, within ECD_02689 at 2820.011 kb on + strand, within ECD_02689 at 2820.012 kb on - strand, within ECD_02689 at 2820.012 kb on - strand, within ECD_02689 at 2820.012 kb on - strand, within ECD_02689 at 2820.059 kb on - strand, within ECD_02689 at 2820.120 kb on + strand, within ECD_02689 at 2820.120 kb on + strand, within ECD_02689 at 2820.154 kb on - strand, within ECD_02689 at 2820.154 kb on - strand, within ECD_02689 at 2820.155 kb on + strand, within ECD_02689 at 2820.156 kb on - strand, within ECD_02689 at 2820.165 kb on + strand, within ECD_02689 at 2820.166 kb on - strand, within ECD_02689 at 2820.197 kb on - strand, within ECD_02689 at 2820.197 kb on - strand, within ECD_02689 at 2820.201 kb on - strand, within ECD_02689 at 2820.230 kb on + strand, within ECD_02689 at 2820.230 kb on + strand, within ECD_02689 at 2820.266 kb on + strand, within ECD_02689 at 2820.266 kb on + strand, within ECD_02689 at 2820.269 kb on + strand, within ECD_02689 at 2820.270 kb on - strand, within ECD_02689 at 2820.361 kb on - strand at 2820.361 kb on - strand at 2820.398 kb on + strand at 2820.398 kb on + strand at 2820.399 kb on - strand at 2820.399 kb on - strand at 2820.399 kb on - strand at 2820.399 kb on - strand at 2820.404 kb on + strand at 2820.404 kb on + strand at 2820.405 kb on - strand at 2820.455 kb on + strand at 2820.456 kb on - strand at 2820.456 kb on - strand at 2820.458 kb on + strand at 2820.459 kb on - strand at 2820.486 kb on - strand at 2820.681 kb on + strand at 2820.761 kb on - strand at 2820.814 kb on + strand at 2820.814 kb on + strand at 2820.815 kb on - strand at 2820.815 kb on - strand at 2820.815 kb on - strand at 2820.815 kb on - strand at 2820.815 kb on - strand at 2820.815 kb on - strand at 2820.828 kb on + strand at 2820.829 kb on - strand at 2820.926 kb on - strand at 2820.955 kb on + strand at 2820.956 kb on - strand at 2820.973 kb on - strand at 2821.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,818,048 + ECD_02687 0.80 -0.4 2,818,054 - ECD_02687 0.80 +0.7 2,818,054 - ECD_02687 0.80 -0.8 2,818,054 - ECD_02687 0.80 +1.5 2,818,089 - ECD_02687 0.84 -1.0 2,818,089 - ECD_02687 0.84 -0.2 2,818,160 + +0.3 2,818,171 + -0.8 2,818,171 + +0.3 2,818,171 + -0.2 2,818,171 + +1.4 2,818,172 - -0.6 2,818,172 - +0.5 2,818,172 - +0.3 2,818,211 + -0.7 2,818,211 + -0.9 2,818,212 - +1.1 2,818,226 + +1.1 2,818,236 + -1.3 2,818,237 - -0.9 2,818,237 - -0.8 2,818,237 - -0.2 2,818,237 - -0.3 2,818,237 - +0.2 2,818,386 - ECD_02688 0.23 +0.4 2,818,389 - ECD_02688 0.24 +0.6 2,818,408 - ECD_02688 0.26 -2.1 2,818,477 - ECD_02688 0.36 +0.1 2,818,538 + ECD_02688 0.45 -0.7 2,818,539 - ECD_02688 0.45 +0.4 2,818,539 - ECD_02688 0.45 -0.7 2,818,612 + ECD_02688 0.56 -0.5 2,818,613 - ECD_02688 0.56 +0.1 2,818,656 + ECD_02688 0.62 -0.7 2,818,657 - ECD_02688 0.62 -0.7 2,818,657 - ECD_02688 0.62 -1.9 2,818,666 - ECD_02688 0.64 -0.8 2,818,671 + ECD_02688 0.64 -1.1 2,818,672 - ECD_02688 0.65 +0.3 2,818,675 + ECD_02688 0.65 -0.1 2,818,675 + ECD_02688 0.65 -0.1 2,818,676 - ECD_02688 0.65 -0.1 2,818,676 - ECD_02688 0.65 -0.1 2,818,676 - ECD_02688 0.65 -0.6 2,818,676 - ECD_02688 0.65 +0.5 2,818,676 - ECD_02688 0.65 +0.1 2,818,676 - ECD_02688 0.65 +0.7 2,818,683 + ECD_02688 0.66 +0.0 2,818,683 + ECD_02688 0.66 +0.4 2,818,684 - ECD_02688 0.66 -1.2 2,818,684 - ECD_02688 0.66 +0.5 2,818,705 + ECD_02688 0.69 +0.6 2,818,743 + ECD_02688 0.75 +0.5 2,818,775 - ECD_02688 0.79 -0.5 2,818,775 - ECD_02688 0.79 -0.5 2,818,775 - ECD_02688 0.79 -0.9 2,818,775 - ECD_02688 0.79 +0.9 2,818,775 - ECD_02688 0.79 -1.9 2,818,794 + ECD_02688 0.82 -0.7 2,818,794 + ECD_02688 0.82 -0.7 2,818,798 + ECD_02688 0.83 -0.8 2,818,798 + ECD_02688 0.83 +1.2 2,818,798 + ECD_02688 0.83 -0.4 2,818,798 + ECD_02688 0.83 -0.4 2,818,799 - ECD_02688 0.83 -1.0 2,818,840 - ECD_02688 0.89 +0.3 2,818,853 - -0.5 2,818,853 - -0.3 2,818,853 - -0.4 2,818,862 + +0.1 2,818,862 + -1.1 2,818,865 + +0.2 2,818,999 + +0.3 2,819,000 - -0.4 2,819,000 - +1.5 2,819,023 + +0.6 2,819,023 + -0.5 2,819,023 + +0.9 2,819,024 - +0.3 2,819,024 - -0.7 2,819,024 - -0.3 2,819,096 + -0.9 2,819,097 - -0.1 2,819,097 - +0.6 2,819,173 + +0.8 2,819,240 + ECD_02689 0.14 +0.2 2,819,273 + ECD_02689 0.16 +0.3 2,819,274 - ECD_02689 0.16 +0.3 2,819,274 - ECD_02689 0.16 -0.1 2,819,274 - ECD_02689 0.16 -1.0 2,819,274 - ECD_02689 0.16 -0.2 2,819,274 - ECD_02689 0.16 +0.2 2,819,274 - ECD_02689 0.16 -0.5 2,819,274 - ECD_02689 0.16 -0.8 2,819,274 - ECD_02689 0.16 +0.3 2,819,274 - ECD_02689 0.16 -0.4 2,819,274 - ECD_02689 0.16 -0.1 2,819,277 - ECD_02689 0.16 -0.4 2,819,360 + ECD_02689 0.22 +1.5 2,819,360 + ECD_02689 0.22 -0.3 2,819,361 - ECD_02689 0.22 -0.1 2,819,361 - ECD_02689 0.22 +0.5 2,819,361 - ECD_02689 0.22 +0.0 2,819,361 - ECD_02689 0.22 -0.4 2,819,438 - ECD_02689 0.28 +0.6 2,819,438 - ECD_02689 0.28 +0.8 2,819,508 - ECD_02689 0.33 -0.2 2,819,508 - ECD_02689 0.33 +0.1 2,819,508 - ECD_02689 0.33 +0.8 2,819,508 - ECD_02689 0.33 -0.4 2,819,508 - ECD_02689 0.33 -1.4 2,819,543 + ECD_02689 0.35 -0.1 2,819,626 + ECD_02689 0.41 -0.3 2,819,629 + ECD_02689 0.41 +1.0 2,819,629 + ECD_02689 0.41 -0.1 2,819,630 - ECD_02689 0.41 +1.0 2,819,630 - ECD_02689 0.41 +0.4 2,819,630 - ECD_02689 0.41 +0.0 2,819,630 - ECD_02689 0.41 +0.8 2,819,630 - ECD_02689 0.41 +1.0 2,819,706 - ECD_02689 0.47 -0.2 2,819,718 - ECD_02689 0.47 -1.1 2,819,807 + ECD_02689 0.54 -1.1 2,819,807 + ECD_02689 0.54 -0.3 2,819,808 - ECD_02689 0.54 -0.3 2,819,808 - ECD_02689 0.54 +0.1 2,819,808 - ECD_02689 0.54 +0.2 2,819,815 - ECD_02689 0.54 -0.1 2,819,831 + ECD_02689 0.55 +0.3 2,819,832 - ECD_02689 0.55 +1.1 2,819,945 + ECD_02689 0.63 -0.0 2,819,947 + ECD_02689 0.63 -1.8 2,819,947 + ECD_02689 0.63 +1.0 2,819,947 + ECD_02689 0.63 +0.2 2,819,947 + ECD_02689 0.63 +1.2 2,819,948 - ECD_02689 0.64 -0.5 2,820,008 - ECD_02689 0.68 +0.3 2,820,008 - ECD_02689 0.68 -1.4 2,820,011 + ECD_02689 0.68 -0.2 2,820,011 + ECD_02689 0.68 -0.1 2,820,012 - ECD_02689 0.68 -0.4 2,820,012 - ECD_02689 0.68 -0.6 2,820,012 - ECD_02689 0.68 +0.5 2,820,059 - ECD_02689 0.71 -0.9 2,820,120 + ECD_02689 0.76 -1.4 2,820,120 + ECD_02689 0.76 +0.4 2,820,154 - ECD_02689 0.78 -0.9 2,820,154 - ECD_02689 0.78 -0.4 2,820,155 + ECD_02689 0.78 -0.1 2,820,156 - ECD_02689 0.78 +0.2 2,820,165 + ECD_02689 0.79 -0.1 2,820,166 - ECD_02689 0.79 -1.2 2,820,197 - ECD_02689 0.81 -0.9 2,820,197 - ECD_02689 0.81 +0.1 2,820,201 - ECD_02689 0.81 -0.8 2,820,230 + ECD_02689 0.83 -0.5 2,820,230 + ECD_02689 0.83 -0.4 2,820,266 + ECD_02689 0.86 +0.7 2,820,266 + ECD_02689 0.86 +2.5 2,820,269 + ECD_02689 0.86 -2.3 2,820,270 - ECD_02689 0.86 +0.1 2,820,361 - -0.3 2,820,361 - +0.0 2,820,398 + -0.6 2,820,398 + -1.9 2,820,399 - +0.1 2,820,399 - -0.2 2,820,399 - -0.6 2,820,399 - -0.9 2,820,404 + -0.1 2,820,404 + +0.3 2,820,405 - -0.2 2,820,455 + +0.6 2,820,456 - -0.1 2,820,456 - -0.9 2,820,458 + +1.4 2,820,459 - -0.3 2,820,486 - -0.1 2,820,681 + -0.3 2,820,761 - -0.3 2,820,814 + +0.4 2,820,814 + +0.8 2,820,815 - -0.3 2,820,815 - -0.6 2,820,815 - +1.1 2,820,815 - -0.6 2,820,815 - +1.2 2,820,815 - -0.3 2,820,828 + -0.1 2,820,829 - -0.1 2,820,926 - +1.7 2,820,955 + +1.5 2,820,956 - -0.7 2,820,973 - +0.9 2,821,014 - +0.6
Or see this region's nucleotide sequence