Strain Fitness in Escherichia coli BL21 around ECD_02389

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02387 and ECD_02388 are separated by 137 nucleotidesECD_02388 and ECD_02389 are separated by 49 nucleotidesECD_02389 and ECD_02390 are separated by 85 nucleotides ECD_02387: ECD_02387 - putative oxidoreductase, at 2,482,059 to 2,482,418 _02387 ECD_02388: ECD_02388 - ATPase regulatory factor involved in DnaA inactivation, at 2,482,556 to 2,483,302 _02388 ECD_02389: ECD_02389 - uracil permease, at 2,483,352 to 2,484,641 _02389 ECD_02390: ECD_02390 - uracil phosphoribosyltransferase, at 2,484,727 to 2,485,353 _02390 Position (kb) 2483 2484 2485Strain fitness (log2 ratio) -1 0 1at 2482.489 kb on + strandat 2482.490 kb on - strandat 2482.493 kb on - strandat 2482.499 kb on + strandat 2482.554 kb on - strandat 2483.353 kb on + strandat 2483.364 kb on + strandat 2483.564 kb on - strand, within ECD_02389at 2483.618 kb on - strand, within ECD_02389at 2483.741 kb on - strand, within ECD_02389at 2483.784 kb on - strand, within ECD_02389at 2483.899 kb on - strand, within ECD_02389at 2483.984 kb on + strand, within ECD_02389at 2484.018 kb on - strand, within ECD_02389at 2484.018 kb on - strand, within ECD_02389at 2484.439 kb on + strand, within ECD_02389at 2484.498 kb on + strand, within ECD_02389at 2484.505 kb on - strand, within ECD_02389at 2484.528 kb on + strandat 2484.642 kb on - strandat 2484.642 kb on - strandat 2484.645 kb on - strandat 2484.660 kb on - strandat 2484.712 kb on - strandat 2484.819 kb on - strand, within ECD_02390at 2484.859 kb on - strand, within ECD_02390at 2484.875 kb on - strand, within ECD_02390at 2484.875 kb on - strand, within ECD_02390at 2484.997 kb on - strand, within ECD_02390at 2484.997 kb on - strand, within ECD_02390at 2485.016 kb on + strand, within ECD_02390at 2485.017 kb on - strand, within ECD_02390at 2485.017 kb on - strand, within ECD_02390at 2485.050 kb on - strand, within ECD_02390at 2485.050 kb on - strand, within ECD_02390at 2485.050 kb on - strand, within ECD_02390at 2485.054 kb on - strand, within ECD_02390at 2485.108 kb on - strand, within ECD_02390at 2485.108 kb on - strand, within ECD_02390at 2485.233 kb on - strand, within ECD_02390at 2485.233 kb on - strand, within ECD_02390at 2485.233 kb on - strand, within ECD_02390

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,482,489 + +0.1
2,482,490 - -0.8
2,482,493 - +0.6
2,482,499 + +1.3
2,482,554 - -0.4
2,483,353 + +0.8
2,483,364 + +0.5
2,483,564 - ECD_02389 0.16 +0.5
2,483,618 - ECD_02389 0.21 +0.9
2,483,741 - ECD_02389 0.30 +0.9
2,483,784 - ECD_02389 0.33 +0.0
2,483,899 - ECD_02389 0.42 +0.3
2,483,984 + ECD_02389 0.49 +0.3
2,484,018 - ECD_02389 0.52 +1.5
2,484,018 - ECD_02389 0.52 +0.5
2,484,439 + ECD_02389 0.84 -0.1
2,484,498 + ECD_02389 0.89 -0.2
2,484,505 - ECD_02389 0.89 +1.2
2,484,528 + +1.6
2,484,642 - +0.9
2,484,642 - +0.2
2,484,645 - +0.9
2,484,660 - +0.4
2,484,712 - +0.2
2,484,819 - ECD_02390 0.15 +1.3
2,484,859 - ECD_02390 0.21 +0.7
2,484,875 - ECD_02390 0.24 +0.1
2,484,875 - ECD_02390 0.24 +0.3
2,484,997 - ECD_02390 0.43 +0.4
2,484,997 - ECD_02390 0.43 +0.3
2,485,016 + ECD_02390 0.46 +1.0
2,485,017 - ECD_02390 0.46 +0.4
2,485,017 - ECD_02390 0.46 -0.1
2,485,050 - ECD_02390 0.52 -0.0
2,485,050 - ECD_02390 0.52 +0.5
2,485,050 - ECD_02390 0.52 +0.6
2,485,054 - ECD_02390 0.52 +0.5
2,485,108 - ECD_02390 0.61 -0.2
2,485,108 - ECD_02390 0.61 +0.0
2,485,233 - ECD_02390 0.81 -0.1
2,485,233 - ECD_02390 0.81 -1.1
2,485,233 - ECD_02390 0.81 +0.6

Or see this region's nucleotide sequence