Strain Fitness in Escherichia coli BL21 around ECD_02187

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02184 and ECD_02185 overlap by 1 nucleotidesECD_02185 and ECD_02186 overlap by 7 nucleotidesECD_02186 and ECD_02187 are separated by 109 nucleotidesECD_02187 and ECD_02188 overlap by 4 nucleotidesECD_02188 and ECD_02189 overlap by 1 nucleotides ECD_02184: ECD_02184 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,262,731 to 2,263,066 _02184 ECD_02185: ECD_02185 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,263,066 to 2,263,452 _02185 ECD_02186: ECD_02186 - inactive two-component system connector protein, at 2,263,446 to 2,263,712 _02186 ECD_02187: ECD_02187 - O-succinylbenzoate-CoA ligase, at 2,263,822 to 2,265,177 _02187 ECD_02188: ECD_02188 - O-succinylbenzoyl-CoA synthase, at 2,265,174 to 2,266,136 _02188 ECD_02189: ECD_02189 - dihydroxynaphthoic acid synthetase, at 2,266,136 to 2,266,993 _02189 Position (kb) 2263 2264 2265 2266Strain fitness (log2 ratio) -1 0 1at 2263.499 kb on - strand, within ECD_02186at 2263.548 kb on - strand, within ECD_02186at 2263.656 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.719 kb on - strandat 2263.758 kb on - strandat 2263.764 kb on + strandat 2263.979 kb on + strand, within ECD_02187at 2263.980 kb on - strand, within ECD_02187at 2264.117 kb on - strand, within ECD_02187at 2264.524 kb on - strand, within ECD_02187at 2264.586 kb on - strand, within ECD_02187at 2264.711 kb on + strand, within ECD_02187at 2264.715 kb on + strand, within ECD_02187at 2264.715 kb on + strand, within ECD_02187at 2264.716 kb on - strand, within ECD_02187at 2264.716 kb on - strand, within ECD_02187at 2265.116 kb on - strandat 2265.330 kb on + strand, within ECD_02188at 2265.442 kb on - strand, within ECD_02188at 2265.608 kb on - strand, within ECD_02188at 2265.728 kb on - strand, within ECD_02188at 2265.768 kb on - strand, within ECD_02188at 2265.848 kb on + strand, within ECD_02188at 2265.849 kb on - strand, within ECD_02188at 2265.849 kb on - strand, within ECD_02188at 2265.932 kb on + strand, within ECD_02188at 2265.933 kb on - strand, within ECD_02188at 2266.046 kb on - strandat 2266.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
2,263,499 - ECD_02186 0.20 +1.5
2,263,548 - ECD_02186 0.38 +0.1
2,263,656 - ECD_02186 0.79 +0.1
2,263,660 - ECD_02186 0.80 +1.1
2,263,660 - ECD_02186 0.80 +1.3
2,263,660 - ECD_02186 0.80 +1.0
2,263,660 - ECD_02186 0.80 -0.6
2,263,660 - ECD_02186 0.80 +0.0
2,263,660 - ECD_02186 0.80 +0.0
2,263,660 - ECD_02186 0.80 +0.4
2,263,719 - +0.7
2,263,758 - +0.1
2,263,764 + +0.8
2,263,979 + ECD_02187 0.12 +0.6
2,263,980 - ECD_02187 0.12 +0.1
2,264,117 - ECD_02187 0.22 +0.4
2,264,524 - ECD_02187 0.52 +0.6
2,264,586 - ECD_02187 0.56 +0.7
2,264,711 + ECD_02187 0.66 +0.5
2,264,715 + ECD_02187 0.66 +1.4
2,264,715 + ECD_02187 0.66 +0.2
2,264,716 - ECD_02187 0.66 -0.3
2,264,716 - ECD_02187 0.66 -0.9
2,265,116 - +0.2
2,265,330 + ECD_02188 0.16 +0.9
2,265,442 - ECD_02188 0.28 +1.1
2,265,608 - ECD_02188 0.45 +0.3
2,265,728 - ECD_02188 0.58 +0.0
2,265,768 - ECD_02188 0.62 +1.0
2,265,848 + ECD_02188 0.70 +0.9
2,265,849 - ECD_02188 0.70 +0.8
2,265,849 - ECD_02188 0.70 +0.1
2,265,932 + ECD_02188 0.79 -0.1
2,265,933 - ECD_02188 0.79 -0.1
2,266,046 - +0.4
2,266,046 - +1.4

Or see this region's nucleotide sequence