Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01919 and ECD_04330 are separated by 129 nucleotides ECD_04330 and ECD_01920 are separated by 168 nucleotides ECD_01920 and ECD_01921 are separated by 145 nucleotides ECD_01921 and ECD_01922 are separated by 5 nucleotides
ECD_01919: ECD_01919 - putative epimerase, at 1,984,548 to 1,985,372
_01919
ECD_04330: ECD_04330 - toxin of the YoeB-YefM toxin-antitoxin system, at 1,985,502 to 1,985,630
_04330
ECD_01920: ECD_01920 - his operon leader peptide, at 1,985,799 to 1,985,849
_01920
ECD_01921: ECD_01921 - ATP phosphoribosyltransferase, at 1,985,995 to 1,986,894
_01921
ECD_01922: ECD_01922 - bifunctional histidinal dehydrogenase/ histidinol dehydrogenase, at 1,986,900 to 1,988,204
_01922
Position (kb)
1985
1986
1987 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1985.151 kb on - strand, within ECD_01919 at 1985.206 kb on - strand, within ECD_01919 at 1985.230 kb on + strand, within ECD_01919 at 1985.231 kb on - strand, within ECD_01919 at 1985.394 kb on + strand at 1985.395 kb on - strand at 1985.395 kb on - strand at 1985.401 kb on - strand at 1985.401 kb on - strand at 1985.403 kb on - strand at 1985.441 kb on - strand at 1985.623 kb on - strand at 1986.065 kb on + strand at 1986.085 kb on - strand, within ECD_01921 at 1986.556 kb on - strand, within ECD_01921 at 1986.609 kb on + strand, within ECD_01921 at 1986.676 kb on + strand, within ECD_01921 at 1986.929 kb on + strand at 1987.225 kb on + strand, within ECD_01922 at 1987.287 kb on + strand, within ECD_01922 at 1987.590 kb on + strand, within ECD_01922 at 1987.829 kb on + strand, within ECD_01922
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,985,151 - ECD_01919 0.73 -0.7 1,985,206 - ECD_01919 0.80 +0.1 1,985,230 + ECD_01919 0.83 +0.0 1,985,231 - ECD_01919 0.83 +1.0 1,985,394 + -0.1 1,985,395 - -0.7 1,985,395 - -0.4 1,985,401 - +0.2 1,985,401 - -1.2 1,985,403 - -0.6 1,985,441 - +0.6 1,985,623 - -0.8 1,986,065 + +0.2 1,986,085 - ECD_01921 0.10 -0.9 1,986,556 - ECD_01921 0.62 -1.2 1,986,609 + ECD_01921 0.68 -1.0 1,986,676 + ECD_01921 0.76 -0.1 1,986,929 + +0.4 1,987,225 + ECD_01922 0.25 -2.2 1,987,287 + ECD_01922 0.30 +0.0 1,987,590 + ECD_01922 0.53 +1.8 1,987,829 + ECD_01922 0.71 +0.5
Or see this region's nucleotide sequence