Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01755 and ECD_01756 are separated by 42 nucleotides ECD_01756 and ECD_01757 are separated by 0 nucleotides ECD_01757 and ECD_01758 are separated by 169 nucleotides ECD_01758 and ECD_01759 overlap by 44 nucleotides ECD_01759 and ECD_01760 are separated by 96 nucleotides
ECD_01755: ECD_01755 - putative diguanylate cyclase, at 1,816,418 to 1,817,908
_01755
ECD_01756: ECD_01756 - aminoacyl-tRNA editing domain protein, at 1,817,951 to 1,818,454
_01756
ECD_01757: ECD_01757 - uncharacterized protein, at 1,818,455 to 1,818,559
_01757
ECD_01758: ECD_01758 - UPF0756 family putative inner membrane protein, at 1,818,729 to 1,819,175
_01758
ECD_01759: ECD_01759 - putative DNA-binding transcriptional regulator, at 1,819,132 to 1,819,953
_01759
ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231
_01760
Position (kb) 1818
1819
1820 Strain fitness (log2 ratio) -1
0
1
2 at 1818.456 kb on + strand at 1818.456 kb on + strand at 1818.457 kb on - strand at 1819.190 kb on + strand at 1819.325 kb on - strand, within ECD_01759 at 1819.885 kb on - strand at 1820.004 kb on + strand at 1820.049 kb on + strand at 1820.050 kb on - strand at 1820.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,818,456 + +0.9 1,818,456 + +0.2 1,818,457 - -0.2 1,819,190 + +0.3 1,819,325 - ECD_01759 0.23 +0.8 1,819,885 - +0.2 1,820,004 + +2.1 1,820,049 + -0.8 1,820,050 - +0.2 1,820,050 - +0.4
Or see this region's nucleotide sequence