Strain Fitness in Escherichia coli BL21 around ECD_01752

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01751 and ECD_01752 are separated by 561 nucleotidesECD_01752 and ECD_01753 are separated by 112 nucleotides ECD_01751: ECD_01751 - scaffolding protein for murein synthesizing machinery, at 1,810,103 to 1,810,849 _01751 ECD_01752: ECD_01752 - protein kinase, endogenous substrate unidentified; autokinase, at 1,811,411 to 1,813,219 _01752 ECD_01753: ECD_01753 - UPF0229 family protein, at 1,813,332 to 1,814,615 _01753 Position (kb) 1811 1812 1813 1814Strain fitness (log2 ratio) -1 0 1at 1810.507 kb on - strand, within ECD_01751at 1810.535 kb on - strand, within ECD_01751at 1810.535 kb on - strand, within ECD_01751at 1810.645 kb on - strand, within ECD_01751at 1810.690 kb on - strand, within ECD_01751at 1810.735 kb on - strand, within ECD_01751at 1810.755 kb on - strand, within ECD_01751at 1810.944 kb on + strandat 1811.112 kb on - strandat 1811.131 kb on + strandat 1811.238 kb on + strandat 1811.707 kb on + strand, within ECD_01752at 1812.135 kb on - strand, within ECD_01752at 1812.179 kb on - strand, within ECD_01752at 1812.179 kb on - strand, within ECD_01752at 1812.446 kb on + strand, within ECD_01752at 1812.720 kb on - strand, within ECD_01752at 1812.800 kb on + strand, within ECD_01752at 1813.142 kb on - strandat 1813.298 kb on - strandat 1813.317 kb on + strandat 1813.321 kb on - strandat 1813.775 kb on + strand, within ECD_01753

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,810,507 - ECD_01751 0.54 +0.1
1,810,535 - ECD_01751 0.58 +0.4
1,810,535 - ECD_01751 0.58 -0.1
1,810,645 - ECD_01751 0.73 +1.1
1,810,690 - ECD_01751 0.79 +0.0
1,810,735 - ECD_01751 0.85 +0.1
1,810,755 - ECD_01751 0.87 +0.2
1,810,944 + -0.5
1,811,112 - -1.1
1,811,131 + -0.5
1,811,238 + -1.1
1,811,707 + ECD_01752 0.16 -0.8
1,812,135 - ECD_01752 0.40 -0.1
1,812,179 - ECD_01752 0.42 -0.1
1,812,179 - ECD_01752 0.42 -1.1
1,812,446 + ECD_01752 0.57 -1.0
1,812,720 - ECD_01752 0.72 +0.3
1,812,800 + ECD_01752 0.77 -0.4
1,813,142 - -0.9
1,813,298 - +0.8
1,813,317 + +1.5
1,813,321 - -0.0
1,813,775 + ECD_01753 0.35 +0.1

Or see this region's nucleotide sequence