Strain Fitness in Escherichia coli BL21 around ECD_01218

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01217 and ECD_01218 are separated by 85 nucleotidesECD_01218 and ECD_01219 are separated by 14 nucleotidesECD_01219 and ECD_01220 are separated by 11 nucleotides ECD_01217: ECD_01217 - oligopeptide ABC transporter periplasmic binding protein, at 1,286,774 to 1,288,405 _01217 ECD_01218: ECD_01218 - oligopeptide ABC transporter permease, at 1,288,491 to 1,289,411 _01218 ECD_01219: ECD_01219 - oligopeptide ABC transporter permease, at 1,289,426 to 1,290,334 _01219 ECD_01220: ECD_01220 - oligopeptide ABC transporter ATPase, at 1,290,346 to 1,291,359 _01220 Position (kb) 1288 1289 1290Strain fitness (log2 ratio) -1 0 1at 1287.519 kb on - strand, within ECD_01217at 1287.519 kb on - strand, within ECD_01217at 1287.671 kb on + strand, within ECD_01217at 1287.944 kb on + strand, within ECD_01217at 1287.946 kb on + strand, within ECD_01217at 1288.174 kb on + strand, within ECD_01217at 1288.174 kb on + strand, within ECD_01217at 1288.174 kb on + strand, within ECD_01217at 1288.298 kb on + strandat 1288.301 kb on + strandat 1288.369 kb on + strandat 1288.369 kb on + strandat 1288.412 kb on + strandat 1288.412 kb on + strandat 1288.547 kb on + strandat 1288.565 kb on + strandat 1289.152 kb on + strand, within ECD_01218at 1289.164 kb on + strand, within ECD_01218at 1289.231 kb on + strand, within ECD_01218at 1289.317 kb on + strand, within ECD_01218at 1289.377 kb on + strandat 1289.377 kb on + strandat 1289.377 kb on + strandat 1289.524 kb on + strand, within ECD_01219at 1289.731 kb on + strand, within ECD_01219at 1289.731 kb on + strand, within ECD_01219at 1289.968 kb on + strand, within ECD_01219

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,287,519 - ECD_01217 0.46 -0.9
1,287,519 - ECD_01217 0.46 +0.8
1,287,671 + ECD_01217 0.55 -0.5
1,287,944 + ECD_01217 0.72 -0.9
1,287,946 + ECD_01217 0.72 +0.1
1,288,174 + ECD_01217 0.86 +0.2
1,288,174 + ECD_01217 0.86 -0.1
1,288,174 + ECD_01217 0.86 -0.0
1,288,298 + +0.1
1,288,301 + -1.4
1,288,369 + +0.6
1,288,369 + +0.2
1,288,412 + +0.8
1,288,412 + +0.6
1,288,547 + -0.8
1,288,565 + +0.2
1,289,152 + ECD_01218 0.72 +0.7
1,289,164 + ECD_01218 0.73 -0.6
1,289,231 + ECD_01218 0.80 -0.2
1,289,317 + ECD_01218 0.90 +1.5
1,289,377 + +0.9
1,289,377 + +1.5
1,289,377 + -0.5
1,289,524 + ECD_01219 0.11 +0.5
1,289,731 + ECD_01219 0.34 +1.4
1,289,731 + ECD_01219 0.34 -0.1
1,289,968 + ECD_01219 0.60 +0.0

Or see this region's nucleotide sequence