Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01217 and ECD_01218 are separated by 85 nucleotides ECD_01218 and ECD_01219 are separated by 14 nucleotides ECD_01219 and ECD_01220 are separated by 11 nucleotides
ECD_01217: ECD_01217 - oligopeptide ABC transporter periplasmic binding protein, at 1,286,774 to 1,288,405
_01217
ECD_01218: ECD_01218 - oligopeptide ABC transporter permease, at 1,288,491 to 1,289,411
_01218
ECD_01219: ECD_01219 - oligopeptide ABC transporter permease, at 1,289,426 to 1,290,334
_01219
ECD_01220: ECD_01220 - oligopeptide ABC transporter ATPase, at 1,290,346 to 1,291,359
_01220
Position (kb)
1288
1289
1290 Strain fitness (log2 ratio)
-1
0
1 at 1287.519 kb on - strand, within ECD_01217 at 1287.519 kb on - strand, within ECD_01217 at 1287.671 kb on + strand, within ECD_01217 at 1287.944 kb on + strand, within ECD_01217 at 1287.946 kb on + strand, within ECD_01217 at 1288.174 kb on + strand, within ECD_01217 at 1288.174 kb on + strand, within ECD_01217 at 1288.174 kb on + strand, within ECD_01217 at 1288.298 kb on + strand at 1288.301 kb on + strand at 1288.369 kb on + strand at 1288.369 kb on + strand at 1288.412 kb on + strand at 1288.412 kb on + strand at 1288.547 kb on + strand at 1288.565 kb on + strand at 1289.152 kb on + strand, within ECD_01218 at 1289.164 kb on + strand, within ECD_01218 at 1289.231 kb on + strand, within ECD_01218 at 1289.317 kb on + strand, within ECD_01218 at 1289.377 kb on + strand at 1289.377 kb on + strand at 1289.377 kb on + strand at 1289.524 kb on + strand, within ECD_01219 at 1289.731 kb on + strand, within ECD_01219 at 1289.731 kb on + strand, within ECD_01219 at 1289.968 kb on + strand, within ECD_01219
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,287,519 - ECD_01217 0.46 -0.9 1,287,519 - ECD_01217 0.46 +0.8 1,287,671 + ECD_01217 0.55 -0.5 1,287,944 + ECD_01217 0.72 -0.9 1,287,946 + ECD_01217 0.72 +0.1 1,288,174 + ECD_01217 0.86 +0.2 1,288,174 + ECD_01217 0.86 -0.1 1,288,174 + ECD_01217 0.86 -0.0 1,288,298 + +0.1 1,288,301 + -1.4 1,288,369 + +0.6 1,288,369 + +0.2 1,288,412 + +0.8 1,288,412 + +0.6 1,288,547 + -0.8 1,288,565 + +0.2 1,289,152 + ECD_01218 0.72 +0.7 1,289,164 + ECD_01218 0.73 -0.6 1,289,231 + ECD_01218 0.80 -0.2 1,289,317 + ECD_01218 0.90 +1.5 1,289,377 + +0.9 1,289,377 + +1.5 1,289,377 + -0.5 1,289,524 + ECD_01219 0.11 +0.5 1,289,731 + ECD_01219 0.34 +1.4 1,289,731 + ECD_01219 0.34 -0.1 1,289,968 + ECD_01219 0.60 +0.0
Or see this region's nucleotide sequence