Strain Fitness in Escherichia coli BL21 around ECD_00379

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00377 and ECD_00378 overlap by 17 nucleotidesECD_00378 and ECD_00379 are separated by 118 nucleotidesECD_00379 and ECD_00380 are separated by 11 nucleotidesECD_00380 and ECD_00381 overlap by 1 nucleotidesECD_00381 and ECD_00382 overlap by 11 nucleotides ECD_00377: ECD_00377 - putative acetyltransferase, at 413,475 to 414,017 _00377 ECD_00378: ECD_00378 - hypothetical protein, at 414,001 to 414,378 _00378 ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387 _00379 ECD_00380: ECD_00380 - cytochrome o ubiquinol oxidase subunit IV, at 415,399 to 415,728 _00380 ECD_00381: ECD_00381 - cytochrome o ubiquinol oxidase subunit III, at 415,728 to 416,342 _00381 ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323 _00382 Position (kb) 414 415 416Strain fitness (log2 ratio) -2 -1 0 1at 413.515 kb on - strandat 413.515 kb on - strandat 413.613 kb on - strand, within ECD_00377at 413.840 kb on + strand, within ECD_00377at 413.966 kb on - strandat 413.970 kb on - strandat 413.994 kb on - strandat 414.313 kb on + strand, within ECD_00378at 414.329 kb on - strand, within ECD_00378at 414.368 kb on - strandat 414.438 kb on - strandat 414.457 kb on - strandat 414.471 kb on - strandat 414.520 kb on + strandat 414.632 kb on - strand, within ECD_00379at 414.653 kb on + strand, within ECD_00379at 414.690 kb on + strand, within ECD_00379at 414.690 kb on + strand, within ECD_00379at 414.691 kb on - strand, within ECD_00379at 414.694 kb on + strand, within ECD_00379at 414.695 kb on - strand, within ECD_00379at 414.695 kb on - strand, within ECD_00379at 414.751 kb on + strand, within ECD_00379at 414.753 kb on + strand, within ECD_00379at 414.791 kb on + strand, within ECD_00379at 414.856 kb on - strand, within ECD_00379at 415.008 kb on + strand, within ECD_00379at 415.008 kb on + strand, within ECD_00379at 415.009 kb on - strand, within ECD_00379at 415.017 kb on + strand, within ECD_00379at 415.018 kb on - strand, within ECD_00379at 415.018 kb on - strand, within ECD_00379at 415.029 kb on + strand, within ECD_00379at 415.030 kb on - strand, within ECD_00379at 415.094 kb on - strand, within ECD_00379at 415.213 kb on - strand, within ECD_00379at 415.266 kb on + strand, within ECD_00379at 415.271 kb on - strand, within ECD_00379at 415.379 kb on - strandat 415.401 kb on - strandat 415.401 kb on - strandat 415.401 kb on - strandat 415.419 kb on - strandat 415.419 kb on - strandat 415.419 kb on - strandat 415.419 kb on - strandat 415.451 kb on - strand, within ECD_00380at 415.716 kb on + strandat 415.716 kb on + strandat 415.729 kb on + strandat 415.730 kb on - strandat 415.730 kb on - strandat 415.858 kb on - strand, within ECD_00381at 416.049 kb on - strand, within ECD_00381at 416.071 kb on + strand, within ECD_00381at 416.072 kb on - strand, within ECD_00381at 416.072 kb on - strand, within ECD_00381at 416.096 kb on - strand, within ECD_00381at 416.162 kb on + strand, within ECD_00381at 416.204 kb on - strand, within ECD_00381at 416.204 kb on - strand, within ECD_00381at 416.207 kb on + strand, within ECD_00381at 416.207 kb on + strand, within ECD_00381at 416.207 kb on + strand, within ECD_00381at 416.208 kb on - strand, within ECD_00381at 416.330 kb on + strandat 416.358 kb on + strandat 416.359 kb on - strandat 416.361 kb on + strandat 416.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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413,515 - -0.2
413,515 - -0.0
413,613 - ECD_00377 0.25 -0.3
413,840 + ECD_00377 0.67 -1.8
413,966 - +0.9
413,970 - -0.7
413,994 - -0.4
414,313 + ECD_00378 0.83 +1.4
414,329 - ECD_00378 0.87 -1.2
414,368 - -0.3
414,438 - -0.6
414,457 - -0.2
414,471 - +0.2
414,520 + +0.2
414,632 - ECD_00379 0.15 +0.3
414,653 + ECD_00379 0.18 +0.1
414,690 + ECD_00379 0.22 -1.2
414,690 + ECD_00379 0.22 +0.8
414,691 - ECD_00379 0.22 -0.3
414,694 + ECD_00379 0.22 -2.4
414,695 - ECD_00379 0.22 -0.4
414,695 - ECD_00379 0.22 -0.1
414,751 + ECD_00379 0.29 -0.5
414,753 + ECD_00379 0.29 +0.7
414,791 + ECD_00379 0.33 -0.9
414,856 - ECD_00379 0.40 -0.0
415,008 + ECD_00379 0.57 -0.1
415,008 + ECD_00379 0.57 -0.2
415,009 - ECD_00379 0.57 +0.3
415,017 + ECD_00379 0.58 -0.3
415,018 - ECD_00379 0.58 -0.5
415,018 - ECD_00379 0.58 -1.4
415,029 + ECD_00379 0.60 +1.1
415,030 - ECD_00379 0.60 -0.3
415,094 - ECD_00379 0.67 -0.6
415,213 - ECD_00379 0.80 +0.3
415,266 + ECD_00379 0.86 -0.0
415,271 - ECD_00379 0.87 +0.4
415,379 - +0.1
415,401 - -0.7
415,401 - +0.3
415,401 - +0.5
415,419 - -0.1
415,419 - -0.2
415,419 - -1.0
415,419 - +0.1
415,451 - ECD_00380 0.16 -1.1
415,716 + -0.6
415,716 + +0.4
415,729 + -0.3
415,730 - -0.4
415,730 - +0.6
415,858 - ECD_00381 0.21 +0.9
416,049 - ECD_00381 0.52 +0.3
416,071 + ECD_00381 0.56 +1.4
416,072 - ECD_00381 0.56 +0.3
416,072 - ECD_00381 0.56 -1.1
416,096 - ECD_00381 0.60 -0.4
416,162 + ECD_00381 0.71 -0.9
416,204 - ECD_00381 0.77 -0.5
416,204 - ECD_00381 0.77 -0.2
416,207 + ECD_00381 0.78 +0.9
416,207 + ECD_00381 0.78 -0.1
416,207 + ECD_00381 0.78 +0.2
416,208 - ECD_00381 0.78 -0.7
416,330 + +0.4
416,358 + +0.2
416,359 - -0.1
416,361 + +0.2
416,362 - -0.6

Or see this region's nucleotide sequence