Strain Fitness in Escherichia coli BL21 around ECD_00355

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00354 and ECD_00355 are separated by 22 nucleotidesECD_00355 and ECD_00356 are separated by 27 nucleotides ECD_00354: ECD_00354 - tRNA-guanine transglycosylase, at 391,539 to 392,666 _00354 ECD_00355: ECD_00355 - SecYEG protein translocase auxillary subunit, at 392,689 to 393,021 _00355 ECD_00356: ECD_00356 - SecYEG protein translocase auxillary subunit, at 393,049 to 394,896 _00356 Position (kb) 392 393 394Strain fitness (log2 ratio) -2 -1 0 1at 391.844 kb on + strand, within ECD_00354at 391.974 kb on - strand, within ECD_00354at 392.119 kb on + strand, within ECD_00354at 392.207 kb on + strand, within ECD_00354at 392.230 kb on + strand, within ECD_00354at 392.230 kb on + strand, within ECD_00354at 392.230 kb on + strand, within ECD_00354at 392.409 kb on + strand, within ECD_00354at 392.411 kb on + strand, within ECD_00354at 392.411 kb on + strand, within ECD_00354at 392.451 kb on + strand, within ECD_00354at 392.451 kb on + strand, within ECD_00354at 392.478 kb on + strand, within ECD_00354at 392.478 kb on + strand, within ECD_00354at 392.550 kb on + strand, within ECD_00354at 392.644 kb on + strandat 392.644 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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391,844 + ECD_00354 0.27 -1.3
391,974 - ECD_00354 0.39 +0.2
392,119 + ECD_00354 0.51 -2.0
392,207 + ECD_00354 0.59 +0.8
392,230 + ECD_00354 0.61 -1.4
392,230 + ECD_00354 0.61 +0.8
392,230 + ECD_00354 0.61 -1.4
392,409 + ECD_00354 0.77 -1.0
392,411 + ECD_00354 0.77 -0.6
392,411 + ECD_00354 0.77 -1.0
392,451 + ECD_00354 0.81 -0.4
392,451 + ECD_00354 0.81 -1.5
392,478 + ECD_00354 0.83 +0.7
392,478 + ECD_00354 0.83 +0.4
392,550 + ECD_00354 0.90 +0.1
392,644 + -0.7
392,644 + +0.2

Or see this region's nucleotide sequence