Strain Fitness in Escherichia coli BL21 around ECD_00310

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00309 and ECD_00310 are separated by 92 nucleotidesECD_00310 and ECD_00311 are separated by 34 nucleotidesECD_00311 and ECD_00312 are separated by 185 nucleotides ECD_00309: ECD_00309 - S-formylglutathione hydrolase, at 346,872 to 347,705 _00309 ECD_00310: ECD_00310 - alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase, at 347,798 to 348,907 _00310 ECD_00311: ECD_00311 - regulator protein that represses frmRAB operon, at 348,942 to 349,217 _00311 ECD_00312: ECD_00312 - outer membrane protein, at 349,403 to 350,176 _00312 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2 3at 346.868 kb on - strandat 346.880 kb on + strandat 346.908 kb on - strandat 346.937 kb on - strandat 347.114 kb on - strand, within ECD_00309at 347.146 kb on + strand, within ECD_00309at 347.221 kb on + strand, within ECD_00309at 347.221 kb on + strand, within ECD_00309at 347.322 kb on + strand, within ECD_00309at 347.323 kb on - strand, within ECD_00309at 347.346 kb on - strand, within ECD_00309at 347.347 kb on + strand, within ECD_00309at 347.348 kb on - strand, within ECD_00309at 347.354 kb on - strand, within ECD_00309at 347.362 kb on + strand, within ECD_00309at 347.399 kb on - strand, within ECD_00309at 347.483 kb on + strand, within ECD_00309at 347.483 kb on + strand, within ECD_00309at 347.522 kb on + strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.647 kb on + strandat 347.713 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.757 kb on - strandat 347.784 kb on - strandat 347.785 kb on + strandat 347.879 kb on - strandat 347.879 kb on - strandat 347.879 kb on - strandat 348.130 kb on + strand, within ECD_00310at 348.361 kb on + strand, within ECD_00310at 348.362 kb on - strand, within ECD_00310at 348.477 kb on + strand, within ECD_00310at 348.478 kb on - strand, within ECD_00310at 348.505 kb on - strand, within ECD_00310at 348.510 kb on + strand, within ECD_00310at 348.645 kb on + strand, within ECD_00310at 348.773 kb on - strand, within ECD_00310at 348.773 kb on - strand, within ECD_00310at 348.811 kb on + strandat 349.007 kb on - strand, within ECD_00311at 349.105 kb on - strand, within ECD_00311at 349.246 kb on - strandat 349.288 kb on - strandat 349.291 kb on - strandat 349.445 kb on - strandat 349.445 kb on - strandat 349.498 kb on + strand, within ECD_00312at 349.499 kb on - strand, within ECD_00312at 349.610 kb on + strand, within ECD_00312at 349.611 kb on - strand, within ECD_00312at 349.618 kb on + strand, within ECD_00312at 349.666 kb on + strand, within ECD_00312at 349.667 kb on - strand, within ECD_00312at 349.668 kb on + strand, within ECD_00312at 349.669 kb on - strand, within ECD_00312at 349.672 kb on + strand, within ECD_00312at 349.673 kb on - strand, within ECD_00312at 349.705 kb on - strand, within ECD_00312at 349.732 kb on + strand, within ECD_00312at 349.735 kb on - strand, within ECD_00312at 349.735 kb on - strand, within ECD_00312at 349.742 kb on + strand, within ECD_00312at 349.779 kb on + strand, within ECD_00312at 349.783 kb on - strand, within ECD_00312at 349.841 kb on - strand, within ECD_00312at 349.877 kb on - strand, within ECD_00312

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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346,868 - +0.5
346,880 + +1.1
346,908 - -0.1
346,937 - +0.6
347,114 - ECD_00309 0.29 +0.1
347,146 + ECD_00309 0.33 +0.6
347,221 + ECD_00309 0.42 +1.0
347,221 + ECD_00309 0.42 -0.3
347,322 + ECD_00309 0.54 -0.3
347,323 - ECD_00309 0.54 -0.2
347,346 - ECD_00309 0.57 +1.1
347,347 + ECD_00309 0.57 -1.2
347,348 - ECD_00309 0.57 +1.2
347,354 - ECD_00309 0.58 +0.5
347,362 + ECD_00309 0.59 +0.7
347,399 - ECD_00309 0.63 -0.5
347,483 + ECD_00309 0.73 +0.3
347,483 + ECD_00309 0.73 +0.8
347,522 + ECD_00309 0.78 +0.1
347,567 - ECD_00309 0.83 +0.7
347,567 - ECD_00309 0.83 -0.7
347,567 - ECD_00309 0.83 +0.5
347,567 - ECD_00309 0.83 +1.9
347,647 + -0.5
347,713 + -0.4
347,756 + +0.2
347,756 + +0.6
347,756 + +0.8
347,756 + +1.1
347,756 + -0.3
347,757 - -1.2
347,784 - +0.3
347,785 + +0.2
347,879 - -0.3
347,879 - -0.7
347,879 - +0.6
348,130 + ECD_00310 0.30 +0.9
348,361 + ECD_00310 0.51 +0.2
348,362 - ECD_00310 0.51 +1.4
348,477 + ECD_00310 0.61 -0.3
348,478 - ECD_00310 0.61 +0.7
348,505 - ECD_00310 0.64 -0.2
348,510 + ECD_00310 0.64 +0.2
348,645 + ECD_00310 0.76 -0.6
348,773 - ECD_00310 0.88 +0.4
348,773 - ECD_00310 0.88 +0.3
348,811 + +0.4
349,007 - ECD_00311 0.24 +0.3
349,105 - ECD_00311 0.59 +0.0
349,246 - +0.5
349,288 - +1.2
349,291 - +1.0
349,445 - +1.6
349,445 - +0.3
349,498 + ECD_00312 0.12 +2.8
349,499 - ECD_00312 0.12 +1.9
349,610 + ECD_00312 0.27 -0.1
349,611 - ECD_00312 0.27 -2.5
349,618 + ECD_00312 0.28 +0.3
349,666 + ECD_00312 0.34 +0.8
349,667 - ECD_00312 0.34 +1.4
349,668 + ECD_00312 0.34 -0.7
349,669 - ECD_00312 0.34 +0.7
349,672 + ECD_00312 0.35 -0.3
349,673 - ECD_00312 0.35 +0.7
349,705 - ECD_00312 0.39 +1.2
349,732 + ECD_00312 0.43 +1.0
349,735 - ECD_00312 0.43 +1.1
349,735 - ECD_00312 0.43 -0.1
349,742 + ECD_00312 0.44 +0.8
349,779 + ECD_00312 0.49 -2.3
349,783 - ECD_00312 0.49 -1.4
349,841 - ECD_00312 0.57 +0.4
349,877 - ECD_00312 0.61 +0.1

Or see this region's nucleotide sequence