Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS24670

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
1,832,532	+		RPSI07_RS06875	0.70	+0.1
1,832,533	+		RPSI07_RS06875	0.70	-1.7
1,832,533	+		RPSI07_RS06875	0.70	-1.3
1,832,533	+		RPSI07_RS06875	0.70	-2.9
1,832,533	+		RPSI07_RS06875	0.70	-2.8
1,832,533	+		RPSI07_RS06875	0.70	-0.8
1,832,533	+		RPSI07_RS06875	0.70	-3.6
1,832,533	+		RPSI07_RS06875	0.70	-2.5
1,832,533	+		RPSI07_RS06875	0.70	-3.6
1,832,534	-		RPSI07_RS06875	0.71	+0.4
1,832,534	-		RPSI07_RS06875	0.71	-1.3
1,832,534	-		RPSI07_RS06875	0.71	-1.5
1,832,534	-		RPSI07_RS06875	0.71	-3.8
1,832,534	-		RPSI07_RS06875	0.71	+0.1
1,832,534	-		RPSI07_RS06875	0.71	+1.6
1,832,534	-		RPSI07_RS06875	0.71	-1.1
1,832,534	-		RPSI07_RS06875	0.71	-0.6
1,832,534	-		RPSI07_RS06875	0.71	-0.3
1,832,534	-		RPSI07_RS06875	0.71	+2.7
1,832,534	-		RPSI07_RS06875	0.71	+0.2
1,832,534	-		RPSI07_RS06875	0.71	+0.5
1,832,587	+		RPSI07_RS06875	0.77	-1.5
1,832,587	+		RPSI07_RS06875	0.77	-3.5
1,832,587	+		RPSI07_RS06875	0.77	-2.5
1,832,587	+		RPSI07_RS06875	0.77	-4.7
1,832,587	+		RPSI07_RS06875	0.77	+1.7
1,832,587	+		RPSI07_RS06875	0.77	+2.7
1,832,588	-		RPSI07_RS06875	0.77	+3.4
1,832,588	-		RPSI07_RS06875	0.77	+2.7
1,832,588	-		RPSI07_RS06875	0.77	+0.2
1,832,588	-		RPSI07_RS06875	0.77	+1.8
1,832,588	-		RPSI07_RS06875	0.77	-2.5
1,832,588	-		RPSI07_RS06875	0.77	+0.7
1,832,588	-		RPSI07_RS06875	0.77	+1.1
1,832,588	-		RPSI07_RS06875	0.77	+1.4
1,832,588	-		RPSI07_RS06875	0.77	+1.5
1,832,588	-		RPSI07_RS06875	0.77	-1.8
1,832,588	-		RPSI07_RS06875	0.77	+2.7
1,832,596	+		RPSI07_RS06875	0.78	-0.2
1,832,596	+		RPSI07_RS06875	0.78	-2.5
1,832,596	+		RPSI07_RS06875	0.78	-2.6
1,832,596	+		RPSI07_RS06875	0.78	-2.4
1,832,596	+		RPSI07_RS06875	0.78	-2.5
1,832,596	+		RPSI07_RS06875	0.78	-3.2
1,832,596	+		RPSI07_RS06875	0.78	-2.3
1,832,597	-		RPSI07_RS06875	0.78	+1.4
1,832,597	-		RPSI07_RS06875	0.78	-3.2
1,832,638	+		RPSI07_RS06875	0.82	+1.0
1,832,638	+		RPSI07_RS06875	0.82	-1.9
1,832,638	+		RPSI07_RS06875	0.82	-2.9
1,832,638	+		RPSI07_RS06875	0.82	-1.8
1,832,638	+		RPSI07_RS06875	0.82	-1.4
1,832,638	+		RPSI07_RS06875	0.82	-3.3
1,832,639	-		RPSI07_RS06875	0.82	+1.7
1,832,639	-		RPSI07_RS06875	0.82	-0.8
1,832,639	-		RPSI07_RS06875	0.82	-2.7
1,832,639	-		RPSI07_RS06875	0.82	-3.1
1,832,639	-		RPSI07_RS06875	0.82	+0.1
1,832,684	+		RPSI07_RS06875	0.88	-1.1
1,832,684	+		RPSI07_RS06875	0.88	+0.7
1,832,684	+		RPSI07_RS06875	0.88	-0.9
1,832,684	+		RPSI07_RS06875	0.88	+2.7
1,832,684	+		RPSI07_RS06875	0.88	-4.0
1,832,684	+		RPSI07_RS06875	0.88	+1.1
1,832,684	+		RPSI07_RS06875	0.88	-2.7
1,832,685	-		RPSI07_RS06875	0.88	-2.2
1,832,685	-		RPSI07_RS06875	0.88	+2.7
1,832,685	-		RPSI07_RS06875	0.88	-2.0
1,832,685	-		RPSI07_RS06875	0.88	-0.1
1,832,685	-		RPSI07_RS06875	0.88	-0.9
1,832,685	-		RPSI07_RS06875	0.88	-0.3
1,832,703	+		RPSI07_RS06875	0.90	-2.6
1,832,729	+				-4.4
1,832,729	+				+1.6
1,832,729	+				-1.6
1,832,729	+				-1.1
1,832,730	-				+2.7
1,832,746	+				+2.7
1,832,747	-				-1.0
1,832,747	-				-0.0
1,832,747	-				-0.7
1,832,747	-				-1.0
1,832,813	-				+0.8
1,832,813	-				-2.6
1,832,813	-				-0.3
1,832,813	-				+0.1
1,832,813	-				-1.8
1,832,865	+				-2.5
1,832,865	+				+1.1
1,832,866	-				+0.7
1,832,866	-				-0.9
1,832,866	-				+0.7
1,832,867	-				-1.8
1,832,872	+				+1.1
1,832,873	-				-0.0
1,832,873	-				-0.1
1,832,873	-				+0.6
1,832,893	-				-0.3
1,833,069	+				-0.8
1,833,069	+				+0.1
1,833,069	+				-0.7
1,833,069	+				-2.0
1,833,069	+				-0.5
1,833,069	+				+1.6
1,833,069	+				+0.6
1,833,069	+				-1.5
1,833,069	+				-0.0
1,833,070	-				+0.1
1,833,070	-				+0.8
1,833,070	-				-1.6
1,833,070	-				+2.7
1,833,070	-				-2.7
1,833,070	-				-0.6
1,833,258	+				-0.5
1,833,259	-				-0.1
1,833,273	+				-1.8
1,833,281	-				-2.2
1,833,295	+				+1.7
1,833,295	+				-1.4
1,833,317	+				+0.2
1,833,318	-				+0.7
1,833,318	-				-0.1
1,833,324	-				+0.4
1,833,365	-				+2.7
1,833,402	+				+0.3
1,833,403	-				-1.8
1,833,413	+				-1.2
1,833,413	+				+0.7
1,833,413	+				-0.4
1,833,413	+				+0.4
1,833,413	+				-0.1
1,833,414	-				+1.3
1,833,414	-				-0.1
1,833,414	-				+0.7
1,833,414	-				+0.6
1,833,414	-				-0.5
1,833,414	-				-1.0
1,833,495	+		RPSI07_RS24670	0.17	+1.5
1,833,496	-		RPSI07_RS24670	0.17	+1.0
1,833,498	+		RPSI07_RS24670	0.17	+0.7
1,833,498	+		RPSI07_RS24670	0.17	-1.9
1,833,498	+		RPSI07_RS24670	0.17	+0.4
1,833,499	-		RPSI07_RS24670	0.17	-0.6
1,833,520	+		RPSI07_RS24670	0.21	-0.9
1,833,560	+		RPSI07_RS24670	0.29	+0.4
1,833,560	+		RPSI07_RS24670	0.29	+0.7
1,833,560	+		RPSI07_RS24670	0.29	-0.8
1,833,561	-		RPSI07_RS24670	0.29	-1.8
1,833,569	+		RPSI07_RS24670	0.30	-1.0
1,833,569	+		RPSI07_RS24670	0.30	+1.6
1,833,612	+		RPSI07_RS24670	0.38	-1.9
1,833,613	-		RPSI07_RS24670	0.38	+0.1
1,833,636	+		RPSI07_RS24670	0.42	+1.0
1,833,687	+		RPSI07_RS24670	0.52	+1.1
1,833,687	+		RPSI07_RS24670	0.52	+0.8
1,833,688	-		RPSI07_RS24670	0.52	-1.0
1,833,705	+		RPSI07_RS24670	0.55	+1.5
1,833,775	+		RPSI07_RS24670	0.68	-1.3
1,833,802	-		RPSI07_RS24670	0.73	-0.8
1,833,808	+		RPSI07_RS24670	0.74	+0.1
1,833,808	+		RPSI07_RS24670	0.74	-1.1
1,833,809	-		RPSI07_RS24670	0.74	-1.4
1,833,809	-		RPSI07_RS24670	0.74	-2.0
1,833,809	-		RPSI07_RS24670	0.74	-0.2
1,833,840	-		RPSI07_RS24670	0.80	+0.1
1,833,855	-		RPSI07_RS24670	0.82	+0.5
1,833,882	+		RPSI07_RS24670	0.87	-0.5
1,833,883	-		RPSI07_RS24670	0.87	-0.3
1,833,924	-				-2.2
1,833,938	+				+1.7
1,833,938	+				-1.2
1,833,938	+				+1.3
1,833,939	-				+1.5
1,833,939	-				+0.9
1,833,963	+				+0.5
1,833,963	+				-0.3
1,833,964	-				-0.0
1,833,964	-				-1.0
1,833,964	-				+2.7
1,833,970	+				-0.2
1,833,971	-				-0.4
1,834,054	+				+1.6
1,834,054	+				-0.1
1,834,128	+		RPSI07_RS06885	0.11	+1.7
1,834,158	+		RPSI07_RS06885	0.12	-2.3
1,834,221	+		RPSI07_RS06885	0.16	+2.7
1,834,221	+		RPSI07_RS06885	0.16	+3.7
1,834,221	+		RPSI07_RS06885	0.16	-0.4
1,834,221	+		RPSI07_RS06885	0.16	+0.7
1,834,221	+		RPSI07_RS06885	0.16	-2.0
1,834,221	+		RPSI07_RS06885	0.16	+0.7
1,834,221	+		RPSI07_RS06885	0.16	+1.5
1,834,221	+		RPSI07_RS06885	0.16	-0.5
1,834,221	+		RPSI07_RS06885	0.16	-0.3
1,834,221	+		RPSI07_RS06885	0.16	+1.4
1,834,221	+		RPSI07_RS06885	0.16	-2.4
1,834,221	+		RPSI07_RS06885	0.16	-0.8
1,834,221	+		RPSI07_RS06885	0.16	-0.7
1,834,221	+		RPSI07_RS06885	0.16	-2.5
1,834,221	+		RPSI07_RS06885	0.16	-1.1
1,834,221	+		RPSI07_RS06885	0.16	+0.6
1,834,221	+		RPSI07_RS06885	0.16	-0.3
1,834,221	+		RPSI07_RS06885	0.16	-3.0
1,834,221	+		RPSI07_RS06885	0.16	+0.5
1,834,221	+		RPSI07_RS06885	0.16	-0.6
1,834,221	+		RPSI07_RS06885	0.16	+1.1
1,834,221	+		RPSI07_RS06885	0.16	+1.0
1,834,221	+		RPSI07_RS06885	0.16	+0.8
1,834,221	+		RPSI07_RS06885	0.16	-0.2
1,834,221	+		RPSI07_RS06885	0.16	+2.7
1,834,221	+		RPSI07_RS06885	0.16	-0.0
1,834,221	+		RPSI07_RS06885	0.16	-0.6
1,834,221	+		RPSI07_RS06885	0.16	-1.3
1,834,221	+		RPSI07_RS06885	0.16	+1.7
1,834,221	+		RPSI07_RS06885	0.16	-2.9
1,834,221	+		RPSI07_RS06885	0.16	+0.2
1,834,221	+		RPSI07_RS06885	0.16	-1.4
1,834,221	+		RPSI07_RS06885	0.16	-1.5
1,834,221	+		RPSI07_RS06885	0.16	-1.4
1,834,222	-		RPSI07_RS06885	0.16	+0.7
1,834,222	-		RPSI07_RS06885	0.16	-0.6
1,834,222	-		RPSI07_RS06885	0.16	+2.7
1,834,222	-		RPSI07_RS06885	0.16	-0.4
1,834,222	-		RPSI07_RS06885	0.16	-2.2
1,834,222	-		RPSI07_RS06885	0.16	+0.7
1,834,222	-		RPSI07_RS06885	0.16	+3.4
1,834,222	-		RPSI07_RS06885	0.16	-0.7
1,834,222	-		RPSI07_RS06885	0.16	-1.3
1,834,222	-		RPSI07_RS06885	0.16	-2.1
1,834,222	-		RPSI07_RS06885	0.16	-1.1
1,834,222	-		RPSI07_RS06885	0.16	-0.4
1,834,222	-		RPSI07_RS06885	0.16	+0.6
1,834,222	-		RPSI07_RS06885	0.16	-1.2
1,834,222	-		RPSI07_RS06885	0.16	+0.2
1,834,222	-		RPSI07_RS06885	0.16	+0.5
1,834,222	-		RPSI07_RS06885	0.16	-0.8
1,834,222	-		RPSI07_RS06885	0.16	-0.5
1,834,222	-		RPSI07_RS06885	0.16	+1.0
1,834,222	-		RPSI07_RS06885	0.16	+0.1
1,834,222	-		RPSI07_RS06885	0.16	-0.1
1,834,222	-		RPSI07_RS06885	0.16	-0.6
1,834,222	-		RPSI07_RS06885	0.16	-1.5
1,834,222	-		RPSI07_RS06885	0.16	-2.0
1,834,222	-		RPSI07_RS06885	0.16	+0.2
1,834,222	-		RPSI07_RS06885	0.16	+0.2
1,834,222	-		RPSI07_RS06885	0.16	-0.6
1,834,227	-		RPSI07_RS06885	0.16	-3.6
1,834,289	+		RPSI07_RS06885	0.20	+1.0
1,834,289	+		RPSI07_RS06885	0.20	-2.0
1,834,289	+		RPSI07_RS06885	0.20	+0.3
1,834,290	-		RPSI07_RS06885	0.20	+1.0
1,834,290	-		RPSI07_RS06885	0.20	-1.4
1,834,290	-		RPSI07_RS06885	0.20	+0.2
1,834,311	+		RPSI07_RS06885	0.21	-2.1
1,834,312	-		RPSI07_RS06885	0.21	+0.9
1,834,312	-		RPSI07_RS06885	0.21	-2.3
1,834,319	+		RPSI07_RS06885	0.22	-3.9
1,834,358	+		RPSI07_RS06885	0.24	-1.4
1,834,358	+		RPSI07_RS06885	0.24	-2.9
1,834,358	+		RPSI07_RS06885	0.24	-1.6
1,834,358	+		RPSI07_RS06885	0.24	-1.8
1,834,359	-		RPSI07_RS06885	0.24	-0.3
1,834,377	+		RPSI07_RS06885	0.25	-2.3
1,834,377	+		RPSI07_RS06885	0.25	-1.3
1,834,377	+		RPSI07_RS06885	0.25	-0.9
1,834,378	-		RPSI07_RS06885	0.25	-0.0
1,834,378	-		RPSI07_RS06885	0.25	+1.0
1,834,490	+		RPSI07_RS06885	0.32	+0.0
1,834,490	+		RPSI07_RS06885	0.32	+1.7
1,834,491	-		RPSI07_RS06885	0.32	+0.1
1,834,491	-		RPSI07_RS06885	0.32	-0.3
1,834,491	-		RPSI07_RS06885	0.32	+2.1
1,834,504	+		RPSI07_RS06885	0.33	-0.0
1,834,504	+		RPSI07_RS06885	0.33	-1.6
1,834,505	-		RPSI07_RS06885	0.33	+1.1
1,834,505	-		RPSI07_RS06885	0.33	+0.6
1,834,505	-		RPSI07_RS06885	0.33	-0.2
1,834,505	-		RPSI07_RS06885	0.33	+0.1
1,834,505	-		RPSI07_RS06885	0.33	+0.3
1,834,522	+		RPSI07_RS06885	0.34	+0.7
1,834,522	+		RPSI07_RS06885	0.34	+0.7
1,834,522	+		RPSI07_RS06885	0.34	+1.7
1,834,522	+		RPSI07_RS06885	0.34	+1.5
1,834,522	+		RPSI07_RS06885	0.34	+4.2
1,834,522	+		RPSI07_RS06885	0.34	+0.0
1,834,523	-		RPSI07_RS06885	0.34	+1.7
1,834,523	-		RPSI07_RS06885	0.34	-0.4
1,834,523	-		RPSI07_RS06885	0.34	+1.0
1,834,538	+		RPSI07_RS06885	0.35	+0.2
1,834,538	+		RPSI07_RS06885	0.35	+3.5
1,834,542	+		RPSI07_RS06885	0.35	-0.4
1,834,543	+		RPSI07_RS06885	0.35	-3.6
1,834,558	+		RPSI07_RS06885	0.36	+2.7
1,834,558	+		RPSI07_RS06885	0.36	-2.2
1,834,558	+		RPSI07_RS06885	0.36	-2.3
1,834,558	+		RPSI07_RS06885	0.36	-0.5
1,834,558	+		RPSI07_RS06885	0.36	+0.2
1,834,559	-		RPSI07_RS06885	0.36	-2.2
1,834,559	-		RPSI07_RS06885	0.36	+1.4
1,834,559	-		RPSI07_RS06885	0.36	-0.5
1,834,559	-		RPSI07_RS06885	0.36	-1.5
1,834,560	-		RPSI07_RS06885	0.36	-0.5
1,834,570	+		RPSI07_RS06885	0.36	+0.1
1,834,570	+		RPSI07_RS06885	0.36	+0.6
1,834,571	+		RPSI07_RS06885	0.37	+1.8
1,834,571	+		RPSI07_RS06885	0.37	+1.0
1,834,571	+		RPSI07_RS06885	0.37	+1.0
1,834,571	+		RPSI07_RS06885	0.37	-1.5
1,834,572	-		RPSI07_RS06885	0.37	-1.2
1,834,572	-		RPSI07_RS06885	0.37	-0.8
1,834,572	-		RPSI07_RS06885	0.37	-1.5
1,834,586	+		RPSI07_RS06885	0.37	-2.2
1,834,586	+		RPSI07_RS06885	0.37	-1.0
1,834,627	+		RPSI07_RS06885	0.40	+0.1
1,834,627	+		RPSI07_RS06885	0.40	-0.4
1,834,627	+		RPSI07_RS06885	0.40	+1.2
1,834,627	+		RPSI07_RS06885	0.40	-0.5
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1,834,627	+		RPSI07_RS06885	0.40	+1.2
1,834,628	-		RPSI07_RS06885	0.40	+1.0
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1,834,628	-		RPSI07_RS06885	0.40	-1.0
1,834,628	-		RPSI07_RS06885	0.40	+1.8
1,834,629	-		RPSI07_RS06885	0.40	-1.3
1,834,652	+		RPSI07_RS06885	0.41	+0.2
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1,834,652	+		RPSI07_RS06885	0.41	-0.5
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1,834,652	+		RPSI07_RS06885	0.41	-1.3
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1,834,652	+		RPSI07_RS06885	0.41	-0.4
1,834,652	+		RPSI07_RS06885	0.41	-2.5
1,834,653	-		RPSI07_RS06885	0.41	-1.0
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1,834,653	-		RPSI07_RS06885	0.41	-1.3
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1,834,653	-		RPSI07_RS06885	0.41	-1.3
1,834,653	-		RPSI07_RS06885	0.41	-1.0
1,834,658	+		RPSI07_RS06885	0.42	+0.4
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1,834,701	+		RPSI07_RS06885	0.44	-1.1
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1,834,701	+		RPSI07_RS06885	0.44	-0.3
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1,834,782	+		RPSI07_RS06885	0.49	-1.6
1,834,782	+		RPSI07_RS06885	0.49	-0.1
1,834,782	+		RPSI07_RS06885	0.49	-1.3
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1,834,848	+		RPSI07_RS06885	0.53	+2.6
1,834,848	+		RPSI07_RS06885	0.53	-1.9
1,834,848	+		RPSI07_RS06885	0.53	+0.4
1,834,849	-		RPSI07_RS06885	0.53	+0.1
1,834,876	+		RPSI07_RS06885	0.54	+0.0
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1,834,877	-		RPSI07_RS06885	0.54	+0.4