Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS23435

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS23425 and RPSI07_RS23430 overlap by 4 nucleotidesRPSI07_RS23430 and RPSI07_RS23435 are separated by 9 nucleotidesRPSI07_RS23435 and RPSI07_RS23440 overlap by 4 nucleotides RPSI07_RS23425: RPSI07_RS23425 - FAD-dependent oxidoreductase, at 3,402,068 to 3,403,207 _RS23425 RPSI07_RS23430: RPSI07_RS23430 - thiamine biosynthesis protein ThiS, at 3,403,204 to 3,403,431 _RS23430 RPSI07_RS23435: RPSI07_RS23435 - thiazole synthase, at 3,403,441 to 3,404,268 _RS23435 RPSI07_RS23440: RPSI07_RS23440 - thiamine phosphate synthase, at 3,404,265 to 3,405,419 _RS23440 Position (kb) 3403 3404 3405Strain fitness (log2 ratio) -1 0 1 2 3at 3402.815 kb on + strand, within RPSI07_RS23425at 3402.815 kb on + strand, within RPSI07_RS23425at 3402.815 kb on + strand, within RPSI07_RS23425at 3402.815 kb on + strand, within RPSI07_RS23425at 3402.842 kb on + strand, within RPSI07_RS23425at 3402.842 kb on + strand, within RPSI07_RS23425at 3402.842 kb on + strand, within RPSI07_RS23425

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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3,402,815 + RPSI07_RS23425 0.66 +3.0
3,402,815 + RPSI07_RS23425 0.66 +0.7
3,402,815 + RPSI07_RS23425 0.66 -1.1
3,402,815 + RPSI07_RS23425 0.66 -0.4
3,402,842 + RPSI07_RS23425 0.68 +0.4
3,402,842 + RPSI07_RS23425 0.68 -1.3
3,402,842 + RPSI07_RS23425 0.68 +0.2

Or see this region's nucleotide sequence