Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15685

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS15675 and RPSI07_RS15680 are separated by 25 nucleotidesRPSI07_RS15680 and RPSI07_RS15685 are separated by 26 nucleotidesRPSI07_RS15685 and RPSI07_RS15690 are separated by 22 nucleotidesRPSI07_RS15690 and RPSI07_RS15695 are separated by 364 nucleotides RPSI07_RS15675: RPSI07_RS15675 - alpha/beta hydrolase, at 1,676,203 to 1,677,072 _RS15675 RPSI07_RS15680: RPSI07_RS15680 - RidA family protein, at 1,677,098 to 1,677,460 _RS15680 RPSI07_RS15685: RPSI07_RS15685 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,677,487 to 1,679,727 _RS15685 RPSI07_RS15690: RPSI07_RS15690 - tRNA-Val, at 1,679,750 to 1,679,826 _RS15690 RPSI07_RS15695: RPSI07_RS15695 - threonine--tRNA ligase, at 1,680,191 to 1,682,098 _RS15695 Position (kb) 1677 1678 1679 1680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1676.520 kb on + strand, within RPSI07_RS15675at 1676.644 kb on + strand, within RPSI07_RS15675at 1676.797 kb on + strand, within RPSI07_RS15675at 1676.797 kb on + strand, within RPSI07_RS15675at 1676.798 kb on - strand, within RPSI07_RS15675at 1677.119 kb on + strandat 1677.119 kb on + strandat 1677.120 kb on - strandat 1677.155 kb on + strand, within RPSI07_RS15680at 1677.155 kb on + strandat 1677.156 kb on - strand, within RPSI07_RS15680at 1677.156 kb on - strand, within RPSI07_RS15680at 1677.156 kb on - strand, within RPSI07_RS15680at 1677.170 kb on + strand, within RPSI07_RS15680at 1677.171 kb on - strand, within RPSI07_RS15680at 1677.577 kb on + strandat 1678.039 kb on + strand, within RPSI07_RS15685at 1678.039 kb on + strand, within RPSI07_RS15685at 1678.040 kb on - strand, within RPSI07_RS15685at 1678.040 kb on - strand, within RPSI07_RS15685at 1678.040 kb on - strand, within RPSI07_RS15685at 1678.040 kb on - strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.126 kb on + strand, within RPSI07_RS15685at 1678.127 kb on - strand, within RPSI07_RS15685at 1678.127 kb on - strand, within RPSI07_RS15685at 1678.264 kb on + strand, within RPSI07_RS15685at 1678.264 kb on + strand, within RPSI07_RS15685at 1678.264 kb on + strand, within RPSI07_RS15685at 1678.264 kb on + strand, within RPSI07_RS15685at 1678.264 kb on + strand, within RPSI07_RS15685at 1678.265 kb on - strand, within RPSI07_RS15685at 1678.315 kb on + strand, within RPSI07_RS15685at 1678.315 kb on + strand, within RPSI07_RS15685at 1678.315 kb on + strand, within RPSI07_RS15685at 1678.363 kb on + strand, within RPSI07_RS15685at 1678.364 kb on - strand, within RPSI07_RS15685at 1678.423 kb on + strand, within RPSI07_RS15685at 1678.424 kb on - strand, within RPSI07_RS15685at 1678.451 kb on - strand, within RPSI07_RS15685at 1678.588 kb on + strand, within RPSI07_RS15685at 1678.741 kb on + strand, within RPSI07_RS15685at 1678.741 kb on + strand, within RPSI07_RS15685at 1678.741 kb on + strand, within RPSI07_RS15685at 1678.742 kb on - strand, within RPSI07_RS15685at 1678.966 kb on + strand, within RPSI07_RS15685at 1678.967 kb on - strand, within RPSI07_RS15685at 1678.967 kb on - strand, within RPSI07_RS15685at 1678.967 kb on - strand, within RPSI07_RS15685at 1678.967 kb on - strand, within RPSI07_RS15685at 1678.990 kb on - strand, within RPSI07_RS15685at 1678.990 kb on - strand, within RPSI07_RS15685at 1679.146 kb on + strand, within RPSI07_RS15685at 1679.501 kb on - strand, within RPSI07_RS15685at 1679.685 kb on - strandat 1679.888 kb on + strandat 1679.898 kb on + strandat 1679.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,676,520 + RPSI07_RS15675 0.36 -0.9
1,676,644 + RPSI07_RS15675 0.51 +0.7
1,676,797 + RPSI07_RS15675 0.68 -1.3
1,676,797 + RPSI07_RS15675 0.68 -0.9
1,676,798 - RPSI07_RS15675 0.68 -0.9
1,677,119 + +2.0
1,677,119 + +0.8
1,677,120 - -0.5
1,677,155 + RPSI07_RS15680 0.16 +1.0
1,677,155 + +2.6
1,677,156 - RPSI07_RS15680 0.16 +3.9
1,677,156 - RPSI07_RS15680 0.16 +0.0
1,677,156 - RPSI07_RS15680 0.16 +2.6
1,677,170 + RPSI07_RS15680 0.20 -3.5
1,677,171 - RPSI07_RS15680 0.20 -0.2
1,677,577 + +0.8
1,678,039 + RPSI07_RS15685 0.25 -1.0
1,678,039 + RPSI07_RS15685 0.25 -1.7
1,678,040 - RPSI07_RS15685 0.25 +0.8
1,678,040 - RPSI07_RS15685 0.25 +0.3
1,678,040 - RPSI07_RS15685 0.25 +1.0
1,678,040 - RPSI07_RS15685 0.25 +2.6
1,678,126 + RPSI07_RS15685 0.29 -0.9
1,678,126 + RPSI07_RS15685 0.29 +0.6
1,678,126 + RPSI07_RS15685 0.29 +0.5
1,678,126 + RPSI07_RS15685 0.29 +1.0
1,678,126 + RPSI07_RS15685 0.29 +0.2
1,678,126 + RPSI07_RS15685 0.29 +2.6
1,678,126 + RPSI07_RS15685 0.29 +2.6
1,678,126 + RPSI07_RS15685 0.29 -0.2
1,678,127 - RPSI07_RS15685 0.29 -0.3
1,678,127 - RPSI07_RS15685 0.29 -0.8
1,678,264 + RPSI07_RS15685 0.35 -3.4
1,678,264 + RPSI07_RS15685 0.35 -1.9
1,678,264 + RPSI07_RS15685 0.35 -2.1
1,678,264 + RPSI07_RS15685 0.35 +0.5
1,678,264 + RPSI07_RS15685 0.35 +1.8
1,678,265 - RPSI07_RS15685 0.35 -1.4
1,678,315 + RPSI07_RS15685 0.37 +0.1
1,678,315 + RPSI07_RS15685 0.37 +0.8
1,678,315 + RPSI07_RS15685 0.37 +2.6
1,678,363 + RPSI07_RS15685 0.39 +0.0
1,678,364 - RPSI07_RS15685 0.39 +1.2
1,678,423 + RPSI07_RS15685 0.42 -2.2
1,678,424 - RPSI07_RS15685 0.42 -0.4
1,678,451 - RPSI07_RS15685 0.43 -2.2
1,678,588 + RPSI07_RS15685 0.49 -1.6
1,678,741 + RPSI07_RS15685 0.56 -1.3
1,678,741 + RPSI07_RS15685 0.56 +0.7
1,678,741 + RPSI07_RS15685 0.56 +0.6
1,678,742 - RPSI07_RS15685 0.56 -2.0
1,678,966 + RPSI07_RS15685 0.66 +1.2
1,678,967 - RPSI07_RS15685 0.66 -0.1
1,678,967 - RPSI07_RS15685 0.66 +1.1
1,678,967 - RPSI07_RS15685 0.66 -0.2
1,678,967 - RPSI07_RS15685 0.66 +1.3
1,678,990 - RPSI07_RS15685 0.67 -0.2
1,678,990 - RPSI07_RS15685 0.67 +3.1
1,679,146 + RPSI07_RS15685 0.74 +0.3
1,679,501 - RPSI07_RS15685 0.90 +0.6
1,679,685 - +2.2
1,679,888 + -0.7
1,679,898 + +0.3
1,679,930 + +3.1

Or see this region's nucleotide sequence