Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS15255 and RPSI07_RS15260 are separated by 198 nucleotides RPSI07_RS15260 and RPSI07_RS15265 are separated by 20 nucleotides RPSI07_RS15265 and RPSI07_RS15270 are separated by 49 nucleotides RPSI07_RS15270 and RPSI07_RS15275 are separated by 95 nucleotides
RPSI07_RS15255: RPSI07_RS15255 - carbamoyl-phosphate synthase large subunit, at 1,584,618 to 1,587,863
_RS15255
RPSI07_RS15260: RPSI07_RS15260 - transcription elongation factor GreA, at 1,588,062 to 1,588,538
_RS15260
RPSI07_RS15265: RPSI07_RS15265 - DUF4149 domain-containing protein, at 1,588,559 to 1,589,026
_RS15265
RPSI07_RS15270: RPSI07_RS15270 - RNA-binding protein, at 1,589,076 to 1,589,576
_RS15270
RPSI07_RS15275: RPSI07_RS15275 - RlmE family RNA methyltransferase, at 1,589,672 to 1,590,337
_RS15275
Position (kb) 1588
1589
1590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1587.862 kb on - strand at 1587.952 kb on - strand at 1587.956 kb on + strand at 1587.956 kb on + strand at 1588.203 kb on + strand, within RPSI07_RS15260 at 1588.204 kb on - strand, within RPSI07_RS15260 at 1588.374 kb on + strand, within RPSI07_RS15260 at 1588.374 kb on + strand, within RPSI07_RS15260 at 1588.375 kb on - strand, within RPSI07_RS15260 at 1588.375 kb on - strand, within RPSI07_RS15260 at 1588.375 kb on - strand, within RPSI07_RS15260 at 1588.531 kb on - strand at 1588.531 kb on - strand at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.668 kb on + strand, within RPSI07_RS15265 at 1588.669 kb on - strand, within RPSI07_RS15265 at 1588.781 kb on + strand, within RPSI07_RS15265 at 1588.835 kb on + strand, within RPSI07_RS15265 at 1588.914 kb on - strand, within RPSI07_RS15265 at 1588.959 kb on - strand, within RPSI07_RS15265 at 1588.959 kb on - strand, within RPSI07_RS15265 at 1589.380 kb on + strand, within RPSI07_RS15270 at 1589.380 kb on + strand, within RPSI07_RS15270 at 1589.380 kb on + strand, within RPSI07_RS15270 at 1589.576 kb on + strand at 1589.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,587,862 - -0.3 1,587,952 - -2.3 1,587,956 + -0.9 1,587,956 + +0.9 1,588,203 + RPSI07_RS15260 0.30 +1.1 1,588,204 - RPSI07_RS15260 0.30 +0.9 1,588,374 + RPSI07_RS15260 0.65 +2.7 1,588,374 + RPSI07_RS15260 0.65 -1.4 1,588,375 - RPSI07_RS15260 0.66 +0.7 1,588,375 - RPSI07_RS15260 0.66 +0.2 1,588,375 - RPSI07_RS15260 0.66 +1.0 1,588,531 - +1.0 1,588,531 - -0.6 1,588,622 + RPSI07_RS15265 0.13 -1.4 1,588,622 + RPSI07_RS15265 0.13 +1.5 1,588,622 + RPSI07_RS15265 0.13 -1.1 1,588,622 + RPSI07_RS15265 0.13 +0.2 1,588,668 + RPSI07_RS15265 0.23 +0.2 1,588,669 - RPSI07_RS15265 0.24 -1.5 1,588,781 + RPSI07_RS15265 0.47 -1.3 1,588,835 + RPSI07_RS15265 0.59 -0.2 1,588,914 - RPSI07_RS15265 0.76 -0.9 1,588,959 - RPSI07_RS15265 0.85 -0.1 1,588,959 - RPSI07_RS15265 0.85 -0.8 1,589,380 + RPSI07_RS15270 0.61 -2.1 1,589,380 + RPSI07_RS15270 0.61 -0.5 1,589,380 + RPSI07_RS15270 0.61 -1.5 1,589,576 + +0.7 1,589,576 + -0.1
Or see this region's nucleotide sequence