Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS15245 and RPSI07_RS15250 are separated by 23 nucleotides RPSI07_RS15250 and RPSI07_RS15255 are separated by 16 nucleotides RPSI07_RS15255 and RPSI07_RS15260 are separated by 198 nucleotides RPSI07_RS15260 and RPSI07_RS15265 are separated by 20 nucleotides
RPSI07_RS15245: RPSI07_RS15245 - carbamoyl-phosphate synthase small subunit, at 1,582,767 to 1,583,903
_RS15245
RPSI07_RS15250: RPSI07_RS15250 - leucine efflux protein LeuE, at 1,583,927 to 1,584,601
_RS15250
RPSI07_RS15255: RPSI07_RS15255 - carbamoyl-phosphate synthase large subunit, at 1,584,618 to 1,587,863
_RS15255
RPSI07_RS15260: RPSI07_RS15260 - transcription elongation factor GreA, at 1,588,062 to 1,588,538
_RS15260
RPSI07_RS15265: RPSI07_RS15265 - DUF4149 domain-containing protein, at 1,588,559 to 1,589,026
_RS15265
Position (kb) 1584
1585
1586
1587
1588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1583.901 kb on + strand at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.026 kb on + strand, within RPSI07_RS15250 at 1584.167 kb on + strand, within RPSI07_RS15250 at 1584.599 kb on + strand at 1587.862 kb on - strand at 1587.952 kb on - strand at 1587.956 kb on + strand at 1587.956 kb on + strand at 1588.203 kb on + strand, within RPSI07_RS15260 at 1588.204 kb on - strand, within RPSI07_RS15260 at 1588.374 kb on + strand, within RPSI07_RS15260 at 1588.374 kb on + strand, within RPSI07_RS15260 at 1588.375 kb on - strand, within RPSI07_RS15260 at 1588.375 kb on - strand, within RPSI07_RS15260 at 1588.375 kb on - strand, within RPSI07_RS15260 at 1588.531 kb on - strand at 1588.531 kb on - strand at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.622 kb on + strand, within RPSI07_RS15265 at 1588.668 kb on + strand, within RPSI07_RS15265 at 1588.669 kb on - strand, within RPSI07_RS15265 at 1588.781 kb on + strand, within RPSI07_RS15265 at 1588.835 kb on + strand, within RPSI07_RS15265
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,583,901 + -1.8 1,584,026 + RPSI07_RS15250 0.15 -0.4 1,584,026 + RPSI07_RS15250 0.15 -0.4 1,584,026 + RPSI07_RS15250 0.15 -1.0 1,584,026 + RPSI07_RS15250 0.15 -1.0 1,584,026 + RPSI07_RS15250 0.15 -0.7 1,584,026 + RPSI07_RS15250 0.15 -1.5 1,584,026 + RPSI07_RS15250 0.15 -2.0 1,584,167 + RPSI07_RS15250 0.36 +0.7 1,584,599 + +0.9 1,587,862 - -0.3 1,587,952 - -2.3 1,587,956 + -0.9 1,587,956 + +0.9 1,588,203 + RPSI07_RS15260 0.30 +1.1 1,588,204 - RPSI07_RS15260 0.30 +0.9 1,588,374 + RPSI07_RS15260 0.65 +2.7 1,588,374 + RPSI07_RS15260 0.65 -1.4 1,588,375 - RPSI07_RS15260 0.66 +0.7 1,588,375 - RPSI07_RS15260 0.66 +0.2 1,588,375 - RPSI07_RS15260 0.66 +1.0 1,588,531 - +1.0 1,588,531 - -0.6 1,588,622 + RPSI07_RS15265 0.13 -1.4 1,588,622 + RPSI07_RS15265 0.13 +1.5 1,588,622 + RPSI07_RS15265 0.13 -1.1 1,588,622 + RPSI07_RS15265 0.13 +0.2 1,588,668 + RPSI07_RS15265 0.23 +0.2 1,588,669 - RPSI07_RS15265 0.24 -1.5 1,588,781 + RPSI07_RS15265 0.47 -1.3 1,588,835 + RPSI07_RS15265 0.59 -0.2
Or see this region's nucleotide sequence