Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS14735 and RPSI07_RS14740 are separated by 14 nucleotides RPSI07_RS14740 and RPSI07_RS14745 are separated by 37 nucleotides RPSI07_RS14745 and RPSI07_RS14750 are separated by 81 nucleotides
RPSI07_RS14735: RPSI07_RS14735 - site-specific DNA-methyltransferase, at 1,481,864 to 1,482,676
_RS14735
RPSI07_RS14740: RPSI07_RS14740 - tryptophan synthase subunit alpha, at 1,482,691 to 1,483,488
_RS14740
RPSI07_RS14745: RPSI07_RS14745 - acetyl-CoA carboxylase carboxyltransferase subunit beta, at 1,483,526 to 1,484,398
_RS14745
RPSI07_RS14750: RPSI07_RS14750 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 1,484,480 to 1,485,778
_RS14750
Position (kb) 1483
1484
1485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1482.690 kb on + strand at 1482.690 kb on + strand at 1483.207 kb on + strand, within RPSI07_RS14740 at 1483.216 kb on + strand, within RPSI07_RS14740 at 1484.470 kb on + strand at 1484.470 kb on + strand at 1484.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,482,690 + -2.7 1,482,690 + -2.9 1,483,207 + RPSI07_RS14740 0.65 -2.0 1,483,216 + RPSI07_RS14740 0.66 -1.6 1,484,470 + -0.1 1,484,470 + +1.8 1,484,474 + +1.6
Or see this region's nucleotide sequence