Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS14465 and RPSI07_RS14470 are separated by 45 nucleotides RPSI07_RS14470 and RPSI07_RS14475 are separated by 32 nucleotides RPSI07_RS14475 and RPSI07_RS14480 are separated by 10 nucleotides RPSI07_RS14480 and RPSI07_RS14485 are separated by 10 nucleotides
RPSI07_RS14465: RPSI07_RS14465 - urease accessory protein, at 1,427,076 to 1,427,963
_RS14465
RPSI07_RS14470: RPSI07_RS14470 - urease subunit gamma, at 1,428,009 to 1,428,311
_RS14470
RPSI07_RS14475: RPSI07_RS14475 - urease accessory protein UreJ, at 1,428,344 to 1,428,961
_RS14475
RPSI07_RS14480: RPSI07_RS14480 - urease subunit beta, at 1,428,972 to 1,429,277
_RS14480
RPSI07_RS14485: RPSI07_RS14485 - urease subunit alpha, at 1,429,288 to 1,431,006
_RS14485
Position (kb) 1428
1429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1427.037 kb on + strand at 1427.367 kb on + strand, within RPSI07_RS14465 at 1427.368 kb on - strand, within RPSI07_RS14465 at 1427.772 kb on + strand, within RPSI07_RS14465 at 1428.103 kb on - strand, within RPSI07_RS14470 at 1428.183 kb on + strand, within RPSI07_RS14470 at 1428.184 kb on - strand, within RPSI07_RS14470 at 1428.443 kb on - strand, within RPSI07_RS14475 at 1428.759 kb on - strand, within RPSI07_RS14475 at 1428.929 kb on + strand at 1428.929 kb on + strand at 1428.930 kb on - strand at 1429.090 kb on - strand, within RPSI07_RS14480 at 1429.098 kb on + strand, within RPSI07_RS14480 at 1429.098 kb on + strand, within RPSI07_RS14480 at 1429.099 kb on - strand, within RPSI07_RS14480 at 1429.158 kb on - strand, within RPSI07_RS14480 at 1429.243 kb on - strand, within RPSI07_RS14480
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,427,037 + +2.3 1,427,367 + RPSI07_RS14465 0.33 +1.0 1,427,368 - RPSI07_RS14465 0.33 +0.2 1,427,772 + RPSI07_RS14465 0.78 -1.5 1,428,103 - RPSI07_RS14470 0.31 -1.9 1,428,183 + RPSI07_RS14470 0.57 +1.0 1,428,184 - RPSI07_RS14470 0.58 -1.1 1,428,443 - RPSI07_RS14475 0.16 -1.0 1,428,759 - RPSI07_RS14475 0.67 +0.2 1,428,929 + +2.3 1,428,929 + -0.5 1,428,930 - +0.1 1,429,090 - RPSI07_RS14480 0.39 +0.7 1,429,098 + RPSI07_RS14480 0.41 +1.2 1,429,098 + RPSI07_RS14480 0.41 +0.1 1,429,099 - RPSI07_RS14480 0.42 -1.2 1,429,158 - RPSI07_RS14480 0.61 +0.7 1,429,243 - RPSI07_RS14480 0.89 +0.4
Or see this region's nucleotide sequence