Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS14455 and RPSI07_RS14460 are separated by 1 nucleotides RPSI07_RS14460 and RPSI07_RS14465 are separated by 99 nucleotides RPSI07_RS14465 and RPSI07_RS14470 are separated by 45 nucleotides RPSI07_RS14470 and RPSI07_RS14475 are separated by 32 nucleotides
RPSI07_RS14455: RPSI07_RS14455 - urea ABC transporter ATP-binding protein UrtD, at 1,425,431 to 1,426,282
_RS14455
RPSI07_RS14460: RPSI07_RS14460 - urea ABC transporter ATP-binding subunit UrtE, at 1,426,284 to 1,426,976
_RS14460
RPSI07_RS14465: RPSI07_RS14465 - urease accessory protein, at 1,427,076 to 1,427,963
_RS14465
RPSI07_RS14470: RPSI07_RS14470 - urease subunit gamma, at 1,428,009 to 1,428,311
_RS14470
RPSI07_RS14475: RPSI07_RS14475 - urease accessory protein UreJ, at 1,428,344 to 1,428,961
_RS14475
Position (kb) 1427
1428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1426.268 kb on + strand at 1426.269 kb on - strand at 1426.269 kb on - strand at 1426.269 kb on - strand at 1426.311 kb on + strand at 1426.314 kb on + strand at 1426.315 kb on - strand at 1426.315 kb on - strand at 1426.315 kb on - strand at 1426.494 kb on + strand, within RPSI07_RS14460 at 1426.495 kb on - strand, within RPSI07_RS14460 at 1426.495 kb on - strand, within RPSI07_RS14460 at 1426.522 kb on - strand, within RPSI07_RS14460 at 1426.522 kb on - strand, within RPSI07_RS14460 at 1426.626 kb on + strand, within RPSI07_RS14460 at 1426.626 kb on + strand, within RPSI07_RS14460 at 1426.627 kb on - strand, within RPSI07_RS14460 at 1426.627 kb on - strand, within RPSI07_RS14460 at 1426.855 kb on - strand, within RPSI07_RS14460 at 1426.887 kb on + strand, within RPSI07_RS14460 at 1427.037 kb on + strand at 1427.367 kb on + strand, within RPSI07_RS14465 at 1427.368 kb on - strand, within RPSI07_RS14465 at 1427.772 kb on + strand, within RPSI07_RS14465 at 1428.103 kb on - strand, within RPSI07_RS14470 at 1428.183 kb on + strand, within RPSI07_RS14470 at 1428.184 kb on - strand, within RPSI07_RS14470 at 1428.443 kb on - strand, within RPSI07_RS14475 at 1428.759 kb on - strand, within RPSI07_RS14475 at 1428.929 kb on + strand at 1428.929 kb on + strand at 1428.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,426,268 + -0.3 1,426,269 - +0.3 1,426,269 - -0.4 1,426,269 - +0.8 1,426,311 + +0.4 1,426,314 + +0.1 1,426,315 - -2.6 1,426,315 - -0.6 1,426,315 - -1.2 1,426,494 + RPSI07_RS14460 0.30 +2.7 1,426,495 - RPSI07_RS14460 0.30 +0.0 1,426,495 - RPSI07_RS14460 0.30 -3.0 1,426,522 - RPSI07_RS14460 0.34 -2.3 1,426,522 - RPSI07_RS14460 0.34 +0.6 1,426,626 + RPSI07_RS14460 0.49 +0.2 1,426,626 + RPSI07_RS14460 0.49 -1.5 1,426,627 - RPSI07_RS14460 0.49 +0.7 1,426,627 - RPSI07_RS14460 0.49 -0.6 1,426,855 - RPSI07_RS14460 0.82 +0.0 1,426,887 + RPSI07_RS14460 0.87 -1.1 1,427,037 + +2.3 1,427,367 + RPSI07_RS14465 0.33 +1.0 1,427,368 - RPSI07_RS14465 0.33 +0.2 1,427,772 + RPSI07_RS14465 0.78 -1.5 1,428,103 - RPSI07_RS14470 0.31 -1.9 1,428,183 + RPSI07_RS14470 0.57 +1.0 1,428,184 - RPSI07_RS14470 0.58 -1.1 1,428,443 - RPSI07_RS14475 0.16 -1.0 1,428,759 - RPSI07_RS14475 0.67 +0.2 1,428,929 + +2.3 1,428,929 + -0.5 1,428,930 - +0.1
Or see this region's nucleotide sequence