Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS12365 and RPSI07_RS12370 are separated by 312 nucleotides RPSI07_RS12370 and RPSI07_RS12375 are separated by 127 nucleotides RPSI07_RS12375 and RPSI07_RS12380 are separated by 3 nucleotides
RPSI07_RS12365: RPSI07_RS12365 - hypothetical protein, at 968,734 to 969,273
_RS12365
RPSI07_RS12370: RPSI07_RS12370 - gamma-glutamyltransferase family protein, at 969,586 to 971,214
_RS12370
RPSI07_RS12375: RPSI07_RS12375 - DoxX family protein, at 971,342 to 971,752
_RS12375
RPSI07_RS12380: RPSI07_RS12380 - MFS transporter, at 971,756 to 973,312
_RS12380
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 968.717 kb on - strand at 968.717 kb on - strand at 968.717 kb on - strand at 968.820 kb on + strand, within RPSI07_RS12365 at 968.935 kb on + strand, within RPSI07_RS12365 at 968.935 kb on + strand, within RPSI07_RS12365 at 968.935 kb on + strand, within RPSI07_RS12365 at 968.935 kb on + strand, within RPSI07_RS12365 at 968.935 kb on + strand, within RPSI07_RS12365 at 968.935 kb on + strand, within RPSI07_RS12365 at 968.936 kb on - strand, within RPSI07_RS12365 at 968.936 kb on - strand, within RPSI07_RS12365 at 968.936 kb on - strand, within RPSI07_RS12365 at 968.969 kb on + strand, within RPSI07_RS12365 at 969.014 kb on + strand, within RPSI07_RS12365 at 969.014 kb on + strand, within RPSI07_RS12365 at 969.014 kb on + strand, within RPSI07_RS12365 at 969.015 kb on - strand, within RPSI07_RS12365 at 969.097 kb on + strand, within RPSI07_RS12365 at 969.195 kb on - strand, within RPSI07_RS12365 at 969.357 kb on + strand at 969.459 kb on + strand at 969.460 kb on - strand at 969.591 kb on - strand at 969.635 kb on + strand at 969.638 kb on - strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.695 kb on + strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.696 kb on - strand at 969.957 kb on + strand, within RPSI07_RS12370 at 969.957 kb on + strand, within RPSI07_RS12370 at 969.958 kb on - strand, within RPSI07_RS12370 at 969.958 kb on - strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.082 kb on + strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.083 kb on - strand, within RPSI07_RS12370 at 970.136 kb on + strand, within RPSI07_RS12370 at 970.221 kb on - strand, within RPSI07_RS12370 at 970.449 kb on - strand, within RPSI07_RS12370 at 970.910 kb on + strand, within RPSI07_RS12370 at 970.910 kb on + strand, within RPSI07_RS12370 at 970.911 kb on - strand, within RPSI07_RS12370 at 970.911 kb on - strand, within RPSI07_RS12370 at 971.234 kb on - strand at 971.263 kb on + strand at 971.263 kb on + strand at 971.264 kb on - strand at 971.264 kb on - strand at 971.264 kb on - strand at 971.304 kb on + strand at 971.305 kb on - strand at 971.315 kb on + strand at 971.316 kb on - strand at 971.462 kb on + strand, within RPSI07_RS12375 at 971.463 kb on - strand, within RPSI07_RS12375 at 971.536 kb on + strand, within RPSI07_RS12375 at 971.536 kb on + strand, within RPSI07_RS12375 at 971.620 kb on + strand, within RPSI07_RS12375 at 971.620 kb on + strand, within RPSI07_RS12375 at 971.620 kb on + strand, within RPSI07_RS12375 at 971.620 kb on + strand, within RPSI07_RS12375 at 971.621 kb on - strand, within RPSI07_RS12375 at 971.624 kb on + strand, within RPSI07_RS12375 at 971.624 kb on + strand, within RPSI07_RS12375 at 971.625 kb on - strand, within RPSI07_RS12375 at 971.625 kb on - strand, within RPSI07_RS12375 at 971.625 kb on - strand, within RPSI07_RS12375 at 971.625 kb on - strand, within RPSI07_RS12375 at 971.672 kb on + strand, within RPSI07_RS12375 at 971.672 kb on + strand, within RPSI07_RS12375 at 971.673 kb on - strand, within RPSI07_RS12375 at 971.673 kb on - strand, within RPSI07_RS12375 at 971.732 kb on + strand at 971.733 kb on - strand at 971.733 kb on - strand at 971.848 kb on + strand at 971.849 kb on - strand at 972.084 kb on + strand, within RPSI07_RS12380 at 972.084 kb on + strand, within RPSI07_RS12380 at 972.085 kb on - strand, within RPSI07_RS12380 at 972.159 kb on + strand, within RPSI07_RS12380 at 972.160 kb on - strand, within RPSI07_RS12380 at 972.160 kb on - strand, within RPSI07_RS12380 at 972.160 kb on - strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.213 kb on + strand, within RPSI07_RS12380 at 972.214 kb on - strand, within RPSI07_RS12380 at 972.214 kb on - strand, within RPSI07_RS12380 at 972.214 kb on - strand, within RPSI07_RS12380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 968,717 - -1.2 968,717 - +1.8 968,717 - -0.4 968,820 + RPSI07_RS12365 0.16 -2.0 968,935 + RPSI07_RS12365 0.37 +1.8 968,935 + RPSI07_RS12365 0.37 -0.7 968,935 + RPSI07_RS12365 0.37 +0.3 968,935 + RPSI07_RS12365 0.37 +2.8 968,935 + RPSI07_RS12365 0.37 -2.9 968,935 + RPSI07_RS12365 0.37 -0.7 968,936 - RPSI07_RS12365 0.37 +2.8 968,936 - RPSI07_RS12365 0.37 +0.1 968,936 - RPSI07_RS12365 0.37 -0.4 968,969 + RPSI07_RS12365 0.44 +0.8 969,014 + RPSI07_RS12365 0.52 -0.5 969,014 + RPSI07_RS12365 0.52 +0.2 969,014 + RPSI07_RS12365 0.52 +1.4 969,015 - RPSI07_RS12365 0.52 -0.9 969,097 + RPSI07_RS12365 0.67 -0.2 969,195 - RPSI07_RS12365 0.85 -2.0 969,357 + -1.1 969,459 + -0.0 969,460 - +0.1 969,591 - -0.0 969,635 + -1.1 969,638 - +2.4 969,695 + +1.0 969,695 + +0.1 969,695 + -0.9 969,695 + -0.8 969,695 + -0.9 969,695 + -1.0 969,695 + -0.9 969,695 + -0.8 969,696 - -0.0 969,696 - +1.8 969,696 - +1.3 969,696 - -1.6 969,696 - +2.8 969,696 - +0.5 969,696 - -1.1 969,696 - +2.8 969,696 - -1.2 969,696 - +0.1 969,957 + RPSI07_RS12370 0.23 -1.2 969,957 + RPSI07_RS12370 0.23 -0.9 969,958 - RPSI07_RS12370 0.23 +0.9 969,958 - RPSI07_RS12370 0.23 -0.5 970,082 + RPSI07_RS12370 0.30 -0.5 970,082 + RPSI07_RS12370 0.30 -0.4 970,082 + RPSI07_RS12370 0.30 -2.1 970,082 + RPSI07_RS12370 0.30 -0.7 970,082 + RPSI07_RS12370 0.30 +0.0 970,082 + RPSI07_RS12370 0.30 -2.6 970,082 + RPSI07_RS12370 0.30 +1.1 970,083 - RPSI07_RS12370 0.31 +0.0 970,083 - RPSI07_RS12370 0.31 +0.1 970,083 - RPSI07_RS12370 0.31 -1.5 970,083 - RPSI07_RS12370 0.31 +1.4 970,083 - RPSI07_RS12370 0.31 -1.1 970,083 - RPSI07_RS12370 0.31 +2.3 970,083 - RPSI07_RS12370 0.31 -0.1 970,083 - RPSI07_RS12370 0.31 +2.8 970,136 + RPSI07_RS12370 0.34 -2.3 970,221 - RPSI07_RS12370 0.39 -1.6 970,449 - RPSI07_RS12370 0.53 -2.7 970,910 + RPSI07_RS12370 0.81 -0.2 970,910 + RPSI07_RS12370 0.81 +1.0 970,911 - RPSI07_RS12370 0.81 +0.8 970,911 - RPSI07_RS12370 0.81 +0.4 971,234 - +2.8 971,263 + +1.6 971,263 + -2.3 971,264 - -1.5 971,264 - +0.0 971,264 - -1.7 971,304 + +0.3 971,305 - +1.2 971,315 + +1.1 971,316 - -1.2 971,462 + RPSI07_RS12375 0.29 -1.2 971,463 - RPSI07_RS12375 0.29 -2.9 971,536 + RPSI07_RS12375 0.47 +1.1 971,536 + RPSI07_RS12375 0.47 -0.6 971,620 + RPSI07_RS12375 0.68 -0.0 971,620 + RPSI07_RS12375 0.68 -0.1 971,620 + RPSI07_RS12375 0.68 -0.6 971,620 + RPSI07_RS12375 0.68 -0.7 971,621 - RPSI07_RS12375 0.68 -1.0 971,624 + RPSI07_RS12375 0.69 -1.4 971,624 + RPSI07_RS12375 0.69 +1.5 971,625 - RPSI07_RS12375 0.69 +2.8 971,625 - RPSI07_RS12375 0.69 -0.5 971,625 - RPSI07_RS12375 0.69 +0.8 971,625 - RPSI07_RS12375 0.69 -0.2 971,672 + RPSI07_RS12375 0.80 +1.8 971,672 + RPSI07_RS12375 0.80 -2.3 971,673 - RPSI07_RS12375 0.81 +0.7 971,673 - RPSI07_RS12375 0.81 +2.8 971,732 + +0.3 971,733 - +0.4 971,733 - +0.3 971,848 + -0.9 971,849 - +1.5 972,084 + RPSI07_RS12380 0.21 -0.5 972,084 + RPSI07_RS12380 0.21 -0.8 972,085 - RPSI07_RS12380 0.21 -0.9 972,159 + RPSI07_RS12380 0.26 -2.0 972,160 - RPSI07_RS12380 0.26 +0.5 972,160 - RPSI07_RS12380 0.26 -0.4 972,160 - RPSI07_RS12380 0.26 -3.7 972,213 + RPSI07_RS12380 0.29 +3.6 972,213 + RPSI07_RS12380 0.29 +2.4 972,213 + RPSI07_RS12380 0.29 +2.0 972,213 + RPSI07_RS12380 0.29 +1.0 972,213 + RPSI07_RS12380 0.29 +1.0 972,213 + RPSI07_RS12380 0.29 -2.1 972,213 + RPSI07_RS12380 0.29 +2.3 972,214 - RPSI07_RS12380 0.29 +2.8 972,214 - RPSI07_RS12380 0.29 -1.6 972,214 - RPSI07_RS12380 0.29 -1.4
Or see this region's nucleotide sequence