Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS12320

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS12310 and RPSI07_RS12315 are separated by 35 nucleotidesRPSI07_RS12315 and RPSI07_RS12320 are separated by 64 nucleotidesRPSI07_RS12320 and RPSI07_RS12325 are separated by 181 nucleotides RPSI07_RS12310: RPSI07_RS12310 - hypothetical protein, at 957,919 to 958,725 _RS12310 RPSI07_RS12315: RPSI07_RS12315 - arogenate dehydratase, at 958,761 to 959,564 _RS12315 RPSI07_RS12320: RPSI07_RS12320 - hypothetical protein, at 959,629 to 960,021 _RS12320 RPSI07_RS12325: RPSI07_RS12325 - signal peptidase, at 960,203 to 961,219 _RS12325 Position (kb) 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 958.891 kb on + strand, within RPSI07_RS12315at 958.891 kb on + strand, within RPSI07_RS12315at 958.891 kb on + strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 959.044 kb on + strand, within RPSI07_RS12315at 959.044 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.219 kb on - strand, within RPSI07_RS12315at 959.219 kb on - strand, within RPSI07_RS12315at 959.413 kb on + strand, within RPSI07_RS12315at 959.413 kb on + strand, within RPSI07_RS12315at 959.414 kb on - strand, within RPSI07_RS12315at 959.428 kb on + strand, within RPSI07_RS12315at 959.428 kb on + strand, within RPSI07_RS12315at 959.564 kb on + strandat 959.564 kb on + strandat 959.564 kb on + strandat 959.565 kb on - strandat 959.565 kb on - strandat 959.565 kb on - strandat 959.565 kb on - strandat 959.630 kb on + strandat 959.630 kb on + strandat 959.631 kb on - strandat 959.631 kb on - strandat 959.816 kb on + strand, within RPSI07_RS12320at 959.816 kb on + strand, within RPSI07_RS12320at 959.816 kb on + strand, within RPSI07_RS12320at 959.817 kb on - strand, within RPSI07_RS12320at 959.817 kb on - strand, within RPSI07_RS12320at 959.908 kb on + strand, within RPSI07_RS12320at 959.908 kb on + strand, within RPSI07_RS12320at 959.909 kb on - strandat 959.909 kb on - strand, within RPSI07_RS12320at 959.917 kb on - strand, within RPSI07_RS12320at 960.056 kb on - strandat 960.126 kb on - strandat 960.187 kb on - strandat 960.187 kb on - strandat 960.323 kb on + strand, within RPSI07_RS12325at 960.324 kb on - strand, within RPSI07_RS12325at 960.416 kb on + strand, within RPSI07_RS12325at 960.416 kb on + strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.605 kb on + strand, within RPSI07_RS12325at 960.605 kb on + strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.643 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.732 kb on - strand, within RPSI07_RS12325at 960.732 kb on - strand, within RPSI07_RS12325at 960.826 kb on + strand, within RPSI07_RS12325at 960.826 kb on + strand, within RPSI07_RS12325at 960.827 kb on - strand, within RPSI07_RS12325at 960.827 kb on - strand, within RPSI07_RS12325at 960.909 kb on - strand, within RPSI07_RS12325at 960.950 kb on + strand, within RPSI07_RS12325at 960.951 kb on - strand, within RPSI07_RS12325at 960.951 kb on - strand, within RPSI07_RS12325

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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958,891 + RPSI07_RS12315 0.16 +1.3
958,891 + RPSI07_RS12315 0.16 +0.5
958,891 + RPSI07_RS12315 0.16 -0.6
958,892 - RPSI07_RS12315 0.16 -2.0
958,892 - RPSI07_RS12315 0.16 +0.3
958,892 - RPSI07_RS12315 0.16 -1.4
958,892 - RPSI07_RS12315 0.16 -0.0
959,044 + RPSI07_RS12315 0.35 +0.5
959,044 + RPSI07_RS12315 0.35 +2.8
959,218 + RPSI07_RS12315 0.57 +1.5
959,218 + RPSI07_RS12315 0.57 +1.8
959,218 + RPSI07_RS12315 0.57 -2.5
959,218 + RPSI07_RS12315 0.57 -1.9
959,219 - RPSI07_RS12315 0.57 -0.7
959,219 - RPSI07_RS12315 0.57 +1.3
959,413 + RPSI07_RS12315 0.81 -0.9
959,413 + RPSI07_RS12315 0.81 +0.4
959,414 - RPSI07_RS12315 0.81 +1.4
959,428 + RPSI07_RS12315 0.83 -0.7
959,428 + RPSI07_RS12315 0.83 +1.1
959,564 + -0.9
959,564 + -0.5
959,564 + -1.0
959,565 - +2.4
959,565 - -0.2
959,565 - +2.8
959,565 - +0.4
959,630 + -2.8
959,630 + +1.8
959,631 - -0.7
959,631 - -1.0
959,816 + RPSI07_RS12320 0.48 -0.6
959,816 + RPSI07_RS12320 0.48 +1.3
959,816 + RPSI07_RS12320 0.48 +2.8
959,817 - RPSI07_RS12320 0.48 -1.4
959,817 - RPSI07_RS12320 0.48 -0.1
959,908 + RPSI07_RS12320 0.71 -0.8
959,908 + RPSI07_RS12320 0.71 +2.8
959,909 - +1.8
959,909 - RPSI07_RS12320 0.71 -2.1
959,917 - RPSI07_RS12320 0.73 +0.0
960,056 - -2.2
960,126 - +0.7
960,187 - -0.5
960,187 - +1.7
960,323 + RPSI07_RS12325 0.12 +2.3
960,324 - RPSI07_RS12325 0.12 -0.1
960,416 + RPSI07_RS12325 0.21 -1.4
960,416 + RPSI07_RS12325 0.21 +2.8
960,417 - RPSI07_RS12325 0.21 +3.2
960,417 - RPSI07_RS12325 0.21 -0.9
960,417 - RPSI07_RS12325 0.21 -0.7
960,417 - RPSI07_RS12325 0.21 +1.3
960,605 + RPSI07_RS12325 0.40 +1.3
960,605 + RPSI07_RS12325 0.40 +5.8
960,606 - RPSI07_RS12325 0.40 +0.8
960,606 - RPSI07_RS12325 0.40 +0.0
960,606 - RPSI07_RS12325 0.40 -0.7
960,606 - RPSI07_RS12325 0.40 -1.8
960,643 + RPSI07_RS12325 0.43 +2.0
960,644 + RPSI07_RS12325 0.43 +1.4
960,644 + RPSI07_RS12325 0.43 -0.2
960,644 + RPSI07_RS12325 0.43 +0.3
960,644 + RPSI07_RS12325 0.43 -2.0
960,644 + RPSI07_RS12325 0.43 +2.8
960,644 + RPSI07_RS12325 0.43 -0.2
960,645 - RPSI07_RS12325 0.43 -0.9
960,645 - RPSI07_RS12325 0.43 -1.3
960,645 - RPSI07_RS12325 0.43 -0.5
960,645 - RPSI07_RS12325 0.43 +3.2
960,645 - RPSI07_RS12325 0.43 +2.1
960,645 - RPSI07_RS12325 0.43 -0.5
960,645 - RPSI07_RS12325 0.43 -1.4
960,645 - RPSI07_RS12325 0.43 -0.1
960,645 - RPSI07_RS12325 0.43 +0.3
960,732 - RPSI07_RS12325 0.52 +2.1
960,732 - RPSI07_RS12325 0.52 +0.4
960,826 + RPSI07_RS12325 0.61 +1.9
960,826 + RPSI07_RS12325 0.61 +0.4
960,827 - RPSI07_RS12325 0.61 -0.9
960,827 - RPSI07_RS12325 0.61 -0.4
960,909 - RPSI07_RS12325 0.69 -2.0
960,950 + RPSI07_RS12325 0.73 +2.8
960,951 - RPSI07_RS12325 0.74 -1.2
960,951 - RPSI07_RS12325 0.74 -2.7

Or see this region's nucleotide sequence